Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP034943634,0540CG40.0% 127.8 / 44.1 108E573Q (GAA→CAA) ‡EO946_RS03330ABC‑F family ATP‑binding cassette domain‑containing protein
Reads supporting (aligned to +/- strand):  ref base C (23/40);  new base G (42/0);  total (68/40)
Fisher's exact test for biased strand distribution p-value = 6.36e-13
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 113 total aligned reads displayed.

CATGGATGGCTTGTACCTTTTCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGC‑TTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCATTTTCTCCAATTCAAGCTGCTCTGTTTTTTTCTCCGTATAATAATC  >  NZ_CP034943/633919‑634192
                                                                                                                                       |                                                                                                                                           
cATGGATGGCTTGTACCTTTTCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGgtgtttg                                                                                                                                         >  1:2406473/1‑139 (MQ=255)
      tggCTTGTACCTTTTCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTTGGGTTATTTCTTTTTc                                                                                                                                   >  2:1674159/1‑140 (MQ=255)
      tggCTTGTACCTTTTCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGGGTTGTTTGtttttg                                                                                                                                   >  1:2757619/1‑139 (MQ=255)
      tggCTTGTACCTTTTCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCtttttg                                                                                                                                   >  2:1222865/1‑139 (MQ=255)
      tggCTTGTACCTTTTCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTc                                                                                                                                   >  2:167944/1‑140 (MQ=255)
             tACCTTTTCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCAt                                                                                                                                >  2:2117066/1‑136 (MQ=255)
             tACCTTTTCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCAt                                                                                                                                <  1:2117066/136‑1 (MQ=255)
             tACCTTTTCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGGTGGTTGTTTTTGCATTCtt                                                                                                                            >  1:2758143/1‑140 (MQ=255)
                  tttCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGGTGTTTGTTTTTAGATTCtttttat                                                                                                                       >  1:538686/1‑138 (MQ=255)
                   ttCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGGGTTGTTTGTTTTTACAATATTTttatt                                                                                                                      >  2:760836/1‑140 (MQ=255)
                   ttCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGGGTTGTGTGTGTTTTGATTCtttttagt                                                                                                                      >  1:2521414/1‑137 (MQ=255)
                   ttCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGGGTTCTTTGTTTTTACATTAATTttgtt                                                                                                                      >  2:1273477/1‑140 (MQ=255)
                   ttCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGGGTGGGTTGTTTTTGCATTATTTttgtt                                                                                                                      >  2:824610/1‑140 (MQ=255)
                   ttCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTGTTTGTTTTTGCATTATTTttatt                                                                                                                      >  1:2199895/1‑140 (MQ=255)
                   ttCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTGTTTGTTTTTGCATTAATTttatt                                                                                                                      >  2:1268510/1‑140 (MQ=255)
                   ttCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTAGTTATTTTTACATTCtttttaat                                                                                                                      >  2:358221/1‑137 (MQ=255)
                   ttCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGGTCTTTCTTTTTGCATTCTTTttgtt                                                                                                                      >  2:824468/1‑140 (MQ=255)
                   ttCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTGGGGGTTCTTTGTTTTTGGATTTTTTttgtt                                                                                                                      >  2:2667366/1‑140 (MQ=255)
                   ttCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTGGGCGTTGTTTGTTTTTACAATAtttttttt                                                                                                                      >  1:1012635/1‑140 (MQ=255)
                   ttCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTGGGCGTGGTTTGTTTTTGCATTCTTTttctt                                                                                                                      >  1:700034/1‑140 (MQ=255)
                   ttCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACGAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCATTTTCTTCAATCCGAGGGAGTCGTGGGGGTTCTTTGTGTTTCGATTCgttttggt                                                                                                                      >  2:2177703/1‑137 (MQ=255)
                         gTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTGCATTCTTTTTATTGTTCat                                                                                                                >  2:1611875/1‑140 (MQ=255)
                           cTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACTGAGTCGTTGGCGTTGTTTATTTTTCCATTATTTTTCTTATTAatat                                                                                                              >  2:672484/1‑140 (MQ=255)
                             tGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGGTGTTTGTTTTTCCCATGTTTTTGTTGTTGATTTGa                                                                                                            >  1:2200609/1‑140 (MQ=255)
                                  gATTTCCGGATCACATAGCAAGTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCGTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGtt                                                                                                       <  2:2276837/140‑1 (MQ=255)
                                   aTTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTGTTTTTACATTATTTTTATTGTTCATATGAAAGttt                                                                                                      >  1:163410/1‑140 (MQ=255)
                                       ccGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAg                                                                                                  <  1:2811606/140‑1 (MQ=255)
                                        cGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCACTGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGt                                                                                                 <  1:1291866/140‑1 (MQ=255)
                                        cGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGt                                                                                                 <  1:760836/140‑1 (MQ=255)
                                        cGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGt                                                                                                 <  1:661270/140‑1 (MQ=255)
                                        cGGATCACATAGCAATTCATCGTTATGACGAATGTTTACTACAATGGTTTGAACAGTGGCTTCAATTTCATCACTCCGACGGAGTCGTTGGCGTTCTTTCTTTGTCCATTCTATTTATTCTTCATATGAACGTTTTGAGt                                                                                                 <  1:593143/140‑1 (MQ=255)
                                        cGGAACACATAGCAATGCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGCGACGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGt                                                                                                 <  2:2004060/140‑1 (MQ=255)
                                             cacaTAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTGTTTATTTTTACATTCTTTTTCTTCTTAATATGAACGGTTTGAGTCAggg                                                                                            >  2:1361852/1‑139 (MQ=255)
                                             cacaTAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGc                                                                                            <  1:13004/140‑1 (MQ=255)
                                             cacaTAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGGGGGTTCTTGTTCCATTCGGTTTCTTGGTCATATGCACGTTTTGATTCAggg                                                                                            >  2:1885371/1‑139 (MQ=255)
                                                       ttCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGGGGGGGTTGTTTTTGCATTGTTTTTGTTGTTGAAATGAACGTTTTTTTTGAGGC‑TTAACCGaaa                                                                                 >  1:1178839/1‑139 (MQ=255)
                                                       ttCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTGTTTCTTTTTGCATTGTTTTTATTATTAATATGAACGTTTTGAGTCAGGG‑TTaaaccaac                                                                                 >  2:1068355/1‑134 (MQ=255)
                                                       ttCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGGTGGTTCTTTTTTGATTATTTTTATTGTTCATATGTACGTTTTTAGGAGGGC‑TTTAACGaac                                                                                 >  1:2265799/1‑139 (MQ=255)
                                                       ttCATCGTTATGACTAATGTTTTCTTCAATGGTGTGAACCGTGGCTTCAATTTCTTCAATCCGACGGTGTCGTGGGGGGGGTTTTTTTTTGCCATGGTTTGGGTGTTCATATGGACCGTTTGAGTCCGGCGTTAAccaac                                                                                  >  1:802739/1‑137 (MQ=255)
                                                         cATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGGGGGGTTTTTTTTTGGATTGTTTTTGTTGTTGATATTAAAGTTTTTTGTGAGGC‑TTTAACGAACCa                                                                               >  1:2459686/1‑140 (MQ=255)
                                                         cATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTGTTTCGTTTTCCAGTCTTTTTATTCTTCATATGAAAGTTTTTAGTCAGGC‑TTAACCGAAGCa                                                                               >  2:1386552/1‑140 (MQ=255)
                                                         cATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGGTGTTTGTTTTTGGATTCTTTTTGTTATTCATATGAACGTTTTGAGTCAGGC‑TTTAACGAAGcg                                                                               >  1:1196614/1‑139 (MQ=255)
                                                         cATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGGTGTTTCTTTTTGCATTGTTTTTATTGTTAATATGTAAGTTTTTAGTCAGGC‑TTAAACGAAACa                                                                               >  1:2636389/1‑140 (MQ=255)
                                                         cATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTGGGGGGGGGTTGTGTTTGCAGTGTTTTTGTTGTTGATATGGACGTTTTTTGTGAGGCGTTAACCaaaca                                                                                >  1:1716768/1‑138 (MQ=255)
                                                          aTCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTGTTTCTTTTTCCATTGTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGC‑TTAACCGAATCAg                                                                              >  2:1986085/1‑140 (MQ=255)
                                                            cGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTGGGCGGTCATTCTTTTTGCATTATTTTTATTCTTGATATGAAAGATTTGTGTAATGA‑TTAAACGAAgaacgg                                                                            >  2:1628479/1‑135 (MQ=255)
                                                                 tGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTGTTTGTTTTTCAATTATTTTTGTGCTTGATAAGAAACTTTTTGGGAAGTC‑TTAACAGAAGCAGG‑Gttttt                                                                      >  2:1148464/1‑140 (MQ=255)
                                                                       aTGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTGTGTCTTTTTCCATTCGTTTTGGTCTTAGTATGAAAGTGTTGATTGAGGC‑TTAAACGAAACAGGGGTTTTTTGGGa                                                                 >  2:2023230/1‑140 (MQ=255)
                                                                       aTGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGC‑TTAACCGAAGCAGGCGTTTTTTCGGa                                                                 <  1:4648/140‑1 (MQ=255)
                                                                       aTGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGC‑TTAACCGAAGCAGGCGTTTTTTCGGa                                                                 <  2:317378/140‑1 (MQ=255)
                                                                        tGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTGGGGGGGGTTTGTTTTTTCATTGTTTTTGTTGTTCATATGAAAGTTTTGTGTCAGGC‑TTAACCGAAACAGGCGttttttggtat                                                                >  1:708888/1‑135 (MQ=255)
                                                                            ttcttcAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGGTGTTTATTTTTGCATTCTTTTTGTTGGTGATATTAAAGTTTTTAGTCAGGC‑TTAAACGAAACCCGCGTTTTTTAGGAttgca                                                            >  1:1980889/1‑137 (MQ=255)
                                                                             tcttcAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCATTCTTTTTCCCTTCTTTTTCTTCGTCATATGAACGTTTTGATTCAGGC‑TTAAACGAAGCAGGCGTTGTTTGGGATTCctc                                                           >  2:681760/1‑140 (MQ=255)
                                                                               ttcAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTGTTTTTGCATTCTTTTTGTTCTTGATATGAACGTTTTGTGTAAGGC‑TTAACCGAAGCACGCGTTTTTTAGGATTCctcgt                                                         >  2:2164738/1‑138 (MQ=255)
                                                                               ttcAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGGTGTTTATTTTTCCATTATATTTGTTATTCATATGAAAGTTTTGTGTCAGGG‑TTAAACCAAGCACGCGTTTTTTAGGATTGATCtt                                                         >  2:2164514/1‑140 (MQ=255)
                                                                                tcAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGC‑TTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTg                                                        <  1:962478/140‑1 (MQ=255)
                                                                                 cAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGC‑TTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGc                                                       <  1:2347089/140‑1 (MQ=255)
                                                                                  aaTGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGC‑TTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCt                                                      <  2:1878790/140‑1 (MQ=255)
                                                                                              aGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGC‑TTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCATTTtct                                          <  2:2587358/140‑1 (MQ=255)
                                                                                               gTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTGTTTTTACATTGTTTTTATTCTTCATGTTAAAGTTTTTAGTCAGTC‑TTAACCGAAGCATGGGTTTTTTTCGAGTCCTATTTCTTATTAATTTtatc                                         >  2:1672563/1‑140 (MQ=255)
                                                                                               gTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGC‑TTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCATTTtctc                                         <  2:806621/140‑1 (MQ=255)
                                                                                                tGGCTTCAATTTCTTCAATCCGTCGGAGTCGGTGGCGTTGTTTCTTTTTGCAGTATTTTTCTTATTACTATTAACGGTTTTGGTCATGC‑TTAACCGACTCAGGCGTTGGTTGGGATTCCTATTGCTGATTGATGTTCTcc                                        >  2:2531516/1‑140 (MQ=255)
                                                                                                tGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGGGTTGTTTCTTTTTGGATTGTTTTTGTTGTTAATATTAACGTTTTTTGTGAGGC‑TTTAACGTAGCAGGGGGTTTTTTGGTTTGCTGTTTGTGTTTAAttttgtgc                                        >  2:352255/1‑136 (MQ=255)
                                                                                                tGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGGGGTGTTTGTTTTTGCCTTGTTTTTGTTGTTGATATTTACGTTTTTATTCAGGC‑TTAACCGAAGCAGGCGTTTTTTGGGCTTCCTCTTGGTGGTTGAttttgtac                                        >  2:210195/1‑136 (MQ=255)
                                                                                                tGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGGGGTCTTTCTTTTTGCATTCTTTTTGTTCTTCATATGAACGTTTTGAGTCAGGC‑TTAAACGAAGCAGGCGTTTTTTGGGATTGCTATTGCTGTTTAATTTtgtca                                        >  2:2618026/1‑139 (MQ=255)
                                                                                                tGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGGGGGGTTTGTTTTTCCCATGTTTTTGTTCTTCATATGAACGTTTTTAGTGAGGG‑TTAACCGAAGCCGGCGTTTTTTCGGTTTGGTCTTGGTGATTGTttttatac                                        >  2:2176274/1‑136 (MQ=255)
                                                                                                tGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTGTTTGTTTTTACAGTGTTTTTGTTCTTCATATGAAAGTTTTGAGTCAGGG‑TTAAACGAAGCTGGGGTTTTTTCGGATTGCTGTTTCTGATTCATTTTGTcc                                        >  2:2229653/1‑140 (MQ=255)
                                                                                                tGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTGTTTATTTTTCCAGTCTTTTTCTTCTTCATATGAACCGTTTGAGTCAGGC‑TTAAACGAAGCAGGCGTTTTTTAGGATTCCTCTTGGTGATTAAttttatac                                        >  2:368096/1‑136 (MQ=255)
                                                                                                tGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCCTTCTTTTTGGTCTTCATATGAACGTTTTTAGTCAGGC‑GTAACCGAAGCCGGCGTTTTTTGGGATTGCTCTTGCGGTGTCATTTTCTcc                                        >  2:34129/1‑140 (MQ=255)
                                                                                                tGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTATTTTTTCATACTTTTTCTTGTTCATATGAACGTTTTTAGTCATGC‑TTAAACGAAGCAGGCGTTTTTTCGGATTCATGGTGGTGATTAATTTTATcc                                        >  2:1974879/1‑140 (MQ=255)
                                                                                                tGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTATTTTTGCATTCATTTTGTTATTCATATTTACGGTTTGAGTCAGGC‑TTAAACCCAGCCGGCGTTTTTTTGGATTACTCGTTCTCATTCAttttatga                                        >  2:443517/1‑136 (MQ=255)
                                                                                                tGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTATTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGG‑TTAACCGAACAAGGCGTTTTTTGGGATTACTCTTTGAGATTAATTTTATcc                                        >  2:1046008/1‑140 (MQ=255)
                                                                                                tGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGGTGTTTGTTTTTGCCTTATTTTTGTTGTTGATATTAAAGTTTTTTGTGAGGC‑GTTAACGAAGCAGGCGTTTTTTGGGAGTGCTCTTGGGGTTTGATTTTATcc                                        >  1:2126049/1‑140 (MQ=255)
                                                                                                tGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGGTCTTTCTTTTTACCTTCTTTTTAGTCTTCAAAAGGACCTTTTGAGGAACGC‑ATAACCGCACCAGGCGTTTTTTCCGATTCCTCGTGCTGTTTGATTTTCTcc                                        >  2:643413/1‑140 (MQ=255)
                                                                                                tGGCTTCAATTTCTTCAATCCGACGGAGTCGTGGGCGGTGTTTCTTTTTGCCATCTTTTTCTTGTTCATATGAACGTTTTTAGTCAGGC‑TTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCATTTTCTcc                                        >  2:1310781/1‑140 (MQ=255)
                                                                                                tGGCTTCAATTTCTTCAATCCGACGGAGTCGGTGGCGGTCTTTCTTTTTCCATTCTTTTTCTTCTTGATATGAACGTTTTTATTCAGGC‑GTTACCGAAGCAGGCGTTTTTTAGGATTCCTCTTGGTTATTCAttttatgc                                        >  2:1727150/1‑136 (MQ=255)
                                                                                                        aTTTCTTCAATCCGACGGAGTCGTTGGGGTTGTTTGTTTTTGCATTGTTTTTCTTCTTGAAATGAACGTTTTTTGTCAGGC‑TTTAACGAAGCCGGCGTTTTTTGTGTTTGCGCTTTGTGTTTGTTTTTGTCCAATTAAAg                                >  2:1259476/1‑140 (MQ=255)
                                                                                                        aTTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGC‑TTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCATTTTCTCCAATTCAAg                                <  2:538686/140‑1 (MQ=255)
                                                                                                           tcttcAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGC‑TTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCATTTTCTCCAATTCAAgctg                             <  1:167944/140‑1 (MQ=255)
                                                                                                           tccacAACCCGACGCCGTCGGTGGCGGACTGTCTTTTGCCCTGCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGC‑TTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCATTTTCTCCAATTCAAgctg                             <  1:2392500/136‑1 (MQ=255)
                                                                                                             ttcAATCCGACGGAGTCGTTGGCGTTCTTTGTTTTTCCATTCTTTTTATTCTTCATATTAACGTTTTTGGTCAGGC‑TTAAACGAAGCAGGCGTTGTTTGGGATTCGTCTTGCTGATTCATTTTCTCCAATTCAAgctgct                           >  2:1581565/1‑140 (MQ=255)
                                                                                                             ttcAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGC‑TTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCATTTTCTCCAATTCAAgctgct                           <  1:258424/140‑1 (MQ=255)
                                                                                                             ttcAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGC‑TTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCATTTTCTCCAATTCAAgctgct                           <  1:1277970/140‑1 (MQ=255)
                                                                                                             ttcAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGC‑TTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCATTTTCTCCAATTCAAgctgct                           <  2:152034/140‑1 (MQ=255)
                                                                                                             ttcAATCCGACGGAGTCGTTGGCGTTCTTTCATTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGC‑TTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCATTTTCTCCAATTCAAgctgct                           <  2:1985525/140‑1 (MQ=255)
                                                                                                                       cGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGC‑TTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCATTTTCTCCAATTCAAGCTGCTCTGttttttt                 <  2:2480549/140‑1 (MQ=255)
                                                                                                                       cGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGC‑TTAACCGAAGCAGGCGTTTTTTCGGATTCCGCTTGCTGATTCATTTTCTCCAATTCAAGCTGCTCTGttttttt                 <  1:1727667/140‑1 (MQ=255)
                                                                                                                       cGGAGTCGTGGGCGTTCTTTCTTGTTCCATTCTTTTTCGTCTTCATATGCACGTTTTGACTCAGGC‑TTAACCGAAGCAGGCGTTTTTGCGGATGCCTCTTGCTGATTCATTTTCTACAATTCAAGCTGCTCTGtttttgt                 <  1:1885371/140‑3 (MQ=255)
                                                                                                                         gAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGC‑TTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCATTTTCTCCAATTCAAGCTGCTCTGTTTTTTtct               <  1:2092006/140‑1 (MQ=255)
                                                                                                                         gAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGC‑TTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCATTTTCTCCAATTCAAGCTGCTCTGTTTTTTtct               <  1:210195/140‑1 (MQ=255)
                                                                                                                         gAGTCGTTGGCGTTCTTTCTTTTTACATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGC‑TTAACCGAAGCAGGAGTTTTTTAGTATTCCTCTTGCTGATTAATTTTCTCCAATTCAAGATGATCTtttttttttt               <  1:1273477/140‑3 (MQ=255)
                                                                                                                          aGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGC‑TTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCATTTTCTCCAATTCAAGCTGCTCTGTTTTTTtctc              <  2:520004/140‑1 (MQ=255)
                                                                                                                                tGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGC‑TTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCATTTTCTCCAATTCAAGCTGCTCTGTTTTTTTCTCCGtata        <  2:2655306/140‑1 (MQ=255)
                                                                                                                                tGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGC‑TTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCATTTTCTCCAATTCAAGCTGCTCTGTTTTTTTCTCCGtata        <  2:2521414/140‑1 (MQ=255)
                                                                                                                                 ggCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGC‑TTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCATTTTCTCCAATTCAAGCTGCTCTGTTTTTTTCTCCGTataa       <  1:1674159/140‑1 (MQ=255)
                                                                                                                                 ggCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGC‑TTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCATTTTCTCCAATTCAAGCTGCTCTGTTTTTTTCTCCGTataa       <  1:1222865/140‑1 (MQ=255)
                                                                                                                                     ttctttctTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGC‑TTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCATTTTCTCCAATTCAAGCTGCTCTGTTTTTTTCTCCGTATaataat   <  1:2241661/140‑1 (MQ=255)
                                                                                                                                     ttctttctTTGTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGC‑TTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCATTTTCTCCAATTCAAGCTGCTCTGTTTTTTTCTCCGTATaataat   <  1:1817394/140‑1 (MQ=255)
                                                                                                                                      tctttcttTTTCCATTCTTTTTCTTCTTCATATTAAAGTTTTTAGTCAGGC‑TTAACCGAAGCAGGCGTTTTTTGGGATTACTAATTCTGATTAATTTTATCCAAATAAATCTGCTCAGTTTTTTTATACCTATAATAATc  >  1:610881/1‑140 (MQ=255)
                                                                                                                                      gctttctttTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGC‑TTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCATTTTCTCCAATTCAAGCTGCTCTGTTTTTTTCTCCGTATAATAATc  >  2:2074620/2‑140 (MQ=255)
                                                                                                                                       |                                                                                                                                           
CATGGATGGCTTGTACCTTTTCATGGTCTTGATAGATTTCCGGATCACATAGCAATTCATCGTTATGACTAATGTTTTCTTCAATGGTTTGAACAGTGGCTTCAATTTCTTCAATCCGACGGAGTCGTTGGCGTTCTTTCTTTTTCCATTCTTTTTCTTCTTCATATGAACGTTTTGAGTCAGGC‑TTAACCGAAGCAGGCGTTTTTTCGGATTCCTCTTGCTGATTCATTTTCTCCAATTCAAGCTGCTCTGTTTTTTTCTCCGTATAATAATC  >  NZ_CP034943/633919‑634192

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑