Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | ACB122 | 4,807,809 | 0 | G | C | 35.0% | 100.1 / 15.1 | 62 | E70Q (GAA→CAA) | mcbC | Microcin B17‑processing protein McbC |
Reads supporting (aligned to +/- strand): ref base G (29/10); new base C (0/21); total (29/33) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.09e-09 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
AAAGGCAACTATACGATACACAAAGCAACTCAACACTTGAGCGCCCTGCACCAAATACCACCAAAAGACCTCGAAAAACTTACCGGAAACGAACTAAAACTCAATACCATTGTAGCCCCAAGCAAAAACAAA‑GAACCGACTCTTACACCTCTGGCGAGCCCACACCCGCTACGAAGAAATAGTTCATGCGAACGATTTGAAGCACGCCCTCTTCACTTTGATATAGTCCAAGCATTGCTTGCACCGCTCTTAACTAAAAGCCCT > ACB122/4807677‑4807940 | aaaGGCAAATATACGAAACAAAAAGCAAATCAACACTTTAGCGCCCTGCACAAAATACCACCAAAAGACCTCTAAAAACTTACCGCAAACGAACTAAAACTAAATACCATTGTAGCCCCAAGCAAAAACAAA‑GAAc < 7:267924/136‑1 (MQ=255) gCAACTATACGATACACAAAGCAACTCAACACTTGAGCGCCCTGCACCAAATACCACCAAAAGACCTCGAAAAACTTACCGGAAACGAACTAAAACTCAATACCATTGTAGCCCCAAGCAAAAACAAA‑GACCCGAc > 7:240328/1‑136 (MQ=255) cAACTATACGATACACAAAGCAACTCAACACTTGAGCGCCCTGCACCAAATACCACCAAAAGACCTCGAAAAACTTACCGGAAACGAACTAAAACTCAATACCATTGTCGCCCCAAGCAAAAACAAA‑GAACCGAct > 8:76814/1‑136 (MQ=255) cAACTATACGATACACAAAGCAACTCAACACTTGAGCGCCCTGCACCAAATACCACCAAAAGACCTCGAAAAACTTACCGGAAACGAACTAAAACTCAATACCATTGTAGCCCCAAGCAAAAACAAA‑GAACCGAct > 5:129022/1‑136 (MQ=255) aaaaataCCAAACACAAAGCAACTCAACACTTCCGCGCCCTCCACAAAATACAACCAAAACACCTCGAAAAACTTCCCGGAAACCAACAAAAACTCAAACCCATTGACCCCCCAACAAAAAAAAAC‑CACCCGActc < 6:71556/132‑1 (MQ=255) acacAAAGCAACTCAACACTTGAGCGCCCTGCACCAAATACCACCAAAAGACCTCGAAAAACTTACCGGAAACGAACTAAAACTCAATACCATTGTAGCCCCAAGCAAAAACAAA‑GAACCGACTCTTACACCTCTg > 6:245352/1‑136 (MQ=255) acacAAACCAACTCACCACTTCAGCGCCCTCCACCAAAAACCACAAAAAGACCTCTAAAAACTAACCGTAAACCAACAAAAACTCAATACAATTGTACCCCCAACCAAAAACAAC‑CAACCGACTCTTACACCTCTg < 7:175242/136‑1 (MQ=255) acaAAGCAACTCAACACTTGAGCGCCCTGCACCAAATACCACCAAAAGACCTCGAAAAACTTACCGGAAACGAACTAAAACTCAATACCATTGTAGCCCCAAGCAAAAACAAA‑GAACCGACTCTTACACCTCTgg > 2:88046/1‑135 (MQ=255) aaaGCAACTCAACACTTGAGCGCCCTGCACCAAATACCACCAAAAGACCTCGAAAAACTTACCGGAAACGAACTAAAACTCAATACCATTGTAGCCCCAAGCAAAAACAAA‑GAACCGACTCTTACACCTCTGGc > 7:253322/1‑134 (MQ=255) aaaGCAACTCAACACTTGAGCGCCCTGCACCAAATACCACCAAAAGACCTCGAAAAACTTACCGGAAACGAACTAAAACTCAATACCATTGTAGCCCCAAGCAAAAACAAA‑GAACCGACTCTTACACCTCTGGc > 3:146401/1‑134 (MQ=255) aaGCAACTCAACACTTGAGCGCCCTGCACCAAATACCACCAAAAGACCTCGAAAAACTTACCGGAAACGAACTAAAACTCAATACCATTGTAGCCCCAAGCAAAAACAAA‑GAACCGACTCTTACACCTCTGGCGa > 1:118634/1‑135 (MQ=255) aaGCAACTCAACACTTGAGCGCCCTGCACCAAATACCACCAAAAGACCTCGAAAAACTTACCGGAAACGAACTAAAACTCAATACCATTGTAGCCCCAAGCAAAAACAAA‑GAACCGACTCTTACACCTCTGGCGAg > 8:309178/1‑136 (MQ=255) aaCTCAACACTTGAGCGCCCTGCACCAAATACAACCAAAAGACCTCGAAAAACTTACCGGAAACGAACTAAAACTCAATACCATTGTAGCCCCAAGCAAAAACAAA‑GAACCGACTCTTACACCTCTGGCGAGCCca > 8:175242/1‑136 (MQ=255) tCAACACTTGAGCGCCCTGCACCAAATACCACCAAAAGACCTCGAAAAACTTACCGGAAACGAACTAAAACTCAATACCATTGTAGCCCCAAGCAAAAACAAA‑GAACCGACTCTTACACCTCTGGCGAGCCcaccc > 5:323547/1‑134 (MQ=255) aaCACTTGAGCGCCCTGCACCAAATACCACCAAAAGACCTCGAAAAACTTACCGGAAACGAACTAAAACTCAATACCATTGTAGCCCCAAGCAAAAACAAA‑GAACCGACTCTTACACCTCTGGCGAGCCCACAccc > 4:287870/1‑136 (MQ=255) acTTGCGCCCCCTCCACCAAAAACCACCAAACCACCTCTAAAAACTAACCGCAACCCAACAAAAACACAAAACCATTGTCCCCCCACCCAAAAACAAA‑CAACCGACTCTTACACCTCTGGCGAGCCCACACCCGCt < 5:301454/136‑1 (MQ=255) acTTGACCGCCCTGCACCAAAAACCACCAAAACACCTCTAAAAAATTACCGCAAACCAAAAAAAACTCAAAACCATTGTAGCCCCAACAAAAAACAAA‑CACCCGACTCTTACACCTCTGGCGAGCCCACACCCGCt < 5:119806/136‑1 (MQ=255) acTTCAGCGCCCTCCACAAAAACCCACCAAAACACCTCTAAAAACTTACCGTAAACCAACAAAAACACAATACCATTGTCGCCCCAACAAAAAACAAA‑CACCCGACTCTTACACCTCTGGCGAGCCCACACCCGCt < 7:135464/136‑1 (MQ=255) aGCGCCGTGCACCAAATACCACCAAAAGACCTCGAAAAACTTACCGGAAACGAACTAAAACTCAATACCATTGTAGCCCCAAGCAAAAACAAA‑GAACCGACTCTTACACCTCTGGCGAGCCAACCCCCGCTACg > 8:315219/1‑134 (MQ=255) aGCGCCCTCAACCAAAAACCACAAAAACACCTCAAAAAAATAACCGAAACCCAAAAAAAACTCAAAACCTTTG‑ACCCCCAAACAAAAACAAACCACCCGACTCTTACACCTCTGGCGAGCCCACACCCGCTACga < 3:287870/135‑1 (MQ=255) gcgcACTACACAAAAAACAAACAAACGACCTCTAAAAAATTCAGTTAAACAAAATAAAAAACAATAAATTTCTAGCCCAACAAAAAAAAAAA‑CAACCGACTCTTACACCTCTGGCGAGCCCACACCCGCTACgaag < 8:300396/136‑1 (MQ=255) tGCACCAAATACCACCAAAAGACCTCGAAAAACTTACCGGAAACGAACTAAAACTCAATACCATTGTAGCCCCAAGCAAAAACAAA‑GAACCGACTCTTACACCTCTGGCGAGCCCACACCCGCTACGAAGAAATAg > 7:32758/1‑136 (MQ=255) aCCAAATACCACCAAAAGACCTCGAAAAACTTACCGGAAACGAACTAAAACTCAATACCATTGTAGCCCCAAGCAAAAACAAA‑GAACCGACTCTTACACCTCTGGCGAGCCCACACCCGCTACGAAGAAATAGtt > 7:53620/1‑135 (MQ=255) aCCAAATACCACCAAAAGACCTCGAAAAACTTACCGGAAACGAACTAAAACTCAATACCATTGTAGCCCCAAGCAAAAACAAA‑GAACCGACTCTTACACCTCTGGCGAGCCCACACCCGCTACGAAGAAATAGt > 1:337845/1‑134 (MQ=255) aaaTACCACCAAACCACCTCAAAAAACTAACCGCAACCGAACAAAAACTCAATACCATTGTCCCCCCAACCAAAAACAAA‑CACCCGACTCTTACACCTCTGGCGAGCCCACACCCGCTACGAAGAAATAGTTCATg < 5:161807/136‑1 (MQ=255) aaTACCACCAAAACCCCTCCAAAAACTTACCGGAAACGAACTAAAACTCAAAACCATTGAACCCCCAAGCAAAAACAAA‑CAACCGACTCTTACACCTCTGGCGAGCCCACACCCGCTACGAAGAAATAGTTCATGc < 3:286512/136‑1 (MQ=255) aaTACCACAAAACCACATCTAAAAAATAACCTTAACCCAAATAAAACTAATTACCTTTTTAGCCACAACAAAAAACAAA‑TAACCGACTCTTACACCTCTGGCGAGCCCACACCCGCTACGAAGAAATAGTTCATGc < 6:121687/136‑1 (MQ=255) accaccAAAAGACCTCGAAAAACTTACCGGAAACGAACTAAAACTCAAAACCATTGTAGCCCCAAGCAAAAACAAA‑GAACCGACTCTTAAACCTCTGGCGAGCACACACCCGCTACCAAGAAATAGTTCATGCCaa > 5:121687/1‑136 (MQ=255) caAAAGACCTCGAAAAACTTACCGGAAACGAACTAAAACTCAATACCATTGTAGCCCCAAGCAAAAACAAA‑GAACCGCCTCTTACACCTCTGGCGAGCCCACACCCGCTACGAAGAAATAGTTCATGCGAACGAtt > 5:71360/1‑136 (MQ=255) caAAAGACCTCGAAAAACTTACCGGAAACGAACTAAAACTCAATACCATTGTAGCCCCAAGCAAAAACAAA‑GAACCGACTCTTACACCTCTGGCGAGCCCACACCCGCTACGAAGAAATAGTTCATGCGAACGAtt > 7:21431/1‑136 (MQ=255) caAAAGACCTCGAAAAACTTACCGGAAACGAACTAAAACTCAATACCATTGTAGCCCCAAGCAAAAACAAA‑GAACCGACTCTTACACCTCTGGCGAGCCCACACCCGCGACGAAGAAATAGTTCATGCGAACGAtt > 4:60778/1‑136 (MQ=255) gACCTCGAAAAACTTACCGGAAACGAACTAAAACTCAATACCATTGTAGCCCCAAGCAAAAACAAA‑GAACCGACTCTTACACCTCTGGCGAGCCCACACCCGCTACGAAGAAATAGTTCATGCGAACGATTTGAAg > 6:104905/1‑136 (MQ=255) accccaaaaaaCAAACCCCAAACCAAAAAAAACAAAAAACCATTGACCCCCCAACCAAAAAAAAA‑CACCCGACTCTTACACCTCTGGCGAGCCCACACCCGCTACGAAGAAATAGTTCATGCGAACGATTTGAAGc < 7:309178/130‑1 (MQ=255) tctaaaaaCTACCCGCAAACAAAATAAAACAAAATACCATTGTAGCCCAAACAAAAAACAAA‑CAACCGACTCTTACACCTCTGGCGAGCCCACACCCGCTACGAAGAAATAGTTCATGCGAACGATTTGAAGCAc < 1:88046/132‑1 (MQ=255) cGAAAAACTTACCGGAACCGAACTAACACTCAATACCATTGTAGCCCCAAGCAAAAACAAA‑GAACCGACTCTTACACCTCTGGCGAGCCCCCACCCGCTACGAAGAAATAGTTCCTGCGAACGATTTGAAGCACGc > 7:199166/1‑136 (MQ=255) cGAAAAACTTACCGGAAACGAACGAAAACTCAATACCATTGTAGCCCCAAGCAACAACAAA‑GATCCGACGCTTACACCTCTGGCGAGCCCCCCCCCGCTACGAAGAAATAGTTCATGCGCACGCTTTGAAGCACGc > 7:204213/1‑136 (MQ=255) aacacatACCGCAAACGCACAAAAACTCCATACCATTTTCGCCCACACAAAAAAAAAC‑GAACCGACTCTTACACATCTGGCGAGCCCACCCCAGCTACGAAGAAATAGTTCATGCGAACGATTTGAAGCACGCCct < 8:204213/130‑1 (MQ=255) aacaCTTACCGGAAACGAACAAAACCTCAATCCCTTTGACGCCCCAACCAAAAACAAC‑GAACCGACTCTTACACCTCTGGCGAGCCCACACCCGCTACGAAGAAATAGTTCATGCGAACGATTTGAAGCACGCCct < 8:199166/133‑1 (MQ=255) aaaaCTTACCGGAAACGAACTAAAACTCAATACCATTGTAGCCCCAAGCAAAAACAAA‑GAACCGACTCTTACACCTCTGGCGAGCCCACACCCGCTACGAAGAAATAGTTCATGCGAACGATTTGAAGCACGCCct < 4:316286/136‑1 (MQ=255) aaaaCTTACCGCAAACGAACTAAAACTCAATACCATTGTAGCCCCAAGCAAAAACAAA‑GAACCGACTCTTACACCTCTGGCGAGCCCACACCCGCTACGAAGAAATAGTTCATGCGAACGATTTGAAGCACGCCct < 4:119267/136‑1 (MQ=255) aaaaCTTACCCTAAAACAAAAAAAAATAAATACATTTCTCCCCCCAACAAAAAAAAAC‑CCCCCGACTCTTACACCTCTGGCGAGCCCACACCCGCTACGAAGAAATAGTTCATGCGAACGATTTGAAGCACGCCct < 6:323547/136‑1 (MQ=255) aaaaATAACCGTAAACAAAAAAAAAATAAATACAATTGTAGCCCCACCAAAAAACAAA‑CAACCGACTCTTACACCTCTGGCGAGCCCACACCCGCTACGAAGAAATAGTTCATGCGAACGATTTGAAGCACGCCct < 8:128965/136‑1 (MQ=255) aaaCTAACCGCAAACCAACAAAACCAAAATCCCATTGTCGCCCCAACCAAAAAAAAA‑CAACCGACTCTTACACCTCTGGCGAGCCCACACCCGCTACGAAGAAATAGTTCATGCGAACGATTTGAAGCACGCCct < 1:111181/135‑1 (MQ=255) cTTACCTCAAACCAACAAAAACACAAAACAATTTTCCCCCACACAAAAAACAAA‑CAACCGACTCTTACACCTCTGGCGAGCCCACACCCGCTACGAAGAAATAGTTCATGCGAACGATTTGAAGCACGCCCTCTTc < 5:117318/136‑1 (MQ=255) ttACCGGAAACGAAATAAAACTCAATACCATTGTAGCCCCAATCAAAAACAAA‑CAACCGACTCTTACACCTCCGGCGAGCCCACACCCGCTACGAAGAAATAGTTCATGCGAACGATTTGAAGCACGCCCTCTTCa < 8:16499/136‑1 (MQ=255) cGGAAACGAAATAAAACTCAATACCATTGTAGCCCCAAGGAAAAACAAA‑GAACCCACTCATACTCCTCTGGCGAGCCCCCACACGCTACGAAGAAAAAGTTCAGGCGAACTATTTGAAGCACGCCCTCTTCACtaa > 5:107235/1‑134 (MQ=255) ggAAACGAAATAAAACTCAATACCATTGTAGCCCCAAGCAAAACCAAC‑GACCCGACTCTTACACCTCTGGCGAGCCCACACCCGCTACGAAGAAATAGTTCATGCGAACGATTTGAAGCACGCCCTCTTCACTTTg < 8:240328/136‑1 (MQ=255) gcaaaCCAACTAAAACTCAATACCATTGTAGCCCAAAGAAAAAACAAA‑GAACCGACTCTTACACCTCTGGCGAGCCCACACCCGCTACGAAGAAATAGTTCATGCGAACGATTTGAAGCACGCCCTCTTCACTTTg < 8:21431/134‑1 (MQ=255) gAAACTAACTAAAAATAAATACCATTGTAGCCCCAAGCAAAAACAAA‑TAACCGACTCTTACACCTCTGGCGAGCCCACACCCGCTACGAAGAAATAGTTCATGCGAACGATTTGAAGCACGCCCTCTTCACTTTg < 2:98586/135‑1 (MQ=255) cGAACTAAAACTCAATACAATTGTAGCCCCAAGCAAAAACAAA‑GAACCGACTCTTACACCTCTGGCGAGCCCACACCCGCTACGAAGAAATAGTTCATGCGAACGATTTGAAGCACGCCCTCTTCACTTTGAtata < 4:146401/136‑1 (MQ=255) tAAAACTCAAAAACATTGTCGCCCCAAGCAAAAACAAA‑CAACCGACTCTTACACCTCTGGCGAGCCCACACCCGCTACGAAGAAATAGTTCATGCGAACGATTTGAAGCACGCCCTCTTCACTTTGATATAGTCCa < 8:323062/136‑1 (MQ=255) aacaCTCAATCCCATTGTAGCCCCACGCACAAACAAC‑GACCCGACTCTTACACCTCTGGCGAGCCCACACCCGCTACGAAGAAATAGTTCATGCGAACGATTTGAAGCACGCCCTCTTCACTTTGATATAGTCCa < 2:276814/132‑1 (MQ=255) aaaaCCAAATACCATTGTACCCCCACCCAAAAACAAC‑GACCCGACTCTTACACCTCTGGCGAGCCCACACCCGCTACGAAGAAATAGTTCATGCGAACGATTTGAAGCACGCCCTCTTCACTTTGATATAGTCCa < 1:309620/135‑1 (MQ=255) aaaCTCAAAACCATGGTAGCCCCAACAAAAAACAAA‑CACCCGACTCTTACACCTCTGGCGAGCCCACACCCGCTACGAAGAAATAGTTCATGCGAACGATTTGAAGCACGCCCTCTTCACTTTGATATAGTCCaa < 2:79693/135‑1 (MQ=255) tACCATTGTAGCCCCAAGCAAAAACAAA‑CAACCGACTCTTACACCTCTGGCGAGCCCACACCCGCTACGAAGAAATAGTTCATGCGAACGATTTGAAGCACGCCCTCTTCACTTTGATATAGTCCAAGCAttgctt < 6:61606/136‑1 (MQ=255) aCCATTGTAGCCCCAAGCAAAAACAAA‑GAACCGACTCTTACACCTCTGGCGAGCCCACACCCGCTACGAAGAAATAGTTCATGCGAACGATTTGAAGCACGCCCTCTTCACTTTGATATAGTCCAAGCAttgcttg > 3:302177/1‑136 (MQ=255) tAGCCCCAAGCAAAAACAAA‑GAACCGACTCTTACACCTCTGGCGAGCTCACACCCGCTACGAAGAAATAGTTCATGCGAACGATTTGAAGCACGCCCTCTTCACTTTGATATAGTCCAAGCATTGCTTGCACCGct > 4:79580/1‑136 (MQ=255) cacccccAACCAAAAACAAA‑CACCCGACTCTTACACCTCTGGCGAGCCCACACCCGCTACGAAGAAATAGTTCATGCGAACGATTTGAAGCACGCCCTCTTCACTTTGATATAGTCCAAGCATTGCTTGCACCGct < 5:308046/133‑1 (MQ=255) ccccAAGCAAAAACAAA‑GAACCGACTCTTACACCTCTGGCGAGCCCACACCCGCTACGAAGAAATAGTTCATGCGAACGATTTGAAGCACGCCCTCTTCACTTTGATATAGTCCAAGCATTGCTTGCACCGctct > 8:47583/1‑135 (MQ=255) aaaaaCAAA‑GAACCGACTCTTACACCTCTGGCGAGCCCACTCCCGCTACGAAGAAATAGTTCATGCGAACGATTTGAAGCACGCCCTCTTCACTTTGATATAGTCCAAGCATTGCTTGCACCGCTCTTAACTa > 1:36349/1‑133 (MQ=255) aaaaaCAAA‑GAACCGACTCTTACACCTCTGGCGAGCCCACACCCGCTACGAAGAAATAGTTCATGCGAACGATTTGAAGCACGCCCTCTTCACTTTCATATAGTCCAAGCATTGCTTGCACCGCTCTTAACTa > 1:281943/1‑133 (MQ=255) cAAA‑CACCCGACTCTTACACCTCTGGCGAGCCCACACCCGCTACGAAGAAATAGTTCATGCGAACGATTTGAAGCACGCCCTCTTCACTTTGATATAGTCCAAGCATTGCTTGCACCGCTCTTAACTAAAAGCCCt < 7:142056/136‑1 (MQ=255) | AAAGGCAACTATACGATACACAAAGCAACTCAACACTTGAGCGCCCTGCACCAAATACCACCAAAAGACCTCGAAAAACTTACCGGAAACGAACTAAAACTCAATACCATTGTAGCCCCAAGCAAAAACAAA‑GAACCGACTCTTACACCTCTGGCGAGCCCACACCCGCTACGAAGAAATAGTTCATGCGAACGATTTGAAGCACGCCCTCTTCACTTTGATATAGTCCAAGCATTGCTTGCACCGCTCTTAACTAAAAGCCCT > ACB122/4807677‑4807940 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |