Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | ACB122 | 4,500,227 | 0 | A | C | 46.4% | 4.4 / 10.0 | 28 | G56G (GGT→GGG) | cysG_1 | Siroheme synthase |
Reads supporting (aligned to +/- strand): ref base A (12/3); new base C (9/4); total (21/7) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.70e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.49e-01 | |||||||||||
Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
GGCAGGCTAAGGGCCTGCGCATCGGCCGACACCTGGGCATTCAGCCCAGGGTCGTCAGTCGCCGCGATCACCAGCCGGCAACCGACCAGGTCGGCTGCCTGATAGCCACGCACCAGCACCTCACCGCCACCTTCCCGGGCCAACGCGGCCAACTGGCCGTCGACGTCCGGCGCCACCACGCGCAGCACGCCGCCGGCATCGGCCAGCAGGCGCGCCTTGCGCAAGGCGATCTCACCGCCACCGACGACCAGCACGCGGCC > ACB122/4500099‑4500358 | ggCAGGCTAAGGGCCTGCGCATCGGCCGACACCTGGGCATTCAGCCCAGGGTCGTCAGTCGCCGCGCTCACCAGCCGGCCACCGACCAGGTCGGCTGCCTGATAGCCACGCCCCAGCCCCTCACCGCCACCTTccc > 3:86227/1‑136 (MQ=255) gCTAAGGGCCTGCGCATCGGCCGACACCTGGGCATTCAGCCCAGGGTCGTCAGTCGCCGCGCTCACCAGCCGGCCACCCACCAGGTCCGCGGCCTGATAGCCCCGCCCCCGCCCCTCCCCGCCCCCGTCCCGCGcc > 5:58683/1‑136 (MQ=255) gcATCGGCCGACACCTGGGCATTCCGCCCAGGGTCGTCAGTCGCCGCGATCACCAGCCCGCAACCCGCCAGGTCGGCAGCCGGATAGCCACGCACCAGCCACTCCCCCCCCCCCTCCCGCGCCCACGCGGccccct > 4:2788/1‑132 (MQ=255) gcATCGGCCGACACCTGGGCATTCAGCCCAGGGTCGTCAGTCGCCGGGATCACCAGCCGGCCACCGACCCGGTCGGGTGCCAGAATGCCCCGCACCAGCACCTCCCCGCCACCATCCCCGGCCCACCCGGccca > 3:49240/1‑132 (MQ=255) gcATCGGCCGACACCTGGGCATTCAGCCCAGGGTCGTCAGTCGCCGCGATCCCCAGCCGGCAACCGCCCAGGTCGGCTGCCTGCTAGCCACGCACCAGCCCCGCACCCCCCCCTTCCCCGGCCAACCCGGCCAACt > 4:282100/1‑136 (MQ=255) gcATCGGCCGACACCTGGGCATTCAGCCCAGGGTCGTCAGTCGCCGCGATCACCAGCCGGCAACCGCCCAGGTCGGCTGCCTGATAGCCACGCACCAGCACCTCACCGCCACCTTCCCGGGCCAACGCGGCCAACt > 4:130991/1‑136 (MQ=255) gcATCGGCCGACACCTGGGCATTCAGCCCAGGGTCGTCAGTCGCCGCGATCACCAGCCGGCAACCGCCCAGGTCGGCAGCCTGATAGCCACGCACCCGCCCCTCCCCGCCACCGTCCCGGGCCCCCGCGGCCa > 2:60766/1‑133 (MQ=255) gcATCGGCCGACACCTGGGCATTCAGCCCAGGGTCGTCAGTCGCCGCGAAAACCAGCCGGCCACCGCCCAGGTCGGCAGCCTGATAGCCAAGCACCAGCACCTCCCCCCCCCCTTacccggccaacccggcca > 1:105484/1‑133 (MQ=255) ccGACACCTGGGCATTCAGCCCAGGGTCGTCAGTCGCCGCGCTCACCAGCCGGCAACCGCCCAGGTCGGCTGCCTGATAGCCACGCACCCGCACCTCACCGCCCCCTTCCCGGGCCCACGCGGCCAACTGGCCGTc > 7:29095/1‑136 (MQ=255) acCTGGGCATTCAGCCCAGGGTCGTCAGTCGCCGCGATCACCAGCCGGCAACCGACCAGGTCGGCTGCCTGATAGCCACGCACCCGCCCCTCACCCCCCCCATCCCCGGCCAACGCGGCCCACAGGCCCTCGCCGt > 6:269716/1‑136 (MQ=255) tGGGCATTCAGCCCAGGGTCGTCAGTCGCCGCGAGCACCAGCCGGCAACCGACCAGGTCGGCTGCCTGATAGCCACGCACCAGCACCTCACCGCCACCTTCCCGGGCCAACGCGGCCAACTGGCCGTCGACGTCCg < 7:265565/136‑1 (MQ=255) cgtcAGTCGCCGCGCTCACCAGCCGGCAACCGACCAGGTCGGCTACCTGATAGCCACGCCCCCGCACCTCACCGCCCCCTTCCCGGGCCAACGCGGCCAACTGGCCGTCGACGTCCGGCGCCACCCCGcgccgccc > 7:283037/1‑134 (MQ=255) gTCGCCGCGATCACCAGCCGGCAACCGACCAGGTCGGCTGCCTGATAGCCACGCCCCAGCACCTCACCGCCCCCTTCCCGGGCCCACGCGGCCAACAGGCCGTCGACGTCCGGCGCCCCCCCGCGCCGCAcgccgc > 7:183481/1‑136 (MQ=255) gTCGCCGCGATCACCAGCCGGCAACCGACCAGGTCGGCTGCCTGATAGCCACGCACCAGCACCTCACCGCCAcc < 7:80578/74‑1 (MQ=255) gTCGCCGCGATCACCAGCCGGCAACCCACCAGGTCGGCTGCCTGATAGCCACGCACCAGCACCTCACCGCCAcc > 8:80578/1‑74 (MQ=255) cgCCGTCAACCGCCCCGGTCGGAGGCCTGATCGCCACGCCCCAGCACCGCCCCGCCACCTTCCCGGGCCAACGCGGCCACCGGGCCGTCGACGTCCGGCGCCACCACGCGCAGCACGCCGCCGGCATCGGCcagca < 8:166477/135‑1 (MQ=255) ccccGCCAACCGCCCAGGGCGGCTGCCTGATCGCCCCCCCCCACCACCTCCCCCCCCCCTCCCCGGCCCAACGCGCCCAACTGGCCGGCGACGTCCGGCGCCACCACGCGCAGCACGCCGCCGGCATCGGCcagca < 4:271443/134‑1 (MQ=255) aGGTCGGCTGCCTGATAGCCACGCACCAGCACCTCACCGCCACCTTCCCGGGCCAACGCGGCCAACTGGCCGTCGCCGTCCGGCGCCACCCCGCGCAGCACGCCGCCGGCATCGGCCAGCAGGCGCGCCGGgcgc > 5:230937/1‑135 (MQ=255) cGGCTGCCTGATAGCCACCCACACCCACCTCACCCCCCCCTACCCGGCCCACCGCGGCCAACTGGCCGTCGACGTCCGGCGCCACCACGCGCAGCACGCCGCCGGCATCGGCCAGCAGGCGCGCCTTGCGCAAGGc < 3:282100/136‑1 (MQ=255) tGCCTGATAGCCACGCACCCGCACCTCACCGCCACCGTCCCGGGCCCCCGCGGCCAACTGGCCGGCGCCGGCCGGCGCCCCCACGCGCCGCCCGCCGCCGGCAGCGGCCAGCAGGCGCGCCGTGCGCCCGGCGagc > 5:263233/1‑134 (MQ=255) tGCCTGATAGCCACGCACCAGCACCTCACCGCCCCCTTCCCGGGCCAACGCGGCCAACTGGCCGTCGACGTCCGGCGCCCCCACGCGCAGCACGCCGCCGGCCTCGGCCCGCAGGCGCGCCTTGCGCACGGCGAtc > 3:22365/1‑136 (MQ=255) aTACCCCCGCACCCCCCCCTCCCCCCCCCATCCCGGGGCCACGGCGGCAAAGGGGCGGGCGACGTCGGGCGCCACCACGCGCAGCACGCCGCCGGCATCGGCCAGCAGGCGCGCCTTGCGCAAGGCGATCTCAc < 1:266113/134‑1 (MQ=255) tAGCCACGCACCAGCACCTCACCGCCACCTTCCCGGGCCAACGCGGCCAACTGGCCGTCGACGTCCGGCGCCACCACGCGCCGCACGCCGCCGGCATCGGCCAGCAGGCGCGCCTTGCGCAAGGCGCTCTCCCCGc > 6:237813/1‑136 (MQ=255) ccACCAGCACCTCACCGCCCCCTTCCCGGGCCACCGCGGCCAACTGGCCGTCGACGTCCGGCGCCACCACGCGCAGCACGCCGCCGGCATCGGCCAGCAGGCGCGCCTTGCGCAAGGCGATCTCACCGCCACcgac < 7:269490/135‑1 (MQ=255) cACCAGCACCTCACCGCCACCTTCCCGGGCCAACGCGGCCAACTGGCCGTCGACGTCCGGCGCCACCACGCGCAGCACGCCGCCGGCATCGGCCAGCAGGCGCGCCTTGCGCAAGGCGCTCTCACCGCCCCcgac > 2:165973/1‑135 (MQ=255) aCCAGCACCTCACCGCCACCTTCCCGGGCCAACGCGGCCAACTGGCCGTCGACGTCCGGCGCCACCACGCGCAGCACGCCGCCGGCATCGGCCAGCAGGCGCGCCTTGCGCAACGCGATCTCACCGCCACcgacga > 3:41554/1‑136 (MQ=255) ccTCACCGCCACCTTCCCGGGCCAACGCGGCCAACTGGCCGTCGACGTCCGGCGCCACCCCGCGCAGCCCGCCGCCGGCATCGGCCAGCAGGCGCGCCTTGCGCCAGGCGCTCTCACCGCCACCCACGcccccca > 2:121228/1‑131 (MQ=255) cGCCACCTTCCCGGGCCAACGCGGCCAACTGGCCGTCGACGTCCGGCGCCACCACGCGCAGCACGCCGCCGGCATCGGCCAGCAGGCGCGCCTTGCGCCAGGCGCTCTCCCCGCCCCCGCCCCCCCGCCCGCGgcc > 5:216397/1‑136 (MQ=255) | GGCAGGCTAAGGGCCTGCGCATCGGCCGACACCTGGGCATTCAGCCCAGGGTCGTCAGTCGCCGCGATCACCAGCCGGCAACCGACCAGGTCGGCTGCCTGATAGCCACGCACCAGCACCTCACCGCCACCTTCCCGGGCCAACGCGGCCAACTGGCCGTCGACGTCCGGCGCCACCACGCGCAGCACGCCGCCGGCATCGGCCAGCAGGCGCGCCTTGCGCAAGGCGATCTCACCGCCACCGACGACCAGCACGCGGCC > ACB122/4500099‑4500358 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |