Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | ACB122 | 1,157,983 | A→C | 22.3% | S162A (TCG→GCG) | hexR_1 ← | HTH‑type transcriptional regulator HexR |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | ACB122 | 1,157,983 | 0 | A | C | 22.3% | 80.7 / 2.2 | 63 | S162A (TCG→GCG) | hexR_1 | HTH‑type transcriptional regulator HexR |
Reads supporting (aligned to +/- strand): ref base A (25/21); new base C (11/4); total (38/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.38e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GTTTTCACGTGCCAGGCGCGCCACTTCGACCAGTTCGCGGGTGCGCCCGGTGTAGGAAATGATCACGAACAGATCGCCGGTGTGGGCGACCGAGGCCAGCATGCGCTGCATCAGCACATCGGCGTGGGCCGACACGGCCAGGTTGAAGCGGAAGAACTTGTGCTGCGCATCCAGGGCCACCGGGGCTGAGGCGCCGAGGCCGAAGAAGTGGATCTGCCGGGCCTGGATCATCATGTCCACGGCGCGGCTGACCTGCTGCGGG > ACB122/1157852‑1158113 | gTTTTCCCGGGCCCGGCGCGCCGCTGCGACCAGTGCGCGGGGGCGCCCGGTGTAGCAAATGATCACGAACAGAGCGCCGGTGGGGGCGACCGAGGCCAGCATGCGCTGCATCAGCACAGCGGCGTGGGCCGacac < 6:51909/135‑1 (MQ=255) gtttCACGTGCCAGGCGCGCCACTTCGACCAGTTCGCGGGTGCGCCCGGTGTAGGAAATGCGCACGCACAGATCGCCGGTGTGGGCGCCCGAGGCCCGCATGCGCTGCATCAGCACATCGGCGTGGGCCGACCCg > 4:197620/2‑135 (MQ=255) aCGTGCCAGGCGCGCCACTTCGACCAGTTCGCGGGTGCGCCCGGTGTAGGAAATGATCACGAACAGATCGCCGGTGTGGGCGACCGAGGCCAGCATGCGCTGCATCAGCACATCGGCGTGGGGCGCCACCGcccc > 1:434260/1‑133 (MQ=255) cGTCCCCGGCGCGCCACTTCGACCAGTTCGCGGGGGCGCCCGGTGTAGTAAATGAGCACGAACAGATCGCCGTTGTGGGCGACCGAGGCCAGCATGCGCTGCATCAGCACATCGGCGTGGGCCGACACGGCCAgg < 4:159056/135‑1 (MQ=255) ggCGCGCCATTGCGACCTGTGCGGGGGGGCGCCCGGTGTAGGAACTGAGCACGAACCGATCGCCGGTGGGGGGGACCGAGGCCAGCAGGGGCTGCATCAGCACAGCGGGGTGGGCCGACACGGCCAGGTTGAAGc < 6:57138/135‑1 (MQ=255) ggCGCGCCACTTCGACCAGTTCGCGGGTGCGCCCGGTGTAGTAAATTATCACGAACAGATCGCGGGTGTGGGCGACCGAGGCCAGCATGCGCTGCATCAGCACATCGGCGTGGGCCGACACGGCCAGGTTGAAGc < 5:128214/135‑1 (MQ=255) ggCGCGCCACTTCGACCAGTTCGCGGGTGCGCCCGGTGTAGGAAATGATCACGAACAGATCGCCGGTGTGGGCGACCGAGGCCAGCATGCGCTGCATCAGCACATCGGCGTGGGGCGCCCCGGCCAGGGTGAAGc > 3:293350/1‑135 (MQ=255) ctgcGACCAGTGCGCGGGTGCGCCCGGTGTTGGAAATGATCACGAACAGATCGCCGGGGGGGGCGACCGAGGCCCGCATGCGCTGAATCAGCACATCGGCGGGGCCCGACACGGCCAGGTTGAAGCGGAAGAACt < 3:357059/132‑1 (MQ=255) gACCTGTTCGCGGGGGCGCCGGGTGTAGCAAATGACCACTAACCGTGGGCGGGTGTGGGCGACCGAGGACAGCATGCGGGGCATCAGCACATCGGCGTGGGCCTACACGGCCAGGTTGAAGCGGAAGAACTtgtg < 6:284921/135‑1 (MQ=255) gACCAGTTCGCGGGTGCGCCCGGTGTAGGAAATGATCACGAACAGATCGCCGGTGTGGGCGACCGAGGCCAGCATGCGCTGCATCAGCACATCGGCGTGGGCCGACACGGCCAGGTTGAAGCGGAAGAACTtgt < 8:33087/134‑1 (MQ=255) aCCAGTTCGCGGGTGCGCCCGGTGTATGTAATCAGCACGAACAGATCGCCGGTGTGGGCGACCGAGGCCTGCATGCGCTGCATCAGCACAGCGGCGTGGGCCGACACGGCCAGGTTGAAGCGGAAGAACTtgtg < 8:417980/134‑1 (MQ=255) gcgGGTGCGCCCGGTGTAGGAAATGATCACGAACAGATCGCCGGTGTGGGCGACCGAGGCCAGCATGCGCTGCATCAGCACATCGGCGTGGGGCGCCCCCGGCCGGGTGGAGCGGAAGAACTTGTGCTGCGCCTc > 5:53395/1‑135 (MQ=255) gcgGGTGCGCCCGGTGTAGGAAATGATCACGAACAGATCGCCGGTGTGGGCGACCGAGGCCAGCATGCGCTGCATCAGCACATCGGCGTGGGCCGACACGGCCAGGTTTAAGCGGAAGAACTTGTGCTGCACAt > 4:421419/1‑134 (MQ=255) gcgcCGGGTGGAGCAAAGCATCCCCACCCGAGCGCCGGTGGGGGCGACCGAGGCCAGCTGGCGCTGCATCCGCACAGCGGCGGGGGCCGACACGGCCAGGTTGAAGCGGAAGAACTTGTGCTGCGCATCCAGGGc < 1:114946/135‑1 (MQ=255) gcgcCCGGGGTAGCAAATTAACACGAACCCAGCGCCGGGGGGGGCGCCCGAGGCCAGCATGCGCTCCATCAGCACAGGGGCGTGGGCCCCCACGGCCAGGTTGAAGCGGAAGAACTTGTGCTGCGCATCCAGGGc < 5:92763/135‑1 (MQ=255) gtgaAGGAAATCACCCCGACCCGAGCGCCGGGGTGGGCGACCGCGGCCCGCAGGCGCGGCAGCCGCACAGCGGCGGGGGCCGACACGGCCAGGTTGAAGCGGAAGAACTTGTGCTGCGCATCCAGGGCCACCggg < 4:293350/135‑1 (MQ=255) aGGAAATGATCACGAACAGATCGCCGGTGTGGGCGACCGAGGCCAGCATGCGCTGCATCAGCACATCGGCGTGGGCCGACACGGCCAGGTTGAAGCGGAAGAACTTGTGCTGCGCATCCAGGGCCACCGGGGc > 8:241226/1‑133 (MQ=255) aGGAAATGATCACGAACAGATCGCCGGTGTGGGCGACCGAGGCCAGCATGCGCTGCATCAGCACATCGGCGTGGGCCGACACGGCCAGGTTGAAGCGGAAGAACTTGTGCTGCGCATCCAGGGCCACCGGGGc > 8:247744/1‑133 (MQ=255) aaTGACCACGAACAGATCGCGGGGGGGGGCGACCGAGGCCAGCATGCGCTGCAGCAGCACAGCGGCGTGGGCCGACACGGCCAGGTTGAAGCGGAAGAACTTGTGCTGCGCATCCAGGGCCACCGGGGCTGAGgc < 8:137709/135‑1 (MQ=255) aTGATCACGAACAGATCGCCGGTGTGGGCGACCGAGGCCAGCATGCGCTGCATCAGCACATCGGCGTGGGCCGAAACGGCCAGGTTGAAGCGGAAGAACTTGTGCTGCGCATCCAGGGCCACCGGGGCTGAGgcg > 8:281892/1‑135 (MQ=255) cACGAACAGATCGCCGGTGTGGGCGACCGAGGCCAGCATGCGCTGCATCAGCACATCGGCGTGGGCCGCCACGGCCAGGTTGGAGCGGAAGAACGTGTGCTGCGCATCCAGGGCCACCGGGGCTGAGGCGCCGAg > 4:85003/1‑135 (MQ=255) cACGAACAGATCGCCGGTGTGGGCGACCGAGGCCAGCATGCGCTGCATCAGCACATCGGCGTGGGCCGACACGGCCAGGTTGCAGCGGAAGAACTTGTGCTGCGCATCCAGGGCCCCCGGGGCTGAGGCGCCGAg > 8:376546/1‑135 (MQ=255) cACGAACAGATCGCCGGTGTGGGCGACCGAGGCCAGCATGCGCTGCATCAGCACATCGGCGTGGGCCGACACGGCCAGGTTGAAGCGGAAGAACTTGTGCTGCGCATCCCGGGCCCCCGGGGCTGAGGCGCCGAg > 4:71155/1‑135 (MQ=255) cACGAACAGATCGCCGGTGTGGGCGACCGAGGCCAGCATGCGCTGCATCAGCACATCGGCGTGGGCCGACACGGCCAGGTTGAAGCGGAAGAACTTGTGCTGCGCATCCAGGGCCACCGGGGCTGCGGCGCCGAg > 4:199874/1‑135 (MQ=255) cACGAACAGATCGCCGGTGTGGGCGACCGAGGCCAGCATGCGCTGCATCAGCACATCGGCGTGGGCCGACACGGCCAGGTTGAAGCGGAAGAACTTGTGCTGCGCATCCAGGGCCACCGCGGCGGAGGCGCCGAg > 4:291716/1‑135 (MQ=255) cACGAACAGATCGCCGGTGTGGGCGACCGAGGCCAGCATGCGCTGCATCAGCACATCGGCGTGGGCCGACACGGCCACGTTGAAGCGGAAGAACTTGTGCTGCCCATCCACGGCCACCGCGGCTGAGGCGCCgcc > 3:200636/1‑133 (MQ=255) cACGAACAGATCGCCGGTGTGGGCGACCGAGGCCAGCATGCGCTGCATCAGCACATCGGCGTGGGCCGAAAAGGCCAGGTTGAAGCGGAAGAACTTGTGCTTAGCATCCAGGGCCACCGGGGCTGAGGCGCCGAg > 5:216465/1‑135 (MQ=255) cACGAACAGATCGCCGGTGTGGGCGACCGAGGCCAGCATGCGCTGCATCAGCACATCGGCGTGGGCCCACCCGGCCAGGTTGAAGCGGAAGCACTTGTGCTGCGCATCCAGGGCCCCCGGGGCCGCGGCGCCGAg > 2:159198/1‑135 (MQ=255) ccGAACAGATCGCCGGTGGGGGCGCCCGAGGCCCGCATGCGCTGCATCAGCACAGCGGCGTGGGCCGACACGGCCAGGTTGAAGCGGAAGAACTTGTGCTGCGCATCCAGGGCCACCGGGGCTGAGGCGCCGAgg < 3:232133/134‑1 (MQ=255) cagaccAGAGCCCCGGGGGGGCCGACCGAGGCCAGCAGGCGATGCAGCCGCACAGGGGGGGGGGCCGCCACGGCCAGGTTGAAGCGGAAGAACTTGTGCTGCGCATCCAGGGCCACCGGGGCTGAGGCGCCGAgg < 5:95451/130‑1 (MQ=255) aaCAGATCGCCGGTGTGGGCGACCGAGGCCAGCATGCGCTGCATCAGCACATCGGCGTGGGCCGACCCGGCCAGGGTGAAGCGGAAGCACTTGTGCTGCGCATACAGGGCCCCCCGGGCTGAGGCGCCGAGGcc > 8:401941/1‑134 (MQ=255) gCCGGTGTGGGCGACCGAGGCCAGCATGCGCTGCATCAGCACATCGGCGTGGGCCGCCACGGCCAGGTTGAAGCGGAAGAACTTGTGCTGCGCATCCAGGGCCCCCGGGGCTGAGGCGCCGAGGCCGAAGAAGTg > 3:400794/1‑135 (MQ=255) gCCGGTGTGGGCGACCGAGGCCAGCATGCGCTGCATCAGCACATCGGCGTGGGCCGACACGGCCAGGTTGAAGCGGAAGAACTTGTGCTGCGCATCCAGGGCCACCGGGGCTGAGGCGCCGAGGCCGAAGACGTg > 6:12426/1‑135 (MQ=255) gCCGGTGTGGGCGACCGAGGCCAGCATGCGCTGCATCAGCACATCGGCGTGGGCCGACACGGCCAGGGTGAAGCGGAAGAACTTGTGGTGCGCATCCAGGGCCACCGGGGCTGAGGCGCCGAGGCCGCAGAAGTg > 5:212234/1‑135 (MQ=255) gCCGGGGGGGGCGCCCGTGGCCAGCCGGCGCGGCATCAGCACCTCGGCGTGGGCCGACACGGCCAGGTTGAAGCGGAAGAACTTGTGCGGCGCATCCAGGGCCACCGGGGCTGAGGCGCCGAGGCCGAAGAAGTg < 6:140689/135‑1 (MQ=255) cGGTGTGGGCGACCGAGGCCAGCATGCGCTGCATCAGCACATCGGCGTGGGCCCGCACGGCCAGGGTGTAGCGGAAGAACATGTGCTGCGCATCCAGGGCCACCGGGGCGGAGGCGCCCAGGCCGAAGAAGTgg > 8:191542/1‑134 (MQ=255) gtgtGGGCGACCGAGGCCAGCATGGGCTGAATCAGCACATCGGCGGGGGCCGACACGGCCAGGTTGAAGCGGAAGAACTTGTGCTGCGCATCCAGGGCCACCGTGGCTGAGGCGCCGAGGCCGAAGAAGTGGATc < 8:429882/135‑1 (MQ=255) gtgtGGGCGACCGAGGCCAGCATGCGCTGCATCAGCACATCGGCGTGGGCCGGCACGGCCAGGTTGAAGCGGAAGAACTTGTGCTGCGCATCCAGGGCCACCGGGGCTGAGGCGCCGAGGCCGAAGAAGTGGATc > 7:21241/1‑135 (MQ=255) gtgGGCGACCGAGGCCAGCATGCGCTGCATCCGCACATCGGCGTGGGCCGACACGGCCAGGTTGAAGCGGAAGAACTTGTGCTGCGCATCCAGGGCCACCGGGGCTGAGGCGCCGAGGCCGAAGAAGTGGATCTg < 4:362226/135‑1 (MQ=255) gACCGAGGCCAGCATGCGCTGCATCAGCACATCGGCGTGGGCCGACACGGCCAGGTTGAAGCGGAAGAACTTGTTCTGCGCATCCAGGGCCACCCGGGCTGAGGCGCCGAGGCCGCAGAAGTGGCTCTGCCGGGc > 1:87924/1‑135 (MQ=255) gACCGAGGCCAGCATGCGCTGCATCAGCACATCGGCGTGGGCCGACACGGCCAGGGTGAAGCGGAAGAACTTGTGCTGCGCATACAGGGCCACCGGGGCTGAGGCGCCGAGGCCGAAGAAGTGGATATGCCggg > 7:429882/1‑134 (MQ=255) aCCGAGGCCAGCATGCGCTGCATCAGCACATCGGCGTGGGCCGACACGGCCAGGTTGAAGCGGAAGAACTTGTGCTGCGCATCCAGGGCCACCGGGGCTGAGGCGCCGAGGCCGAAGAAGTGGATCTGCCGGGcc < 4:41951/135‑1 (MQ=255) ccGCGGCAAGCATGGGCGGCATAAGCACATGGGCGGGGGCCGACACGGCCAGGTTGAAGCGGAAGAACTTGTGCTGCGCATCCAGGGCCACCGGGGCTGAGGCGCCGAGGCCGAAGAAGTGGATCTGCCGGGCCt < 8:402415/135‑1 (MQ=255) cGAGGCCAGCATGCGCTGCATCAGCACATCGGCGTGGGCCGCCACGGCCAGGTTGAAGCGGAAGAACTTGTGCTGCGCATACACGGCCCCCGGGGCTGAGGCGCCCAGGCCGAAGAAGTGGATCTGCCGGGccgg > 4:419065/1‑133 (MQ=255) ggCCAGAATGCGCTGCATCACCACTGCGGGGTGGGCCGACACGGCCAGGTTGAAGCGGAAGAACTTGTGCTGCGCATCCAGGGCCACCGGGGCTGAGGCGCCGAGGCCGAAGAAGTGGATCTGCCGGGCCTGGat < 8:278360/135‑1 (MQ=255) cagaGCATGCGCTGCAGCAGCCCAGCGGCGTGGGCCGACACGGCCAGGTTGAAGCGGAAGAACTTGTGCTGCGCATCCAGGGCCACCGGGGCTGAGGCGCCGAGGCCGAAGAAGTGGATCTGCCGGGCCTGGatc < 6:336934/132‑1 (MQ=255) gcgcTGCATCAGCACATCGGCGTGGGGCGACCCGGCCAGGTTGAAGCGGGAGAACTTGTGCTGCGCATCCAGGGCCCCCGGGGCTGCGGCGGCGCGGCCGCAGAAGTGGATCTGCCGGGCCTGGATCATCATGt > 2:418428/1‑134 (MQ=255) gcgcTGCATCAGCACATCGGCGTGGGCCGCCCCGGCCCGGTTGAAGCGGAAGAACTTGTGCTGCGCCTCCAGGGGCACCGGGGCTGAGGCGCCGCGGCCGCAGAAGTGGATCTGCCGGGCCTGGATCCTCATGTc > 6:385454/1‑135 (MQ=255) gcgcTGCATCAGCACATCGGCGTGGGCCGCCCCGGCCCGGGTGAAGCGGCAGAACTTGTGCTGCGCCTCCCGGGCCCCCCGGGGGGCGGCGCCGAGGCCGCAGAAGTGGGTCTGCCGGGCCGGGCTCGTCATGtg > 5:287027/1‑134 (MQ=255) gcgcTGCATCAGCACATCGGCGTGGGCCGCCCCGGCCAGGTTGAAGCGGAAGAACTTGTGCTGCGCATCCAGGGCCCCCGGGGCTGCGGCGCCGAGGCCGAAGAAGTGGATCTGCCGGGCCTGGATCATCATGt > 6:24980/1‑134 (MQ=255) gcgcTGCATCAGCACATCGGCGTGGGCCGCCACGGCCAGGTTGCAGCGGAAGAACTTGTGCTGCGCATCCCGGGCCCCCGGGGCTGAGGCGCCGAGGCCGCAGAAGTGGATCTGCCGGGCCGGGCTCATCATGTc > 8:61093/1‑135 (MQ=255) gcTGCATCCGCACCGCGGCGGGGGCCCCCACGGCCAGGTTGCAGCGGAAGAACTTGTGCTGCGCATCCAGGGCCACCGGGGCGGAGGCGCCGAGGCCGAAGAAGTGGATCTGCCGGGCCTGGATCATCATGTCCa < 7:261001/135‑1 (MQ=255) tGCACCAGCACAGCGGCGGGGGCCGACACGGCCAGGTTGAAGCGGAAGAACTTGTGCTGCGCATCCAGGGCCACCGGGGCTGAGGCGCCGAGGCCGAAGAAGTGGATCTGCCGGGCCTGGATCATCATGTCCACg < 4:164524/135‑1 (MQ=255) cAGCACATCGGCGTGGGCCGCCACGGCCAGGGTGAAGCGGAAGAACTTGTGCTGCGCATCCAGGGCCCCCGGGGCGGAGGCGCCGAGGCCGAAGAAGTGGATCTGCCGGGCCGGGATCATCATGTCCCCGgcctg > 5:336934/1‑132 (MQ=255) cAGCACATCGGCGTGGGCCGACACGGCCAGGTTGAAGCGGAAGAACTTGTGCTGCGCATCCAGGGCCACCGGGGCTGAGGCGCCGAGGCCGAAGAAGTGGATCTGCCGGGCCTGGATCATCATGTCCACGgcgc < 8:86308/134‑1 (MQ=255) cAGCACATCGGCGTGGGCCGACACGGCCAGGTTGAAGCGGAAGAACTTGTGCTGCGCATCCAGGGCCACCGGGGCTGAGGCGCCGAGGCCGAAGAAGTGGATCTGCCGGGCCTGGATCATCATGTCCACGgcgc > 7:86308/1‑134 (MQ=255) aTCGGCGTGGGGCGACACGGCCAGGTTGAAGCGGAAGAACTTGTGCTGCGCATCCAGGGCCACCGGGGCAGAGGCGCCCAGGCCGAAGAAGTGGATCTGCCGGGCCAGGATCATCATGTCCACGGCGCGGCTGAc > 8:311328/1‑135 (MQ=255) ggtggggCCTCCACGGCCAGGTTGAAGCGGAATATCTTGTGCTGCACATCCAGGGCCACCGGGGCTGAGGCGCCGAGGCCGAAGAAGTGGATCTGCCGGGCCTGGATCATCATGTCCACGGCGCGGCTGACctgc < 3:421419/131‑1 (MQ=255) gCGTGGGCCGACACGGCCAGGTTTAAGCGGAAGAACTTGTGCTGCGCATACAGGGCCAACGGGGCTGAGGCGCCGAGGCCGAAGAAGTGTATCTGCCGGGCCTGGATCATCATGTCCACGGCGCGGCTGACcttc > 6:325935/1‑133 (MQ=255) gCGTGGGCCGACACGGCCAGGTTGAAGCGGAAGAACTTGTGCTGCGCATCCAGGGCCACCGGGGCTGAGGCGCCGAGGCCGAAGAAGTGGATCTGCCGGGCCTGGATCATCATGTCCACGGCGCGGCTGACctgc < 7:58249/135‑1 (MQ=255) cGTGGGGCGACACGGCCAGGTTGAAGCGGAAGAACTTGTGCTGCGCATACAGGGCCACCGGGGCGGAGGCGCCCCGGCCGAAGAAGTGGATCTGCCGGGCCTGGATCATCATTTCCACGGCGCGGCGGGCcagct > 4:78590/1‑135 (MQ=255) cGTGGGCCGACCCGGCCAGGTTGCAGCGGAAGAACTTGTGCTGCGCATCCAGGGCCCCCGGGGCTGAGGCGCCGAGGCCGCAGAAGTGGATCTGCCGGGCCTGGATCATCATGTCCACGGCGCGGCTGACctgct > 8:37137/1‑135 (MQ=255) cGTGGGCCGACACGGCCAGGTTGAAGCGGAAGAACTTGTGCTGCGCATCCAGGGCCACCGGGGCGGAGGCGCCGAGGCCGAAGAAGTGGATCTGCCGGGCCTGGATCATCATGTCCACGGCGCGGCTGACctgct > 7:100440/1‑135 (MQ=255) gCCGACACGGCCAGGTTGAAGCGGAAGAACTTGTGCTGCGCATCCAGGGCCCCCGGGGCTGAGGCGCCGAGGCCGAAGAAGTGGATCTGCCGGGCCTGGCTCATCATGTCCACGGCGCGGCTGTCCGGCTGCggg > 5:85415/1‑135 (MQ=255) | GTTTTCACGTGCCAGGCGCGCCACTTCGACCAGTTCGCGGGTGCGCCCGGTGTAGGAAATGATCACGAACAGATCGCCGGTGTGGGCGACCGAGGCCAGCATGCGCTGCATCAGCACATCGGCGTGGGCCGACACGGCCAGGTTGAAGCGGAAGAACTTGTGCTGCGCATCCAGGGCCACCGGGGCTGAGGCGCCGAGGCCGAAGAAGTGGATCTGCCGGGCCTGGATCATCATGTCCACGGCGCGGCTGACCTGCTGCGGG > ACB122/1157852‑1158113 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |