| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 514,968 | 0 | G | T | 25.6% | 182.1 / 21.8 | 90 | V128L (GTA→TTA) | EO946_RS02645 | outer membrane lipoprotein carrier protein LolA |
| Reads supporting (aligned to +/- strand): ref base G (51/16); new base T (1/22); total (52/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.44e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CCGAAAAAGGACCAAAATCAAGTCATTTTACGAAATGAAAACGGAGTATTTGTTCTCACGCCGTCTTTAAATAAGAGCTTCAGGTTTCAAA‑GCGACTGGCCGAACAACAGCAGCCAGGTCTACTTGTTTGAATCGCTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCAGCATAACAAAATGCTGCCAACGCAAGAAATCACGTTTAACAAAAAAGATATGAG > NZ_CP034943/514830‑515104 | ccGAAAAAGGACCAAAATCAAGTCATTTTACGAAATGAAAACGGAGTATTTGTTCTCACGCCGTCTTTAAATAAGAGCTTCAGGTTTCAAA‑GCGACTGGCCGAACAACAGCAGCCAGGTCTACTTGTTTGAATCGCTCGt < 1:1340061/140‑1 (MQ=255)ccGAAAAAGGACCAAAATCAAGTCATTTTACGAAATGAAAACGGAGTATTTGTTCTCACGCCGTCTTTAAATAAGAGCTTCAGGTTTCAAA‑GCGACTGGCCGAACAACAGCAGCCAGGTCTACTTGTTTGAATCGCTCGt < 1:1666459/140‑1 (MQ=255) aaaGGACCAAAATCAAGTCATTTTACGAAATGAAAACGGAGTATTTGTTCTCACGCCGTCTTTAAATAAGAGCTTCAGGTTTCAAA‑GCGACTGGCCGAACAACAGCAGCCAGGTCTACTTGTTTGAATCGCTCGTAAAgg < 1:1057960/140‑1 (MQ=255) aaaGGACCAAAATCAAGTCATTTTACGAAATGAAAACGGAGTATTTGTTCTCACGCCGTCTTTAAATAAGAGCTTCAGGTTTCAAA‑GCGACTGGCCGAACAACAGCAGCCAGGTCTACTTGTTTGAATCGCTCGTAAAgg < 1:76883/140‑1 (MQ=255) aaaGGACCAAAATCAAGTCATTTTACGAAATGAAAACGGAGTATTTGTTCTCACGCCGTCTTTAAATAAGAGCTTCAGGTTTCAAA‑GCGACTGGCCGAACAACAGCAGCCAGGTCTACTTGTTTGAATCGCTCGTAAAgg < 1:1786338/140‑1 (MQ=255) cacAAGTAATTTTACTAAATCAAAACGTCTTATTTGTTATCACGCCGTCTTTAAATAACTGATTCAGTTTTAAAC‑GCTACTGGCCGAACAACAGCAGCCTGGACTACTTTTTTTAATCGCTCTTAACGGTTGTAAAAAAc < 2:1340390/138‑1 (MQ=255) aaGTCATTTTACGAAATGAAAACGGAGTATTTGTTCTCACGCCGTCTTTAAATAAGAGCTTCAGGTTTCAAA‑GCGACTGGCCGAACAACAGCAGCCAGGTCTACTTGTTTGAATCGCTCGTAAAGGATGTTCAAAACGAc > 1:711877/1‑140 (MQ=255) aGTCATTTTACGAAATGAAAACGGAGTATTTGTTCTCACGCCGTCTTTAAATAAGAGCTTCAGGTTTCAAA‑GCGACTGGCCGAACAACAGCAGCCAGGTCTACTTGTTTGAATCGCTCGTAAAGGATGTTCAAAACGACt > 2:310238/1‑140 (MQ=255) ttttACGAAATGAAACGGGCTTTTTTGTTCTCACGCGGTCTTTAAATAAGTGGTTCTGGTTTAAAC‑GCGAGGGGCCCAACAACAGCAGCCAGGTCTAGTTGTTTGAATCGCTCGTAACGGATGTTAAAAACGACTCGGAt < 2:700800/140‑1 (MQ=255) tttACGAAATGAAAACGGAGTATTTGTTCTCACGCCGTCTTTAAATAAGAGCTTCAGGTTTCAAA‑GCGACTGGCCGAACAACAGCAGCCAGGTCTACTTGTTTGAATCGCTCGTAAAGGATGTTCAAAACGACTCGGATg > 1:342480/1‑140 (MQ=255) tttACGAAATGAAAACGGAGTATTTGTTCTCACGCCGTCTTTAAATAAGAGCTTCAGGTTTCAAA‑GCGACTGGCCGAACAACAGCAGCCAGGTCTACTTGTTTGAATCGCTCGTAAAGGATGTTCAAAACGACTCGGATg > 2:632729/1‑140 (MQ=255) tttACGAAATGAAAACGGAGTATTTGTTCTCACGCCGTCTTTAAATAAGAGCTTCAGGTTTCAAA‑GCGACTGGCCGAACAACAGCAGCCAGGTCTACTTGTTTGAATCGCTCGTAAAGGATGTTCAAAACGACTCGGATg > 2:1891513/1‑140 (MQ=255) aaaCGGTTTTTTGGTTCTCACGCCTTTTTTAAATAAGAGCTTCTGTTTACAAC‑GCGACGGGCCCAACACCCGCCGCCCGGTCTAGTTTTTTTAATCGCTCTTAAAGTATGTAAAACACGACTCGGATGCAGTTTTCACTg < 1:1859465/140‑1 (MQ=255) cgtattATTTGTTCTCACGCCTTATTTAAATAAGAGCTTCAGGTTTCAAC‑GCGACGGGCCGAACAACAGCAGCCAGGTCTAGTTTTTTGAATCGCTCTTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCa < 2:1104025/135‑1 (MQ=255) tttttttGTTCTCTCGCTTTTTTTAAATATGTGCTTCTGTTTTAAAA‑GCGAGTGGCCCAAAAACAGAAGCCTTGTTTATTTTTTTGAATCGCTCTAAAAGTTTGTAAAACACGACTCGGATGCAGTTTTCACTGCCaaag < 1:1737482/136‑1 (MQ=255) tttttGTTATCACGCCGTATTTAAATAAGAGCTTCAGTTTTCAAA‑GCGACTGGCCGAACAACAGCAGCCAGGTATACTTGTTTGAATCGCTCTTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCaaagaa < 2:2066253/138‑1 (MQ=255) tATTTGTTCTCACGCCGTATTTAAATAAGAGCGACAGGTATCAAC‑GCGACTGGCCGAACAACAGCAGCCAGGTCTACTTTTTTTAATCGCTCGTAAAGGATGTTCAACACGACTCGGATGCAGTTTTCACTGCCaaagaa < 2:1312620/140‑1 (MQ=255) tgctctcACGCCTTATTTAAAACAGAGCTTC‑TGTTTCAAACGCGACGGCCCCAACAACAGCAGCCAGGTATACTTTTTTTAAGCGCTCTTAAAGGAGTTTCAAAACGACTCGGATGCAGTTTTCACTGCCaaagaaaaga < 1:1182053/137‑1 (MQ=255) ttCTCACGCCGTCTTTAAATAAGAGCTTCAGGTTTCAAA‑GCGACTGGCCGAACAACAGCAGCCAGGTCTACTTGTTTGAATCGCTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAagaaaagaaa > 1:2032530/1‑140 (MQ=255) ctcACGCCGTCTTTAAATAAGAGCTTCAGGTTTCAAA‑GCGACTGGCCGAACAACAGCAGCCAGGTCTACTTGTTTGAATCGCTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGACAAGAAATa > 2:308130/1‑140 (MQ=255) ctcACGCCGTCTTTAAATAAGAGCTTCAGGTTTCAAA‑GCGACTGGCCGAACAACAGCAGCCAGGTCTACTTGTTTGAATCGCTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATa > 1:234147/1‑140 (MQ=255) ctcACGCCGTCTTTAAATAAGAGCTTCAGGTTTCAAA‑GCGACTGGCCGAACAACAGCAGCCAGGTCTACTTGTTTGAATCGCTCGGAATGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATa > 1:175601/1‑140 (MQ=255) ccACGCGGTTTTTAAATAAGAGTTTCTGGTTACAAC‑GCGACGGCCCCAAAAACAGCACCCAGTTTTACTTTTTTTAATCGCTCGTAAAGGTTTTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATAc < 1:43942/139‑1 (MQ=255) cACGCCGTCTTTAAATAAGAGCTTCAGGTTTCAAA‑GCGACTGGCCGAACAACAGCAGCCAGGTCTACTTGTTTGAATCGCTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAACAGAAATACg > 2:2001467/1‑140 (MQ=255) cACGCCGTCTTTAAATAAGAGCTTCAGGTTTCAAA‑GCGACTGGCCGAACAACAGCAGCCAGGTCTACTTGTTTGAATCGCTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACg > 1:770142/1‑140 (MQ=255) cACGCCGTCTTTAAATAAGAGCTTCAGGTTTCAAA‑GCGACTGGCCGAACAACAGCAGCCAGGTCTACTTGTTTGAATCGCTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACg > 2:722469/1‑140 (MQ=255) cACGCCGTCTTTAAATAAGAGCTTCAGGTTTCAAA‑GCGACTGGCCGAACAACAGCAGCCAGGTCTACTTGTTTGAATCGCTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCAATGCCAAAGAAAAGAAATACg > 1:451786/1‑140 (MQ=255) cACGCCGTCTTTAAATAAGAGCTTCAGGTTTCAAA‑GCGACTGGCCGAACAACAGCAGCCAGGTCTACTTGTTTGAATCGCTCGGAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACg > 1:1206265/1‑140 (MQ=255) tAATAGCTTCAGTTTTAAAA‑GCGACTGGCCGAACAACAGAAGCCTGGTCTAATTTTTTGAATCGCTCGTAAAGGATTTTAAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTaaaa < 2:644060/140‑1 (MQ=255) tAAGACCTTATGGTTTAAAA‑GCGACTGGCCGAAAAACAGCAGCATGGTCTACTTGTTTTAATCGCTCTTAAAGTATTTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTaaaa < 2:643502/140‑1 (MQ=255) agagCTTCAGGTTTCAAA‑GCGACTGGCCGAACAACAGCAGCCAGGTCTACTTGTTTGAATCGCTCTTAAAGGATGTTCAACACGACTCGGATGCAGTTTTCACTGCCAAAGACAAGAAATACGTATTCGAAACTAAAACg > 2:526820/1‑140 (MQ=255) agagCTTCAGGTTTCAAA‑GCGACTGGCCGAACAACAGCAGCCAGGTCTACTTGTTTGAATCGCTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACg > 2:1415441/1‑140 (MQ=255) agagCTTCAGGTTTCAAA‑GCGACTGGCCGAACAACAGCAGCCAGGTCTACTTGTTTGAATCGCTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACg > 2:753476/1‑140 (MQ=255) agagCTTCAGGTTTCAAA‑GCGACTGGCCGAACAACAGCAGCCAGGTCTACTTGTTTGAATCGCTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACg > 2:216767/1‑140 (MQ=255) agagCTTCAGGTTTCAAA‑GCGACTGGCCGAACAACAGCAGCCAGGTCTACTTGTTTGAATCGCTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACg > 2:542225/1‑140 (MQ=255) agagCTTCAGGTTTCAAA‑GCGACTGGCCGAACAACAGCAGCCAGGTCTACTTGTTTGAATCGCTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACg > 2:567645/1‑140 (MQ=255) agagCTTCAGGTTTCAAA‑GCGACTGGCCGAACAACAGCAGCCAGGTCTACTTGTTTGAATCGCTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACg > 1:1606986/1‑140 (MQ=255) agagCTTCAGGTTTCAAA‑GCGACTGGCCGAACAACAGCAGCCAGGTCTACTTGTTTGAATCGCTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACg > 2:753006/1‑140 (MQ=255) gagCTTCAGGTTTCAAA‑GCGACTGGCCGAACAACAGCAGCCAGGTCTACTTGTTTGAATCGCTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGa > 1:561238/1‑140 (MQ=255) gagCTTCAGGTTTCAAA‑GCGACTGGCCGAACAACAGCAGCCAGGTCTACTTGTTTGAATCGCTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGa > 1:984831/1‑140 (MQ=255) gagCTTCAGGTTTCAAA‑GCGACTGGCCGAACAACAGCAGCCAGGTCTACTTGTTTGAATCGCTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGa > 1:984863/1‑140 (MQ=255) agCTTCAGGTTTCAAA‑GCGACTGGCCGAACAACAGCAGCCAGGTCTACTTGTTTGAATCGCTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGaa > 1:188979/1‑140 (MQ=255) agCTTCAGGTTTCAAA‑GCGACTGGCCGAACAACAGAAGCCAGGTCTACTTGTTTGAATCGCTCGTAAAGGAGGTTCCAAACGACTCGGATGCGGTTTTCACTGCCAACGAAAAGAAATACGTATTCGACACTAAAACGaa > 1:302704/1‑140 (MQ=255) agCTTCAGGTTTCAAA‑CCGACTGGCCGAACAACAGCAGCCAGGTCTACTTGTTTGAATCGCTCGTAAAGGATGTTCAAAACGAGTCGGATGCAGTTTTCACTGACAAAGAAAAGAAATACGTCTTCGAAACTCAAACGac > 1:1188434/1‑139 (MQ=255) tcttttttCAAA‑GCGACTGGCCTAACAACAGCAGCCATGTCTATTTTTTTTAATCGATCTTAATGTATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTAt < 2:1607922/135‑1 (MQ=255) tctgttttAAAA‑GCGACTGGCCTAACAACAGCAGCCTGTTATAGTTTTTTTAATGGATCTTAAAGTATTTTAAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTAt < 1:1239044/135‑1 (MQ=255) tctggTTTCAAC‑GCGAGTGGCCGAACAACAGCAGCCAGTTATAGTTGTTTGAATCGATATTAAAGTATTTTAAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTAt < 1:1038837/137‑1 (MQ=255) tctggTTACAAA‑GCGACTGGCCTAACAACAGCTGCCAGGTATACTTTTTTGAATCGATCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTAt < 2:2064866/137‑1 (MQ=255) taaGGTTTCAAA‑GCGACTGGCCGAACAACAGCAGCCAGGTCTACTTGTTTGAATCGCTCGTAAAGGATGTTAAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTAt < 2:622635/138‑1 (MQ=255) tCAGGTTTCAAA‑GCCACTGGCCGAACAACAGAAGCCAGGTCTATTTTTTTGAATCGCTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTAt < 2:2015658/140‑1 (MQ=255) ggTTTCAAC‑GCGACTGGCCTAACAACCGCAGCCTGTTATACTTTTTTGAATCGCTCTTAACGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCAg < 1:481104/140‑1 (MQ=255) ttttCACA‑GGGAGGGGCCGAAAAACCGCCGCCTGTTCTATTTTTTTGAATGGCTTTTAAAGTTTTTTAAACACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCAGc < 1:310238/139‑1 (MQ=255) tttCAAC‑GCGAGGGGCCTAACAACAGCCGCCTGTTCTATTTTTTTGAATCGCTCTTAACGGTTTTTAAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCAGCa < 1:589546/140‑1 (MQ=255) tttCAAA‑GGGACTGGCCTACAATCAGAAGCAATGTCTACTTTTTTGATTCGTTCTTAATGTTTTTTAAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCAGCa < 2:111967/140‑1 (MQ=255) tttCAAA‑GGGACTGGCCCAACAACAGCAGCCTGTTCTTCTTTTTTTAATCGCTCTTAATGTATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCAGCa < 1:1331372/140‑1 (MQ=255) aaaacgCGACTGCCCTAAAAACAGCACCCTGTTATACTTTTTTTAATCGCTCGTAAAGCATGTAAAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCAGCATa < 1:1789573/135‑1 (MQ=255) cTGGCCGAACAACAGCAGCCAGGTCTACTTGTTTGAATCGCTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCAGCATAACAAAAtgc > 2:625425/1‑140 (MQ=255) cTGGCCGAACAACAGCAGCCAGGTCTACTTGTTTGAATCGCTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCAGCATAACAAAAtgc > 2:1672752/1‑140 (MQ=255) caacaaaAGCACCCTGGTCTACTTGTTTGAATCGCTCGTAAAGGATTTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAACCGAACTATCAGCATAACAAAATGCTGCCaa < 1:1205492/139‑1 (MQ=255) aaacaGCAGCCAGTTATTCTTTTTTTAATCGCTCTTAAAGTTTGTTAAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCAGCATAACAAAATGCTGCCAACGc < 1:860360/139‑1 (MQ=255) agcagcCAGGTCTACTTGTTTGAATCGCTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCAGCATAACAAAATGCTGCCAACGCAAGa > 2:244280/1‑140 (MQ=255) gcagcCAGGTCTACTTGTTTGAATCGCTCGTAAAGGATGTTCAAAAAGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTACAACGAACTATCAGCATAACAAAATGCTGACAAAGCAAGaa > 2:149132/1‑140 (MQ=255) ctaGGTCTACTTGTTTGAATCGCTCGGAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCAGCATAACAAAATGCTGCCAACCCAAGAAATCa > 2:401403/3‑140 (MQ=255) gTCTACTTGTTTGAATCGCTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTTCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCAGCATAACAAAATGCTGCCAACGCAAGAAATCACGtt > 1:438351/1‑140 (MQ=255) gTCTACTTGTTTGAATCGCTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCAGCATAACAAAATGCTGCCAACGCACGAAATCACGtt > 2:78792/1‑140 (MQ=255) cTTGTTTGAATCGCTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCAGCATAACAAAATGCTGCCAACGCAAGAAATCACGTTTAACa > 2:1023227/1‑140 (MQ=255) cTTGTTTGAATCGCTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCACCATAACCAAATGCTGCCAACGCAAGACATCACGTTTAAcc > 2:1116175/1‑139 (MQ=255) ttGTTTGAATCGCTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCAGCATAACAAAATGCTGCCAACGCAAGAAATCACGTTTAACaa > 1:427492/1‑140 (MQ=255) ttttttAATCGCTGTTAAAGGATGTAAAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCAGCATAACAAAATGCTGCCAACGCAAGAAATCACGTTTAACaaa < 2:1893133/138‑1 (MQ=255) tttttAATCGCTCTTAACGTATTTTAAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCAGCATAACAAAATGCTGCCAACGCAAGAAATCACGTTTAACaaaa < 2:188979/139‑1 (MQ=255) tttttAATCGCTCTTAAAGTATGTTAAACACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCAGCATAACAAAATGCTGCCAACGCAAGAAATCACGTTTAACaaaa < 1:1177307/139‑1 (MQ=255) tttttAATCGATCTTAAAGGATTTACAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCAGCATACCAAAATGCTGCCAACGCAAGAAATCACGTTTAACaaaa < 1:454514/139‑1 (MQ=255) ttttGAATCGCTCGTAACGGATTTACAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCAGCATAACAAAATGCTGCCAACGCAAGAAATCACGTTTAACaaaa < 2:1413343/139‑1 (MQ=255) ttttGAATCGCTCGTAAAGGTTTTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCAGCATAACAAAATGCTGCCAACGCAAGAAATCACGTTTAACaaaa < 2:366323/139‑1 (MQ=255) ttttAATCGCTCTTAAAGGATTTTAAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCAGCATAACAAAATGCTGCCAACGCAAGAAATCACGTTTAACaaaaa < 1:892613/140‑1 (MQ=255) ttttAATCGATCTAAAAGCATTTTAAACACGACTCGGATTCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCAGCATAACAAAATGCTGCCAACGCAAGAAATCACGTTTAACaaaaa < 1:1514210/140‑1 (MQ=255) tGAATCGCTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCAGCATAACAAAATGCTGCCAACGCAAGTAATCACGTTTAACAAAAAAg > 1:541277/1‑140 (MQ=255) tGAATCGCTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCAGCATAACAAAATGCTGCCAACGCAAGAAATCACGTTTAACAAAAAAg > 1:1012659/1‑140 (MQ=255) tGAATCGCTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCAGCATAACAAAATGCTGCCAACGCAAGAAATCACGTTTAACAAAAAAg > 2:1401896/1‑140 (MQ=255) tGAATCGCTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCAGCATAACAAAATGCTGCCAACGCAAGAAATCACGTTTAACAAAAAAg > 1:997009/1‑140 (MQ=255) tGAATCGCTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCAGCATAACAAAATGCTGCCAACGCAAGAAATCACGTTTAACAAAAAAg > 1:1893133/1‑140 (MQ=255) cTCGTAAAGGATGTTCAAAACGAGTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCAGCCTAACAAAATGCTGCCAACGCAAGAAATCACGTTTAACAAAAAAGatatcac > 2:1688351/1‑137 (MQ=255) cTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCCAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCAGCATAACAAAATGCTGCCAACGCAAGAAATCACGTTTAACAAAAAAGATATGAg > 2:59356/1‑140 (MQ=255) cTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGACATACGTATTCGAAACTAAAACGAACTATCAGCATAACAAAATGCTGCCAACGCAAGAAATCACGTTTAACAAAAAAGATATGAg > 2:1937473/1‑140 (MQ=255) cTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCAGCATAACAAAATGCTGCCAACGCAAGAAATCACGTTTAACAAAAAAGATATgcg > 1:478159/1‑138 (MQ=255) cTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCAGCATAACAAAATGCTGCCAACGCAAGAAATCACGTTTAACAAAAAAGATATGAg > 2:1424245/1‑140 (MQ=255) cTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCAGCATAACAAAATGCTGCCAACGCAAGAAATCACGTTTAACAAAAAAGATATGAg > 2:349135/1‑140 (MQ=255) cTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCAGCATAACAAAATGCTGCCAACGCAAGAAATCACGTTTAACAAAAAAGATATGAg > 2:1118737/1‑140 (MQ=255) cTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCAGCATAACAAAATGCTGCCAACGCAAGAAATCACGTTTAAAAAAAAAGATATGAg > 2:1470500/1‑140 (MQ=255) cTCGTAAAGGATGTTCAAAACGACTCGGAAGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCAGCATAACAAAATGCTGCCAACGCAAGAAAACACGTTTAACAAAAAAGATATGAg > 2:1470395/1‑140 (MQ=255) | CCGAAAAAGGACCAAAATCAAGTCATTTTACGAAATGAAAACGGAGTATTTGTTCTCACGCCGTCTTTAAATAAGAGCTTCAGGTTTCAAA‑GCGACTGGCCGAACAACAGCAGCCAGGTCTACTTGTTTGAATCGCTCGTAAAGGATGTTCAAAACGACTCGGATGCAGTTTTCACTGCCAAAGAAAAGAAATACGTATTCGAAACTAAAACGAACTATCAGCATAACAAAATGCTGCCAACGCAAGAAATCACGTTTAACAAAAAAGATATGAG > NZ_CP034943/514830‑515104 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |