BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP034943	2,991,236	0	C	G	28.4%	250.6 / 30.7	130	intergenic (+37/‑170)	gbsR/bslA	transcriptional regulator GbsR/biofilm‑surface layer protein BslA
Reads supporting (aligned to +/- strand): ref base C (13/70); new base G (33/0); total (59/71)
Fisher's exact test for biased strand distribution p-value = 1.03e-18
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 132 total aligned reads displayed.

AACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAAT  >  NZ_CP034943/2991099‑2991374

aaCTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTgtttttgttttt                                                                                                                                              >  1:1790519/1‑140 (MQ=255)

aaCTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTTTTGtt                                                                                                                                              >  1:1791008/1‑140 (MQ=255)

aaCTGGAAAGCTCTAAAGCTTACTATGAGTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATCCCGATTGAAACAAAGTACAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCtt                                                                                                                                              <  2:1946516/140‑1 (MQ=255)

  cTGGAATTCTCTAACGCTTACTCTGTGTGGATGAACGGGCTTGCTGCCGCGGTGCAGCGGGGGGAAATTTTTAAATTAATCCCGATTGAAACAAATTAAAAAAAACACGCCTGGGAAACCGGGCGTTTTTTTGTTCtttt                                                                                                                                            <  1:1321988/140‑1 (MQ=255)

  cTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTGTTCtttt                                                                                                                                            >  2:1346652/1‑140 (MQ=255)

  cTGGAAAGCTCTAAAGCTTACTATGATGGGGTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAATGTAAAACAAAAACGCCTGGTAAACCGGGCGTTTTGTTGTTGtttt                                                                                                                                            >  1:628814/1‑140 (MQ=255)

      aaaGCTCTAAAGCTTACTAGGTTTGGCTGAAACGGCTGGCTGAAGCGGGGCAGCGCGGGGAAATTTTTAAATTTATACCGATTGAAACAACGTAAAAAAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTAt                                                                                                                                        <  1:2440597/140‑1 (MQ=255)

          ctctAAAGCTTACTATGATTGGCTGAAACTGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTTTTATTTTTTATTTa‑a                                                                                                                                   >  2:1447176/1‑140 (MQ=255)

          ctctAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTGTTTTTTATGtta                                                                                                                                    >  2:1750487/1‑138 (MQ=255)

          ctctAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTTTTGTTTTTTATGTa‑a                                                                                                                                   >  2:1079116/1‑140 (MQ=255)

          ctctAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTGTTATTTTTTATGTa‑a                                                                                                                                   >  2:845630/1‑140 (MQ=255)

             tAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGGTTTTTTTGTTTTTTTTTtt‑atta                                                                                                                                >  1:1281442/1‑140 (MQ=255)

                    tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTTTTGTTTTTTTTTtt‑attataaaaaa                                                                                                                         >  1:1187655/1‑133 (MQ=255)

                    tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTTTTATTTTTTATGTA‑ATTACTAC‑aaa                                                                                                                        >  2:1543816/1‑140 (MQ=255)

                    tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTGTTTTTTTTTTTTTA‑ATTAATAa‑aaa                                                                                                                        >  2:1544097/1‑140 (MQ=255)

                         tGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTGTTTTTTATTTA‑ATTAATAC‑AAAtttta                                                                                                                   >  2:874586/1‑138 (MQ=255)

                         tGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTTTTCTTTTTTATGTA‑ATTAATAA‑AAAtatta                                                                                                                   >  2:60255/1‑136 (MQ=255)

                           aTTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTGTTTGGTTCTTTTTTATTTT‑ATTACTAC‑AAATTTGaaa                                                                                                                 >  2:1992395/1‑140 (MQ=255)

                            ttGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTTTTGTTTTTTTTTTA‑ATTAATAA‑AAAattttaaa                                                                                                                >  1:71672/1‑135 (MQ=255)

                              ggCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTTTTGTTTTTTATGTA‑ATTAATAC‑AAAATTTAAAAAt                                                                                                              >  2:2387964/1‑140 (MQ=255)

                               gCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTTTTGTTTTTTATTTA‑ATTAATAA‑AAAATTTaaaaaaa                                                                                                             >  1:405731/1‑138 (MQ=255)

                                 tGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTTTTGTTTTTTATTTT‑ATTAATAA‑AAAATTGaaaaaaaag                                                                                                           >  1:1839206/1‑136 (MQ=255)

                                         cTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTTTTTTTTTTTATTTA‑ATTACTAA‑CAAATTGAAAAATA‑A‑GGGaaaaaa                                                                                                 >  2:1014460/1‑139 (MQ=255)

                                           tGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGTGAAACCGGGCGTGTTTTTTTTTTTTTTTTTTTT‑ATTATTAA‑AAAATTTAAAAAAA‑A‑GGGcaaaagca                                                                                               >  1:893399/1‑137 (MQ=255)

                                           tGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACAt                                                                                               <  1:1345513/140‑1 (MQ=255)

                                                    ggTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTAc                                                                                      <  2:637015/140‑1 (MQ=255)

                                                     gTGCAGAGCGGTTAAATTTTTAAATTTATACCTATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACt                                                                                     <  2:893399/140‑1 (MQ=255)

                                                     gTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGACTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTTTGTATATTATTAA‑AAATTGTAAAATAA‑G‑GGGAAAAAAATCCAATTTat                                                                                      >  1:1944443/1‑139 (MQ=255)

                                                      tGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTTTTGTTTTTTATGTA‑ATTACTAA‑AAATTTGAAAAATA‑C‑GGGAAAAAAATCCAATTTAAtt                                                                                    >  2:1964226/1‑140 (MQ=255)

                                                         agagCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCa                                                                                 <  2:1494269/140‑1 (MQ=255)

                                                         agagCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCa                                                                                 <  2:2471416/140‑1 (MQ=255)

                                                          gagCGGGTAAATTTTTAAATTTATCCCGATTTAAAAAAAGAAAAAAAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCaa                                                                                <  1:1092358/140‑1 (MQ=255)

                                                                ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTTTTATTTTTTATTTA‑AATACTAA‑AAATTTGAAAAAAA‑C‑CGGAAAAACATGCCAGTTACTTCCAAAATAtt                                                                          >  2:1943374/1‑140 (MQ=255)

                                                                ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTGTTTTTTTTTTA‑ATTACTAC‑AAATTTGCAAAATA‑C‑GGGAAAAACATCCCATTTAGTTCGAAAAGAtt                                                                          >  2:2554559/1‑140 (MQ=255)

                                                                ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTGTTTTTTATTTT‑ATTAATAC‑AAATTTTAAAAATA‑A‑GGGAAAAAAAAACCAATTTATTGCAAAATAtt                                                                          >  2:1348422/1‑140 (MQ=255)

                                                                ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTGTTTTTTATGTA‑ATTTCTAC‑AAAATTGAAAAATA‑C‑GGGAAAAAAATACCATTTTATTACAAAATAtt                                                                          >  2:2457556/1‑140 (MQ=255)

                                                                ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTGGTTGTTTTTTATGTA‑AATACTAC‑CACATTGAAAAATACC‑GGGAAAAAGA‑GCCATTTACTTGGAAAaaatg                                                                          >  2:1279984/1‑139 (MQ=255)

                                                                ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTTTTTTTTTTTTTGTT‑ATTTGTTA‑AAATTTTTAAAATA‑A‑GGGAAAAAAATACCATATTATTCCAAAATAtt                                                                          >  1:1990535/1‑140 (MQ=255)

                                                                ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTTTTGTTTTTTATGTA‑ATTAATAC‑AAATTTGAAAAATA‑A‑GGGCAAAAAATCCCATTTACTTGCAAAATAtt                                                                          >  2:101709/1‑140 (MQ=255)

                                                                ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTGTTTTTTTTTTTTTT‑TTTACTAC‑CAATTTTTAAAAAA‑A‑TGGCAAAAAATCCCAATTACTTACAAAAAAtt                                                                          >  1:2646093/1‑140 (MQ=255)

                                                                ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTGTTGTTTTTTATGTA‑ATTAAGAA‑AAATTTTTAAAAAA‑C‑GGGAAAAACATACCATTTAATTCCCAAATAtt                                                                          >  2:191465/1‑140 (MQ=255)

                                                                ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTGTTCTTTTTTTTTTA‑AATAAAAA‑AAAATTGAAAAAAA‑A‑CGGAAAAAAATCCCATTTAATTGCAAAATAtt                                                                          >  2:1011940/1‑140 (MQ=255)

                                                                ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTGTTTGGTGTTTTTTATTTA‑ATTAGAAC‑AAATTTTAAAAATT‑G‑AGGAAAAACATAACAGTTTCTTTCAAAATAtt                                                                          >  2:1287096/1‑140 (MQ=255)

                                                                ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGGTTTTTTTGGTTTTTTTTTT‑ATTATTAA‑AAAATTTTAAAAAA‑A‑AGGACAAAAAAACCAGATAATTGCAAAATAtt                                                                          >  1:53328/1‑140 (MQ=255)

                                                                ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGACTGGGAAACCGTGCGTGGTTTTGTTGTTTTTTATGTA‑ATTAATAC‑AAAATTGAAAAATT‑A‑GGGAAAAACATCCCCTTTTCTTCAAAAATAtt                                                                          >  2:1130286/1‑140 (MQ=255)

                                                                      ttttAAATTTATCCCGTTTGAAACAAACTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATgg                                                                    <  1:13366/140‑1 (MQ=255)

                                                                      ttttAAATTTATACCTATTGAAACACAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATgg                                                                    <  2:1519453/140‑1 (MQ=255)

                                                                      ttttAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATgg                                                                    <  2:404856/140‑1 (MQ=255)

                                                                                ctaCCGATAGAACCAAACCAAAACAAACCCGCCTGGGAAACCCGTCGTTTTTTACATATTTTTTATGAT‑ACTACTAC‑AAATTAGAAAAATA‑C‑CGGAACCACATCCCATTTACTTCCAAAATATTTCATGGTAATTTTATg                                                          <  2:2694059/139‑1 (MQ=255)

                                                                                ataCCGATTGAAACAAAGTAACACAAAAACGCCTGGGAAACCGGGCGATTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATg                                                          <  1:1992395/140‑1 (MQ=255)

                                                                                ataCCGATCCAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATg                                                          <  1:797153/140‑1 (MQ=255)

                                                                                     gATTCAAACAAAGTAAAAAAAACACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGt                                                     <  1:101709/140‑1 (MQ=255)

                                                                                      aatGAAACAAAGTAAACCAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTa                                                    <  2:1385519/138‑1 (MQ=255)

                                                                                      aTTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTGTTTTTTATGTA‑ATTAATAC‑AAATTTGAAAAATA‑C‑CGGAAAAAGATGCCAGTTACTTCCAATATATTGGATGGTAATTTTATGTAGGtt                                                    >  2:1622741/1‑139 (MQ=255)

                                                                                      aTTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTTCTAC‑AAATTTTAAAAATA‑A‑GGGAAAAACATAACAATTTATTAAAAAATATTTTTTGTTAAATTTATTTATGTa                                                    >  2:2317014/1‑140 (MQ=255)

                                                                                      aTTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTa                                                    <  2:679345/140‑1 (MQ=255)

                                                                                      aTTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTGTTTTGTTGTTTTTTTTGTA‑ATTAATAC‑AAAATTGAAAAATA‑C‑CGGGAAAAAATCCCCATTACTTACAAAATATTTGAAGGTTAGTTTATGTGGGTa                                                    >  2:1713735/1‑140 (MQ=255)

                                                                                      aTTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGGTTTTTTTTTTTTTTTTTTA‑ATTAATAC‑AAAAATGTAAAAAA‑A‑AGGAAAAAAATCACAATTAGTTACACAATAATTTGTTGTTATTTTAtttttgtg                                                    >  1:1741115/1‑133 (MQ=255)

                                                                                          aaaaaaAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAAt                                                <  2:622713/140‑1 (MQ=255)

                                                                                          aaaCAAAGTAAAACAAACACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAAt                                                <  1:1348422/140‑1 (MQ=255)

                                                                                          aaaCAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAAt                                                <  1:513089/140‑1 (MQ=255)

                                                                                          aaaCAAAGAAAAACAAAAACGCCTGGTAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑TAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCATAATATTTGCTGGTAATTTTATGTAGGTAAAAt                                                <  2:606113/140‑1 (MQ=255)

                                                                                                aGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTGTTTTTTTTTATTTA‑AATAATAC‑AAATTTGTAAAATA‑CGGGGAAAAAAAACCAATTTA‑TTGCCAAATATTTTTTGGTTAATTTTTTTGTGTTAAATTTTTAt                                          >  2:180423/1‑140 (MQ=255)

                                                                                                aGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTGTTGGTTTTTAATTA‑AATACTAC‑AAAATTGAAAAATA‑C‑GGGAAAAAAAAACCATTTGCGTACAAAAAAATTTATGGTAATTTTATGTATGTTAAAttttttt                                          >  2:1068060/1‑136 (MQ=255)

                                                                                                    caacaaacaCGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑AGTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                      <  2:1215753/139‑1 (MQ=255)

                                                                                                    aaacaaacACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                      <  1:874586/140‑1 (MQ=255)

                                                                                                    aaacaaacACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                      <  1:1695259/140‑1 (MQ=255)

                                                                                                    aaacaaacACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                      <  1:1543816/140‑1 (MQ=255)

                                                                                                    aaacaaacACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                      <  1:180423/140‑1 (MQ=255)

                                                                                                    aaaCAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                      <  2:364084/140‑1 (MQ=255)

                                                                                                    aaaCAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                      <  1:73837/140‑1 (MQ=255)

                                                                                                    aaaCAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                      <  1:61185/140‑1 (MQ=255)

                                                                                                    aaaCAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                      <  1:1079116/140‑1 (MQ=255)

                                                                                                    aaaCAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                      <  2:1082216/140‑1 (MQ=255)

                                                                                                    aaaCAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                      <  1:1544097/140‑1 (MQ=255)

                                                                                                    aaaCAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACGAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                      <  2:1447354/140‑1 (MQ=255)

                                                                                                     aaCAAAAACGCCTGGGAAACCGGGCGTTTTTTTTTTCTTTTTTATGTA‑ATTACTAC‑AAAATTGAAAAATA‑C‑GGGGAAAAAATCCCATTTACTTCCAAAATATTTGTTGGTAATTTTATGTAGGTAAAATTTTTTTTTTGc                                     >  2:1971033/1‑140 (MQ=255)

                                                                                                     aaCAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGc                                     <  2:1855228/140‑1 (MQ=255)

                                                                                                     aaCAAAAACGCCGGGGAAACCGGGCGATTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGc                                     <  2:1855073/140‑1 (MQ=255)

                                                                                                       cAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTGTTTTTTATTTA‑ATTACTAC‑AAAATTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATTGTAATTTTATGTATGTTAAATTTGTAttttggcg                                   >  2:1979455/1‑135 (MQ=255)

                                                                                                         aaaaCGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGtt                                 <  2:1187655/140‑1 (MQ=255)

                                                                                                          aaaCGCCTGGGAAACCGGGCGTGGTTTTGTTGTTTTTTATGTA‑ATTAATACAAAATTTAAAAAAAA‑C‑GGG‑AAAACATACCATATTATTCCAAAATATTTTTTGGTAAATTTAGTGAGGTACAATTTGTATTTTGGCGttg                                >  2:1593765/1‑139 (MQ=255)

                                                                                                            aCGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCag                              <  2:2208687/140‑1 (MQ=255)

                                                                                                            aCGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCag                              <  2:1741115/140‑1 (MQ=255)

                                                                                                            aCGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCag                              <  2:317510/140‑1 (MQ=255)

                                                                                                              gCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                            <  1:1055197/140‑1 (MQ=255)

                                                                                                              gCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                            <  2:1651803/140‑1 (MQ=255)

                                                                                                               ccTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTTTGTAGGTAAAATTTGTATTTGGCCGTTCAgagg                           <  1:1033877/140‑1 (MQ=255)

                                                                                                               ccTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAgagg                           <  1:1490641/140‑1 (MQ=255)

                                                                                                                   ggAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGt                       <  1:617658/140‑1 (MQ=255)

                                                                                                                      aaCCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGaa                    <  2:284243/140‑1 (MQ=255)

                                                                                                                        ccGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGaaaa                  <  1:2387964/140‑1 (MQ=255)

                                                                                                                             cGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg             <  1:1346652/140‑1 (MQ=255)

                                                                                                                             cGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg             <  1:918305/140‑1 (MQ=255)

                                                                                                                             agTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑A‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg             <  1:1086943/139‑1 (MQ=255)

                                                                                                                                  ttttGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGc        <  2:2056562/140‑1 (MQ=255)

                                                                                                                                       ttCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGaa   <  2:1334977/140‑1 (MQ=255)

                                                                                                                                        tCTTTTTTATGTT‑ATGACTTC‑AAATTTGAAAAAGA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAat  <  1:1958102/140‑1 (MQ=255)

                                                                                                                                        tCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAat  <  2:53328/140‑1 (MQ=255)

                                                                                                                                        tCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAat  <  2:1281442/140‑1 (MQ=255)

AACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTA‑ATTACTAC‑AAATTTGAAAAATA‑C‑GGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAAT  >  NZ_CP034943/2991099‑2991374

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`