| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 2,979,248 | 0 | T | C | 50.0% | ‑6.4 / 15.1 | 13 | noncoding (1553/2928 nt) | EO946_RS15430 | 23S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base T (0/6); new base C (0/6); total (1/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CCTACCTGTGTCGGTTTGCGGTACGGGCACCTCTCACCTCGCTAGAGGCTTTTCTTGGCAGTGTGGAATCAGGAACTTCGCTACTACATTTCGCTCGCCATCACAGCTCAGCCTTATGGGAAACGGATTTGCCTATTTCCCAGCCTAACTGCTTGGACGCGGATATCCAATACCGCGCTTACCCTATCCTCCTGCGTCCCCCCATTGCTCAAATGGTGAGGAGGTGGTACAGGAATATCAACCTGTTGTCCA > NZ_CP034943/2979132‑2979383 | ccgaCCTGTGTCGGTTTGCGGTACGGGCACCTCTCACCTCGCTAGAGGCTTTTCTTGGCAGTGTGGAATCAGGAACTTCGCTACTACATTTCGCTCGCCATCACAGCTCAGCCTTATGGGAAACGGATTTGCCTATTTcc < 2:188763/137‑1 (MQ=1)ccgaCCTGTGTCGGTTTGCGGTACGGGCACCTCTCACCTCGCTAGAGGCTTTTCTTGGCAGTGTGGAATCAGGAACTTCGCTACTACATTTCGCTCGCCATCACAGCTCAGCCTTACGGGAAACGGATTTGCCTATTTcc < 2:913409/137‑1 (MQ=1)ccgaCCTGTGTCGGTTTGCGGTACGGGCACCTCTCACCTCGCTAGAGGCTTTTCTTGGCAGTGTGGAATCAGGAACTTCGCTACTACATGTCGCTCGCCATCACAGCTCAGCCTTATGGGAAACGGATTTGCCTATTTcc < 2:227200/137‑1 (MQ=1)ccgaCCTGTGTCGGTTTGCGGTACGGGCACCTCTCACCTCGCTAGAGGCTTTTCGTGGCAGTGTGGAATCAGGAACTTCGCTACTACATTTCGCTCGCCATCACAGCTCAGCCTTACGGGAAACGGATTTGCCTATTTcc < 2:1498480/137‑1 (MQ=0) gctgTACGGGCACCTCTCACCTCGCTAGAGGATTTTCTTGGCAGTGTGGAATCAGGAACTTCGCTACTACATTTCTCTCGCCATCACAGCTCAGCCTTACGGGAAACGGATTTGCCTATTTCCCAGCCTAACTGCTTGGa < 2:590944/137‑1 (MQ=0) accggCACCACGCACCGCCCGAGACGCATGTCTTGGCAGTGTTGACTCAGGAACTTCGCGACTACATGTCGCTCGCCAACACACCTCAGCCTTATGGGAAACGGATTTGCCTATGTCCCAGCCTAACTGCTTGGACGCgg < 1:2018214/137‑1 (MQ=1) tccccTCGCTAGAGGCTTTTCTGGGCAGGGTGGACTCAGGAACTTCGCTACTACCTTTCGCTCGCCATCACAGCGCAGCCTTACGGGAAACGGATTTGCCTATTTCCCAGCCTAACTGCTTGGACGCGGATATCCAATAc < 2:2255539/137‑1 (MQ=1) gcgagagGCTTTTCTTGGCAGTGTGGAATCAGGAACTTCGCTACTACATTTCGCTCGCCATCACAGCTCAGCCTTACGGGAAACGGATTTGCCTATTTCCCAGCCTAACTGCTTGGACGCGGATATCCAATACCGCGCtt < 2:374999/137‑1 (MQ=1) ttgtCTTGGCAGTGTGGAATCAGGAACTTCGCTACTACATGTCGCTCGCCATCACAGCTCAGCCTTACGGGAAACGGATTTGCCTATTTCCCAGCCTAACTGCTTGGACGCGGATATCCAATACCGCGCTTACCCTAtcc < 1:1359339/137‑1 (MQ=0) tgtttgCAGTGTGGAATCATGAACTTCGCTACTACATTTAGCTCGCCATCACAGCTCAGCCTTATGGGAAACGGATTTGCCTATTTCCCAGCCTAACTGCTTGGACGCGGATATACAATACCGCGCTTACCCTAtcctcc < 2:1084481/135‑1 (MQ=1) ttagCTACTACATTTCGCTCCAAATCACAGCTCAGAATAAACGGAAACGGATTTGCCTATATCCCAGCCTAACTGCTTGGACGCGGATATCCAATACCGCGCTAACCATATCCACCTGCGTCCCCCCATTGCTCAAATgg > 2:2096763/4‑140 (MQ=1) ctgaTGGGAAACGGATTTGCCTATTTCCCAGCCTCACTGCTTGGACGCGGATATCCAATACCGCGCTTACCCTATCCTCCTGCGTCCCCCCATTGCTCAACTGGTGAGGAGGTGGTACAGGAATATCAACCGGTTGTCCa < 2:1375410/137‑1 (MQ=0) ctgaTGGGAAACGGATTTGCCTATTTCCCAGCCTAACTGCTTGGACGCGGATATCCAATACCGCACTTACCCTATCCTCCGGCGTCCCCCCATTGCTCAAATGGTGAGGAGGTGGTACAGGAATATCAACCTGTTGTCCa < 2:2624300/137‑1 (MQ=0) | CCTACCTGTGTCGGTTTGCGGTACGGGCACCTCTCACCTCGCTAGAGGCTTTTCTTGGCAGTGTGGAATCAGGAACTTCGCTACTACATTTCGCTCGCCATCACAGCTCAGCCTTATGGGAAACGGATTTGCCTATTTCCCAGCCTAACTGCTTGGACGCGGATATCCAATACCGCGCTTACCCTATCCTCCTGCGTCCCCCCATTGCTCAAATGGTGAGGAGGTGGTACAGGAATATCAACCTGTTGTCCA > NZ_CP034943/2979132‑2979383 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |