BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP034943	2,991,227	0	T	G	32.4%	204.4 / 41.6	142	intergenic (+28/‑179)	gbsR/bslA	transcriptional regulator GbsR/biofilm‑surface layer protein BslA
Reads supporting (aligned to +/- strand): ref base T (29/67); new base G (46/0); total (75/67)
Fisher's exact test for biased strand distribution p-value = 1.07e-17
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 152 total aligned reads displayed.

TATACGAGCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGG  >  NZ_CP034943/2991090‑2991363

tataCGAGCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGtgtt                                                                                                                                          >  1:1853322/1‑140 (MQ=255)

 ataCGAGCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGTAAACCGGGCGtgttt                                                                                                                                         >  1:1466869/1‑140 (MQ=255)

 ataCGAGCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGtgttt                                                                                                                                         >  1:1026642/1‑140 (MQ=255)

  taCGAGCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGtgtttt                                                                                                                                        >  2:464421/1‑140 (MQ=255)

    cGAGCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACTCCTGGGAAACCGGGCGTGTTTTTg                                                                                                                                      >  2:1534589/1‑140 (MQ=255)

    cGAGCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGtgtttttt                                                                                                                                      >  1:622713/1‑139 (MQ=255)

    cGAGCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGtggttttt                                                                                                                                      >  1:843203/1‑139 (MQ=255)

    cGAGCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTg                                                                                                                                      >  2:1345513/1‑140 (MQ=255)

    cGAGCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGGTTTTg                                                                                                                                      >  1:1713391/1‑140 (MQ=255)

      aGCAACTGGAAAGCTCTAACGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGtt                                                                                                                                    <  2:656618/140‑1 (MQ=255)

      aGCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGtt                                                                                                                                    >  2:73837/1‑140 (MQ=255)

      aGCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGtttttttt                                                                                                                                    >  1:775198/1‑140 (MQ=255)

      aGCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGtttttttt                                                                                                                                    >  1:775457/1‑140 (MQ=255)

      aGCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTggt                                                                                                                                    >  1:502392/1‑138 (MQ=255)

       gCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCGTGGGAACCCGGGCGTTTGgttgttg                                                                                                                                   >  2:347869/1‑139 (MQ=255)

       gCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTGtttttta                                                                                                                                   >  2:1321988/1‑139 (MQ=255)

         accTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAAGCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACCAAGGAAAACCAAAACGCCTGGGACACCGGGCGTTGTTTTgttgtt                                                                                                                                 >  1:1790973/3‑140 (MQ=255)

         aaCTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCtt                                                                                                                                 <  2:1946554/140‑1 (MQ=255)

         aaCTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTTTTGtt                                                                                                                                 >  1:1791008/1‑140 (MQ=255)

           cTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTGTTCtttt                                                                                                                               >  2:1346652/1‑140 (MQ=255)

           cTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTGTTCtttt                                                                                                                               >  2:1055197/1‑140 (MQ=255)

               aaaGCTCTAAAGCTTACTAGGTTTGGCTGAAACGGCTGGCTGAAGCGGGGCAGCGCGGGGAAATTTTTAAATTTATACCGATTGAAACAACGTAAAAAAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTAt                                                                                                                           <  1:2440597/140‑1 (MQ=255)

                   ctctAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTTTTGTTTTTTATGTa‑a                                                                                                                      >  2:1079116/1‑140 (MQ=255)

                   ctctAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTGTTATTTTTTATGTa‑a                                                                                                                      >  2:845630/1‑140 (MQ=255)

                      tAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGGTTTTTTTGTTTTTTTTTtt‑atta                                                                                                                   >  1:1281442/1‑140 (MQ=255)

                             tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTGTTTTTTTTTTTTTA‑ATTAATAaaaa                                                                                                            >  2:1544097/1‑140 (MQ=255)

                                  tGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGa                                                                                                       >  2:61185/1‑140 (MQ=255)

                                  tGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTTTTCTTTTTTATGTA‑ATTAATAAAAAtatta                                                                                                       >  2:60255/1‑136 (MQ=255)

                                    aTTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTGTTTGGTTCTTTTTTATTTT‑ATTACTACAAATTTGaaa                                                                                                     >  2:1992395/1‑140 (MQ=255)

                                     ttGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTTTTGTTTTTTTTTTA‑ATTAATAAAAAattttaaa                                                                                                    >  1:71672/1‑135 (MQ=255)

                                       ggCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTTTTGTTTTTTATGTA‑ATTAATACAAAATTTAAAAAt                                                                                                  >  2:2387964/1‑140 (MQ=255)

                                        gCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTTTTGTTTTTTATTTA‑ATTAATAAAAAATTTaaaaaaa                                                                                                 >  1:405731/1‑138 (MQ=255)

                                          tGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTTTTGTTTTTTATTTT‑ATTAATAAAAAATTGaaaaaaaag                                                                                               >  1:1839206/1‑136 (MQ=255)

                                                  ccggCTGACTGGGTGCAGTGCGGGTAATTTTTTAATTTTATACCGATTGAAACAAAGTAAAAAAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAAc                                                                                      <  1:310959/137‑1 (MQ=255)

                                                    tGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGTGAAACCGGGCGTGTTTTTTTTTTTTTTTTTTTT‑ATTATTAAAAAATTTAAAAAAAA‑GGGcaaaagca                                                                                    >  1:893399/1‑137 (MQ=255)

                                                              gTGCAGAGCGGTTAAATTTTTAAATTTATACCTATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACt                                                                          <  2:893399/140‑1 (MQ=255)

                                                              gTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGACTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTTTGTATATTATTAAAAATTGTAAAATAAG‑GGGAAAAAAATCCAATTTat                                                                           >  1:1944443/1‑139 (MQ=255)

                                                                  agagCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCa                                                                      <  2:1494269/140‑1 (MQ=255)

                                                                  agagCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCa                                                                      <  2:426391/140‑1 (MQ=255)

                                                                   gagCGGGTAAATTTTTAAATTTATCCCGATTTAAAAAAAGAAAAAAAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCaa                                                                     <  1:1092358/140‑1 (MQ=255)

                                                                         ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTTTTATTTTTTATTTA‑AATACTAAAAATTTGAAAAAAAC‑CGGAAAAACATGCCAGTTACTTCCAAAATAtt                                                               >  2:1943374/1‑140 (MQ=255)

                                                                         ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTGTTTTTTTTTTA‑ATTACTACAAATTTGCAAAATAC‑GGGAAAAACATCCCATTTAGTTCGAAAAGAtt                                                               >  2:2554559/1‑140 (MQ=255)

                                                                         ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTGTTTTTTATGTA‑ATTTCTACAAAATTGAAAAATAC‑GGGAAAAAAATACCATTTTATTACAAAATAtt                                                               >  2:2457556/1‑140 (MQ=255)

                                                                         ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTTTTTTTTTTTTTGTT‑ATTTGTTAAAATTTTTAAAATAA‑GGGAAAAAAATACCATATTATTCCAAAATAtt                                                               >  1:1990535/1‑140 (MQ=255)

                                                                         ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTTTTGTTTTTTATGTA‑ATTAATACAAATTTGAAAAATAA‑GGGCAAAAAATCCCATTTACTTGCAAAATAtt                                                               >  2:101709/1‑140 (MQ=255)

                                                                         ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTGTTTTTTTTTTTTTT‑TTTACTACCAATTTTTAAAAAAA‑TGGCAAAAAATCCCAATTACTTACAAAAAAtt                                                               >  1:2646093/1‑140 (MQ=255)

                                                                         ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTGTTGTTTTTTATGTA‑ATTAAGAAAAATTTTTAAAAAAC‑GGGAAAAACATACCATTTAATTCCCAAATAtt                                                               >  2:191465/1‑140 (MQ=255)

                                                                         ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTGTTCTTTTTTTTTTA‑AATAAAAAAAAATTGAAAAAAAA‑CGGAAAAAAATCCCATTTAATTGCAAAATAtt                                                               >  2:1011940/1‑140 (MQ=255)

                                                                         ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTGTTTGGTGTTTTTTATTTA‑ATTAGAACAAATTTTAAAAATTG‑AGGAAAAACATAACAGTTTCTTTCAAAATAtt                                                               >  2:1287096/1‑140 (MQ=255)

                                                                         ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGGTTTTTTTGGTTTTTTTTTT‑ATTATTAAAAAATTTTAAAAAAA‑AGGACAAAAAAACCAGATAATTGCAAAATAtt                                                               >  1:53328/1‑140 (MQ=255)

                                                                         ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGACTGGGAAACCGTGCGTGGTTTTGTTGTTTTTTATGTA‑ATTAATACAAAATTGAAAAATTA‑GGGAAAAACATCCCCTTTTCTTCAAAAATAtt                                                               >  2:1130286/1‑140 (MQ=255)

                                                                               ttttAAATTTATCCCGTTTGAAACAAACTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATgg                                                         <  1:13366/140‑1 (MQ=255)

                                                                               ttttAAATTTATACCTATTGAAACACAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATgg                                                         <  2:1519453/140‑1 (MQ=255)

                                                                               ttttAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATgg                                                         <  2:2043511/140‑1 (MQ=255)

                                                                               ttttAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATgg                                                         <  2:404856/140‑1 (MQ=255)

                                                                               ttttAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATgg                                                         <  2:2501117/140‑1 (MQ=255)

                                                                                         ctaCCGATAGAACCAAACCAAAACAAACCCGCCTGGGAAACCCGTCGTTTTTTACATATTTTTTATGAT‑ACTACTACAAATTAGAAAAATAC‑CGGAACCACATCCCATTTACTTCCAAAATATTTCATGGTAATTTTATg                                               <  2:2694059/139‑1 (MQ=255)

                                                                                         atcccGATTGAAACAAAGTAACACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATg                                               <  1:1338904/137‑1 (MQ=255)

                                                                                         ataCCGATTGAAACAAAGTAACACAAAAACGCCTGGGAAACCGGGCGATTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATg                                               <  1:1992395/140‑1 (MQ=255)

                                                                                         ataCCGATCCAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATg                                               <  1:797153/140‑1 (MQ=255)

                                                                                              gATTCAAACAAAGTAAAAAAAACACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGt                                          <  1:101709/140‑1 (MQ=255)

                                                                                               aatGAAACAAAGTAAACCAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTa                                         <  2:1385519/138‑1 (MQ=255)

                                                                                               aTTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTGTTTTTTATGTA‑ATTAATACAAATTTGAAAAATAC‑CGGAAAAAGATGCCAGTTACTTCCAATATATTGGATGGTAATTTTATGTAGGtt                                         >  2:1622741/1‑139 (MQ=255)

                                                                                               aTTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTTCTACAAATTTTAAAAATAA‑GGGAAAAACATAACAATTTATTAAAAAATATTTTTTGTTAAATTTATTTATGTa                                         >  2:2317014/1‑140 (MQ=255)

                                                                                               aTTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTa                                         <  2:679345/140‑1 (MQ=255)

                                                                                               aTTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTGTTTTTTTCTTTTTTATTTA‑ATTAATACAAATTTGAAAAATAA‑GGGAAAAACATCTCATTTAATTAAAAAATATTTGATTGTAAGTTTAACTAGGTa                                         >  2:1562151/1‑140 (MQ=255)

                                                                                               aTTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTGTTTTGTTGTTTTTTTTGTA‑ATTAATACAAAATTGAAAAATAC‑CGGGAAAAAATCCCCATTACTTACAAAATATTTGAAGGTTAGTTTATGTGGGTa                                         >  2:1713735/1‑140 (MQ=255)

                                                                                               aTTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGGTTTTTTTTTTTTTTTTTTA‑ATTAATACAAAAATGTAAAAAAA‑AGGAAAAAAATCACAATTAGTTACACAATAATTTGTTGTTATTTTAtttttgtg                                         >  1:1741115/1‑133 (MQ=255)

                                                                                               aTTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGGGTTTGTTGTTTTTTTTGTA‑ATTACTACAAATTTTAAAAAAAA‑GGGCAAAACAACACCATTAATTCCAAAATATTTGATGGTAATTTTATGTAGGTa                                         >  2:1409132/1‑140 (MQ=255)

                                                                                                   aaaaaaAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAAt                                     <  2:622713/140‑1 (MQ=255)

                                                                                                   aaaaaaAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAAt                                     <  1:941855/140‑1 (MQ=255)

                                                                                                   aaaCAAAGTAAAACAAACACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAAt                                     <  1:1348422/140‑1 (MQ=255)

                                                                                                         aGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTGTTTTTTTTTATTTA‑AATAATACAAATTTGTAAAATACGGGGAAAAAAAACCAATTTA‑TTGCCAAATATTTTTTGGTTAATTTTTTTGTGTTAAATTTTTAt                               >  2:180423/1‑140 (MQ=255)

                                                                                                             caacaaacaCGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑AGTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                           <  2:1215753/139‑1 (MQ=255)

                                                                                                             aaacaaacACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                           <  1:874586/140‑1 (MQ=255)

                                                                                                             aaaCAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                           <  1:1544097/140‑1 (MQ=255)

                                                                                                             aaaCAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                           <  2:1082216/140‑1 (MQ=255)

                                                                                                             aaaCAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                           <  1:1079116/140‑1 (MQ=255)

                                                                                                             aaaCAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                           <  1:60255/140‑1 (MQ=255)

                                                                                                             aaaCAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACGACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                           <  2:1447354/140‑1 (MQ=255)

                                                                                                              aaCAAAAACGCCTGGGAAACCGGGCGTTTTTTTTTTCTTTTTTATGTA‑ATTACTACAAAATTGAAAAATAC‑GGGGAAAAAATCCCATTTACTTCCAAAATATTTGTTGGTAATTTTATGTAGGTAAAATTTTTTTTTTGc                          >  2:1971033/1‑140 (MQ=255)

                                                                                                              aaCAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGc                          <  2:1855228/140‑1 (MQ=255)

                                                                                                              aaCAAAAACGCCGGGGAAACCGGGCGATTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGc                          <  2:1855073/140‑1 (MQ=255)

                                                                                                                cAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTGTTTTTTATTTA‑ATTACTACAAAATTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATTGTAATTTTATGTATGTTAAATTTGTAttttggcg                        >  2:1979455/1‑135 (MQ=255)

                                                                                                                     aCGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCag                   <  2:2208687/140‑1 (MQ=255)

                                                                                                                     aCGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCag                   <  2:1741115/140‑1 (MQ=255)

                                                                                                                     aCGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCag                   <  2:317510/140‑1 (MQ=255)

                                                                                                                     aCGCCTGGGAAACCGGGCGTTTTTTTGGTGTTTTTTATTTA‑ATTAATACAAATTTTAAAAATAC‑GGGCAAAAAATCCCAATTAATTCCAAAATATTTTATGGTAATTTTATTTAGGTAAAATTTTTATTTTGCCGttaat                   >  2:1778763/1‑137 (MQ=255)

                                                                                                                       gCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                 <  2:1651803/140‑1 (MQ=255)

                                                                                                                       gCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                 <  1:1055197/140‑1 (MQ=255)

                                                                                                                        ccTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAgagg                <  1:1490641/140‑1 (MQ=255)

                                                                                                                            ggAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGt            <  1:1593765/140‑1 (MQ=255)

                                                                                                                            ggAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGt            <  1:617658/140‑1 (MQ=255)

                                                                                                                               aaCCGGTCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGaa         <  2:1236369/140‑1 (MQ=255)

                                                                                                                               aaCCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGaa         <  2:284243/140‑1 (MQ=255)

                                                                                                                               aaCCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGaa         <  1:707478/140‑1 (MQ=255)

                                                                                                                                 ccGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGaaaa       <  1:2387964/140‑1 (MQ=255)

                                                                                                                                      cGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg  <  1:1346652/140‑1 (MQ=255)

                                                                                                                                      cGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg  <  1:1211213/140‑1 (MQ=255)

                                                                                                                                      agTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAA‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg  <  1:1086943/139‑1 (MQ=255)

TATACGAGCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATAC‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGG  >  NZ_CP034943/2991090‑2991363

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`