| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 2,991,227 | 0 | T | G | 35.9% | 77.3 / 32.1 | 78 | intergenic (+28/‑179) | gbsR/bslA | transcriptional regulator GbsR/biofilm‑surface layer protein BslA |
| Reads supporting (aligned to +/- strand): ref base T (15/35); new base G (28/0); total (43/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.77e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ATACGAGCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGTAATT‑ACT‑A‑CAAA‑TTTGAAAAAT‑ACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGG > NZ_CP034943/2991091‑2991363 | ataCGAGCCACTGGAAAGCTCTAAAGCGTACTATGATTGGGTGACACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAATGTAATACAAAAACGCCTGGGAAACCGGGCGtgttt > 2:349433/1‑140 (MQ=255)ataCGAGCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAACCCGGGCGtgttt > 2:221993/1‑140 (MQ=255)ataCGAGCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCgttgtt > 1:1078747/1‑140 (MQ=255)ataCGAGCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGtgttt > 1:233774/1‑140 (MQ=255)ataCGAGCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGtgttt > 1:1076297/1‑140 (MQ=255)ataCGAGCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGtgttt > 1:1593106/1‑140 (MQ=255) cGAGCAACTGGAAAGCTCTATAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTg > 2:1041476/1‑140 (MQ=255) cGAGCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACGGATTGAAACAAAGTCAAACAAAAACGCCTGGGAAACCGTGCGttgtttgg > 2:2027942/1‑138 (MQ=255) cGAGCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTGTTTg > 1:1120924/1‑140 (MQ=255) accAACTGCAAACCTCTAACGCTAACTAGGATGGGCTCAAACGGCTTGCTGAAGCGGCGCCCAGCGGGGAAATTTTTAAATTTAAACCTATTGAAAAAAAGTAAAAAAAACACGCCTGGGAAACCGGGCGTTTTTTTGtt < 1:854909/138‑1 (MQ=255) aGCACCTGGAAAGCTCTAAAGCTTACTATGATGGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTGtt > 2:542120/1‑140 (MQ=255) aGCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTTAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAAAGCATGGGAAACCGGGCGTGTTTTTGtt > 1:854780/1‑140 (MQ=255) aGCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGtt > 1:1252353/1‑140 (MQ=255) aGCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGtt > 2:542140/1‑140 (MQ=255) aGCAACTGGAAAGCTCTAAAGCTTACTATGAGTGGCTGAAACGGATTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATGTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTGtt > 2:751561/1‑140 (MQ=255) gCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTACAACACAAACGCCGGGGCAACCGGGCGTGTTTTTGttt > 2:1229905/1‑139 (MQ=255) gCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGACACCGGGCGTGTTTTTGttg > 2:1230469/1‑139 (MQ=255) gCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGttttttttttg > 2:953129/1‑139 (MQ=255) cAACTGGAAAGCTCTAAAGCTTAATATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGCGCGGGGAAATTTTTAAATTAATACCTATTGAAACAAAGTAACAAAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTT‑Ct < 1:2036633/140‑1 (MQ=255) aaCTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTGTTTGTT‑Ctt > 2:1730686/1‑140 (MQ=255) aCTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCGTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTGTT‑Attt > 2:182435/1‑140 (MQ=255) cTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTGTT‑Gtttt > 2:1525765/1‑140 (MQ=255) cTGCAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGACTCGGTGCCGCGCGGGTAATTTTTTAAATTTATACCGATTGAAACAAAGAAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTT‑Ctttt < 1:221993/140‑1 (MQ=255) ctctAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTGTT‑GGTTTTTTTTTaa > 1:1162549/1‑140 (MQ=255) ctAAAGCTTACTATGATTGGCTGAAAAGGCTTGCTGAATCGGTGCATAGCGGGGAAATTTTTAAATTTATACCGATTGAAACACAGTAAAACAAAAACGCCTGGGACACCGGGCGTTTTTTTTGT‑GTTTTTGATGTacat > 1:61596/1‑137 (MQ=255) tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTT‑AGTTTTTATGTAATT‑AAA‑A‑Caaa > 2:1258925/1‑140 (MQ=255) tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGGTTTTTTT‑CTTTTTTATTTTATt‑aat‑aagaa > 1:718298/1‑136 (MQ=255) aCTATGATTGGCTGAACCGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGTAATt‑act‑aaacaa > 1:925963/1‑135 (MQ=255) aCTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTTTT‑TTTTTTTTTTTAATT‑AAT‑A‑aaaaa > 1:792993/1‑139 (MQ=255) aCTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTGTT‑GTTTTTTTTTTTATT‑AAT‑A‑CAAA‑t > 1:793088/1‑140 (MQ=255) aTGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAACACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGTAATT‑ACT‑A‑CAAA‑TTTg < 1:1444966/140‑1 (MQ=255) aTTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTT‑ATTTTTTATGTAATT‑AAT‑A‑AAAA‑TTTTaaa > 2:2032815/1‑140 (MQ=255) ttGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTT‑GTTTTTTATTTAAAT‑ACT‑A‑CAAA‑TTTGaaaa > 2:1444966/1‑140 (MQ=255) gCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTGTT‑GTTTTTTATTTTATT‑ACT‑A‑CAAATTTTGaaaaaa > 2:146222/1‑139 (MQ=255) aCGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTTTT‑TTTTTTTTTTTAATT‑TAT‑A‑AAAA‑TTTTTAAAAT‑AAGGGaa > 1:672455/1‑140 (MQ=255) aTCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAACACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGTAATT‑ACT‑A‑CAAA‑TTTGAAAAAT‑ACGGGAAAAACAT‑CCCAtt < 1:953083/140‑1 (MQ=255) tCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTTTT‑CTTTTTTATTTAATT‑AAT‑A‑AAAA‑TTTTAAAAAT‑AAGGGAAAAAAAT‑ACCAttt > 2:651579/1‑140 (MQ=255) gCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTTGT‑GTTTTTTATTTTATT‑ACT‑A‑CAAA‑ATTGTAAAATAACGGTAAAAACAA‑CCCAttacttg > 1:326265/1‑135 (MQ=255) gagCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTGTT‑GTTTTTTATGTAATT‑ACT‑A‑CAAA‑TTTTAAAAAA‑ACGGGGACAAGAT‑CACATTTACTTACaa > 2:1828420/1‑140 (MQ=255) cGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTGGTT‑GTTTTTTTTGTAATT‑ACG‑A‑CAAA‑TTTTAAAAAT‑AACGGACAAACAT‑CCCAATTACTTCCAAAat > 2:388384/1‑140 (MQ=255) cGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTGTT‑GTTTTTTTTGTAATT‑AAT‑A‑AAAA‑ATTTAAAAAT‑AAGGGAAAAAAATACCCATTTA‑TTGCaaaag > 2:832878/1‑139 (MQ=255) gggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTT‑GTTTTTTATTTAATT‑TCT‑A‑CAAA‑TTTGAAAAAT‑AAGGGTAATACAT‑AGCCTTTTCTTACAAAatat > 2:1464673/1‑140 (MQ=255) ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTT‑GTTTTTTTTGTAATT‑ACT‑A‑AAAA‑TTTTAAAAAT‑AAGGGAAAAAAAT‑ACCATTTAAGTACAAAATAtt > 2:926808/1‑140 (MQ=255) ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTGTTGTT‑CTTTTTTATGTAATT‑TAT‑A‑CAAA‑TTTTAAAAAT‑AAGGGTAAAACAT‑CCCCTTTACTTGCAAAAGAtt > 2:1516590/1‑140 (MQ=255) ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTGTTTTTTT‑GTTTTTTATTTAATT‑AAT‑A‑AAAA‑TTTGAAAAAT‑TAGGGAAAAAAAA‑GCCATTTACTTCCAAAATAtt > 2:380499/1‑140 (MQ=255) ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTGTTTTGTT‑GTTTTTTTTTTAATT‑AAT‑A‑AAAA‑TTTGAAAAAT‑ACCGGGAAAAAAT‑ACCATTTTCTTCCAAAATAtt > 2:1557705/1‑140 (MQ=255) ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTTTT‑GTTTTTTTTGTAATTAAGA‑A‑AAAA‑TTTTAAAAAA‑AC‑GGAAAAAAAA‑ACCATATAATTGCAAAATAtt > 1:451638/1‑140 (MQ=255) ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTGTTGGTTTTTTTTGTAA‑T‑ACT‑A‑AAAA‑ATTGTAAAAT‑AAGGGAAAAAAAA‑ACCATTTAATTCGCAAATAtt > 1:1959390/1‑140 (MQ=255) ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTGTT‑GTTTTTTTTGTAATT‑TAT‑A‑CAAA‑ATTTTAAAAT‑AAGGGAAAAACAT‑ACCCTTTAGTTCCAAAAGAtt > 2:964039/1‑140 (MQ=255) ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTGTT‑GTTTTTTATGTAAAT‑AAT‑A‑CAAA‑TTTTAAAAAT‑ACGGGACAAACAA‑GCCAGATACGTCCAAAAAAtt > 2:336944/1‑140 (MQ=255) ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTGTT‑GGTTTTTTTGTAATT‑ACT‑A‑AACA‑TTTTAAAAAT‑AAGGGGAAAACAT‑TCCAATTAAGTCCAAAATAtt > 2:43474/1‑140 (MQ=255) ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTGTTT‑TTTTTTTATTGTATT‑TCT‑AGCAAT‑TTTATAAAAT‑AGGGCAAATAC‑T‑CCCAGTTTCTTCGaagctatg > 2:1819246/1‑134 (MQ=255) ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGGTTTTTTT‑TGTTTTTTTGTTATT‑ACTAA‑AAAA‑TTTTAAAAAA‑AC‑GGAAAAACAA‑ACCAAGTAATTACaaaaaaat > 1:122502/1‑136 (MQ=255) ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGGTTTTGTT‑TGTTTTTTTTTTATT‑TAT‑A‑AAAA‑ATTTTAAAAT‑AAGGGGAAAACAT‑CCCAGTTTATTCCAAAAGAtt > 1:1564853/1‑140 (MQ=255) ttttAAATTTCGACCCATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGTAATT‑ACT‑A‑CAAA‑TTTGAAAAAT‑ACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATgg < 2:1342243/140‑1 (MQ=255) ttttAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGTAATT‑ACT‑A‑CAAA‑TTTGAAAAAT‑ACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATgg < 2:1991484/140‑1 (MQ=255) ataCCTATTGAAACAAAGTAAAACAAACACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGTAATT‑ACT‑A‑CAAA‑TTTGAAAAAT‑ACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATg < 2:689970/140‑1 (MQ=255) taTTCAACCAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGTAATT‑ACT‑A‑CAAA‑TTTGAAAAAT‑ACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGt < 1:1682794/139‑1 (MQ=255) gATTGAAACAAAGTAAAACAAAAACTCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGTAATT‑ACT‑A‑CAAA‑TTTGAAAAAT‑ACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGt < 2:1252353/140‑1 (MQ=255) aaaCAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGTAATT‑ACT‑A‑CAAA‑TTTGAAAAAT‑ACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAAt < 2:1781864/140‑1 (MQ=255) aGTAAAACAAAAACGCCTGGGAAACCGGGCGTTGTTTTGTT‑GTTTTTTATGTAATT‑ACT‑A‑CAAA‑TTTGAAAAAT‑ACGGGAAAAACAT‑CCCATTTAATTCCCAAATATTTGATGGTAATTTTATGTTGGTAAAATTTGTAt > 2:385771/1‑140 (MQ=255) gaaaaaCAAACACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGTAATT‑ACT‑A‑CAAA‑TTTGAAAAAT‑ACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTAtt < 1:146222/138‑1 (MQ=255) aaccAAACACGCCTGGTAAACCGGTCTTTTATTTGTT‑CTTTATTAAGTAATT‑AAT‑A‑CAAA‑TTTGAAAAAT‑AAGTGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATTGTAATTTTATGTAGGTAAAATTTGTATTTgg < 2:1240336/137‑1 (MQ=255) aaccAAACACGCCTGGGAAACCGGGCGTTTGTTTCTA‑CTTTTTTATGTAATT‑ACT‑A‑CACA‑TTTGAAAAAT‑ACGGGCAACACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg < 1:502355/137‑1 (MQ=255) aaacaaacACGCCTGGTAAACCGGGAGTTTTTTTGTT‑CTTTTTTATGTAATT‑ACT‑A‑CAAA‑TTTGACAAAT‑ACGGGAAAAACAT‑CCCATTTACTTCCAAACTATTGGATGGTACTTTTATGTAGGTAAAATTTGTATTTgg < 2:1109576/140‑1 (MQ=255) aaacaaacACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGTAATT‑ACT‑A‑CAAA‑TTTGAAAAAT‑ACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg < 1:832878/140‑1 (MQ=255) aaacaaacACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGTAATT‑ACT‑A‑CAAA‑TTTGAAAAAT‑ACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg < 1:1525765/140‑1 (MQ=255) aaacaaacACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGTAATT‑ACT‑A‑CAAA‑TTTGAAAAAT‑ACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTGGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg < 2:507430/140‑1 (MQ=255) aaaCAAAACCGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGTAATT‑ACT‑A‑CAAA‑TTTGAAAAAT‑ACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg < 2:506852/140‑1 (MQ=255) aaaCAAAAACGCCTGGGAAACCGTGCGTTTTTTTGTT‑CTTTTTTATGTAATT‑ACT‑A‑CAAA‑TTTGAAAAAT‑ACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg < 2:152463/140‑1 (MQ=255) aaaCAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGTAATT‑ACT‑A‑CAAA‑TTTGAAAAAT‑ACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg < 2:1954814/140‑1 (MQ=255) aaaCAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGTAATT‑ACT‑A‑CAAA‑TTTGAAAAAT‑ACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg < 1:2032815/140‑1 (MQ=255) aaaCAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGTAATT‑ACT‑A‑CAAA‑TTTGAAAAAT‑ACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg < 2:793088/140‑1 (MQ=255) aaaCAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGTAATT‑ACT‑A‑CAAA‑TTTGAAAAAT‑ACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg < 2:792993/140‑1 (MQ=255) aaaCAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGTAATT‑ACT‑A‑CAAA‑TTTGAAAAAT‑ACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg < 2:1593106/140‑1 (MQ=255) aaaCAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGTAATT‑ACT‑A‑CAAA‑TTTGAAAAAT‑ACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg < 2:615446/140‑1 (MQ=255) aaaCAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGTAATT‑ACT‑A‑CAAA‑TTTGAAAAAT‑ACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg < 2:1076297/140‑1 (MQ=255) aaaCAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGTAATT‑ACT‑A‑CAAA‑TTTGAAAAAT‑ACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg < 2:233774/140‑1 (MQ=255) aCGCCTGGGAAACCGGGCGTTTTTTTTTT‑TTTTTTTATGTAATT‑AAT‑A‑CAAA‑ATTTAAAAAT‑AAGGGGAAAAAAA‑ACCAATTAATTACAAAATATTTGTTTGTAAATTTATTTATGTAAAATTTTTATTTTGGCGTTAag > 2:69547/1‑140 (MQ=255) gCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGTAATT‑ACT‑A‑CAAA‑TTTGAAAAAT‑ACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag < 2:892849/140‑1 (MQ=255) gCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGTAATT‑ACT‑A‑CAAA‑TTTGAAAAAT‑ACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag < 1:574867/140‑1 (MQ=255) cttttttttGTT‑ATTTTTTATGTAATT‑ACT‑A‑CAAA‑TTTGAAAAAT‑AAGGGAAATACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg < 2:1226867/138‑1 (MQ=255) cGTTTTTTTGTT‑CTTTTTTATGTAATT‑ACT‑A‑CAAA‑TTTGAAAAAT‑ACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg < 1:1230469/140‑1 (MQ=255) cGTTTTTTTGTT‑CTTTTTTATGTAATT‑ACT‑A‑CAAA‑TTTGAAAAAT‑ACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg < 1:1229905/140‑1 (MQ=255) cGTTTTTTTGTT‑CTTTTTTATGTAATT‑ACT‑A‑CAAA‑TTTGAAAAAT‑ACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg < 1:1730686/140‑1 (MQ=255) cGTTTTTTTGTT‑CTTTTTTATGTAATT‑ACT‑A‑CAAA‑TTTGAAAAAT‑ACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg < 1:953129/140‑1 (MQ=255) cGTTTTTTTGTT‑ATTTTTTATGTAATT‑ACT‑A‑CAAA‑TTTGAAAAAT‑ACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg < 2:1734230/140‑1 (MQ=255) | ATACGAGCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGTAATT‑ACT‑A‑CAAA‑TTTGAAAAAT‑ACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGG > NZ_CP034943/2991091‑2991363 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |