Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | ACB122 | 5,264,429 | C→T | 5.9% | intergenic (‑123/‑54) | radA ← / → mscL | DNA repair protein RadA/Large‑conductance mechanosensitive channel |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | ACB122 | 5,264,429 | 0 | C | T | 5.9% | 222.6 / 3.1 | 68 | intergenic (‑123/‑54) | radA/mscL | DNA repair protein RadA/Large‑conductance mechanosensitive channel |
Reads supporting (aligned to +/- strand): ref base C (32/32); new base T (2/2); total (34/34) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.62e-01 |
GGCCTTGGCCATGGGTGAGGTCTCCTGGAAAAATTCGCCATGATAGCTGAGCAGGACGTGTCTCGAACGCCTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCTTACACTGCCTTAACCTTACCTTTTGTTACAAGGAACCAAACATGGGCATGCTCAACGAGTTCAAGGCTTTCGCAGTCAAAGGCAATGTCGTCGACATGGCGGTCGGTATCATCATCG > ACB122/5264295‑5264558 | ggccttggccATGGGTGAGGTCTCCTGGAAAAATTCGCCATGATAGCTGAGCAGGACGTGTCTCGAACGCCTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGc > 1:168266/1‑135 (MQ=255) ccttggccATGGGTGAGGTCTCCTGGAAAAATTCGCCATGATAGCTGAGCAGGACGTGTCTCGAACGCCTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGtt < 4:384120/136‑1 (MQ=255) ccttggccATGGGTGAGGTCTCCTGGAAAAATTCGCCATGATAGCTGAGCAGGACGTGTCTCGAACGCCTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGtt < 4:379382/136‑1 (MQ=255) cttggccATGGGTGAGGTCTCCTGGAAAAATTCGCCATGATAGCTGAGCAGGACGTGTCTCGAACGCCTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGtt < 5:389111/135‑1 (MQ=255) gccATGGGTGAGGTCTCCTGGAAAAATTCGCCATGATAGCTGAGCAGGACGTGTCTCGAACGCCTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGt < 8:353279/136‑1 (MQ=255) gccATGGGGGAGGTCTCCTGGAAAAAATCGCCATGATAGCTGAGCAGGACGTGTCTCGAACGCCTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGt < 8:154171/136‑1 (MQ=255) cATGGGTGAGGTCTCCTGGAAAAATTCGCCATGATAGCTGAGCAGGACGTGTCTCGAACGCCTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTg > 6:251953/1‑135 (MQ=255) cATGGGTGAGGTCTCCTGGAAAAATTCGCCATGATAGCTGAGCAGGACGTGTCTCGAACGCCTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTg > 6:142169/1‑135 (MQ=255) ggggAGGTCTCCTGGAAAAATTCGCCATGATAGCTGAGCAGGACGTGTCTCGAACGCCTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCtt < 1:389592/132‑1 (MQ=255) ggTGAGGTCTCCTGGAAAAATTCGCCATGATAGCTGAGCAGGACGTGTCTCGAACGCCTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCtt < 8:376901/135‑1 (MQ=255) ggTGAGGTCTCCTGGAAAAATTCGCCATGATAGCTGAGCAGGACGTGTCTCGAACGCCTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCtt < 7:81639/135‑1 (MQ=255) ggTGAGGTCTCCTGGAAAAATTCGCCATGATAGCTGAGCAGGACGTGTCTCGAACGCCTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCtt < 7:11285/135‑1 (MQ=255) ggTGAGGTCTCCTGGAAAAATTCGCCATGATAGCTGAGCAGGACGTGTCTCGAACGCCTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCtt < 4:339531/135‑1 (MQ=255) gTGAGGTCTCCTGGAAAAATTCGCCATGATAGCTGAGCAGGACGTGTCTCGAACGCCTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCtt < 5:43681/134‑1 (MQ=255) gTGAGGTCTCCTGGAAAAATTCGCCATGATAGCTGAGCAGGACGTGTCTCGAACGCCTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCtt < 5:13019/134‑1 (MQ=255) tGAGGTCTCCTGGAAAAATTCGCCATGATAGCTGAGCAGGACGTGTCTCGAACGCCTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGACGCGTTTAAGTGGCtttc > 1:382740/1‑133 (MQ=255) tGAGGTCTCCTGGAAAAATTAGCCATGATAGCTGAGCAGGACGTGTATAGAACGCCTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGACCTGAACACAACGCATGAAGCGTTTAAGTGGCTTaca > 7:327676/1‑136 (MQ=255) gTCTCCTGGAAAAATTCGCCATGATAGCTGAGCAGGACGTGTCTCGAACGCCTCGGGATGCGACAAAACTATTCGTTCTAACGGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCTTACACTg < 3:115644/135‑1 (MQ=255) tctcCTGGAAAAATTCGCCATGATAGCTGAGCAGGACGTGTCTCGAACGCCTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCtt < 6:124828/128‑1 (MQ=255) tctcCTGGAAAAATTCGCCATGATAGCTGAGCAGGACGTGTCTCGAACGCCTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCtt > 5:124828/1‑128 (MQ=255) tctcCTGGAAAAATTCGCCATGATAGCTGAGCAGGACGTGTCTCGAACGCCTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCTTACACTGc < 6:136269/135‑1 (MQ=255) tctcCTGGAAAAATTCGCCATGATAGCTGAGCAGGACGTGGCTCGAACGCCTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCTTACACTGc < 2:107885/135‑1 (MQ=255) ggAAAAATTCGCCATGATAGCTGAGCAGGACGTGTCTCGAACGCCTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCTTACACTGCCTTAac > 1:274929/1‑135 (MQ=255) gAAAAATTCGCCATGATAGCTGAGCAGGACGTGTCTCGAACGCCTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGACGCGTTTAAGTGGCTTACACTGCCTTAacc > 5:37453/1‑135 (MQ=255) gAAAAATTCGCCATGATAGCTGAGCAGGACGTGTCTCGAACGCCTCGGGATGCGACAAAACTATCCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCTTACACTGCCTTAacc > 1:119572/1‑135 (MQ=255) aaaTTCGCCATGATAGCTGAGCAGGACGTGTCTCGAACGCCTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCTTACACTGCCTTAaccttac < 3:26817/136‑1 (MQ=255) aaTTCGCCATGATAGCTGAGCAGGACGTGTCTCGAACGCCTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCTTACACTGCCTTAaccttac < 5:251953/135‑1 (MQ=255) tCGCCATGATAGCTGAGCAGGACGTGTCTCGAACGCCTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCTTACACTGCCTTAaccttacctt < 6:296111/135‑1 (MQ=255) cGCCATGATAGCTGAGCAGGACGTGTCTCGAACGCCTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCtt < 5:62796/113‑1 (MQ=255) cGCCATGATAGCTGAGCAGGACGTGTCTCGAACGCCTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCtt > 6:62796/1‑113 (MQ=255) aGCTGAGCAGGACGTGTCTCGAACGCCTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCTTACACTGCCTTAACCTTACCTTTTGTTACAAg < 2:226487/135‑1 (MQ=255) gACGTGTCTCGAACGCCTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTATAAGTGGCTTACACTGCCTTAACCTTACCTTTTGTTACAAGGAACCAAAc > 3:80227/1‑134 (MQ=255) gtgtCTCGAACGCCTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCTTACACTGCCTTAACCTTACCTTTTGTTACAAGGAACCAAACATgg > 1:283967/1‑135 (MQ=255) tccaaCGCCTAGGGATGCGACAAAACTATTAGTTCTAACTGCAGTCAGTAGCCCTCAACACAACGCATGAATCGTTTAAGAGGCTTACACAGCCATAACCTTACCTTTTGATACAATGAACCAAAAAAGGGAATg > 6:352336/4‑135 (MQ=255) tcGAACGCCTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCTTACACTGCCTTAACCTTACCTTTTGTTACAAGGAACCAAACATGGGCATGc > 3:17343/1‑136 (MQ=255) tcGAACGCCTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCTTACACTGCCTTAACCTTACCTTTTGTTACAAGGAACCAAACATGGGCATGc > 7:2571/1‑136 (MQ=255) tcGAACGCCTCGGGATGCGACAAAACTATTCGTACTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCtt > 4:322646/1‑86 (MQ=255) tcGAACGCCTCGGGATGCGACAAAACTATTCGTACTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCtt < 3:322646/86‑1 (MQ=255) tcGAACGCCTCGGGATGCGACAAAACAAATCGTTCTAACTGCACTCAGTAGCCCTGAACACAACGCATGAAGCCTTTAAGTTGCTTACACTGCCTTAACCATAACTTTTGTTACAAGGAACCAAACATGCGCATg > 1:75618/1‑135 (MQ=255) aaCGCCTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCTTACACTGCCTTAACCTTACCTTTTGTTACAAGGAACCAAACATGGGCATGCTc < 5:177765/135‑1 (MQ=255) aaCGCCGCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCTTACACTGCCTTAACCTTACCTTTTGTTACAAGGAACCAAACATGGGCATGCTCa > 7:224679/1‑136 (MQ=255) cGCCTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCTTACACTGCCTTAACCTTACCTTTTGTTACAAGGAACCAAACATGGGCATGCTCaa > 5:187471/1‑135 (MQ=255) cGCCTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCTTACACTGCCTTAACCTTACCTTTTGTTACAAGGAACCAAACATGGGCATGCTCAAc > 7:9812/1‑136 (MQ=255) cTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCTTACACTGCCTTAACCTTACCTTTTGTTACAAGGAACCAAACATGGGCATGCTCAACGAg > 7:70969/1‑136 (MQ=255) gggATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCTTACACTGCCTTAACCTTACCTTTTGTTACAAGGAACCAAACATGGGCATGCTCAACGAGtt > 7:359579/1‑135 (MQ=255) gggATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCTTACACTGCCTTAACCTTACCTTTTGTTACAAGGAACCAAACATGGGCATGCTCAACGAGt > 5:164075/1‑134 (MQ=255) gggATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCTTACACTGCCTTAACCTTACCTTTTGTTACAAGGAACCAAACATGGGACTGCTCAACGAGtt > 4:378916/1‑135 (MQ=255) aCAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCTTACACTGCCTTAACCTTACCTTTTGTTACAAGGAACCAAACATGGGCATGCTCAACGAGTTCAAGGCtt < 6:164075/135‑1 (MQ=255) cAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCTTACACTGCCTTAACCTTACCTTTTGTTACAAGGAACCAAACATGGGCATGCTCAACGAGTTCAAGGCttt > 2:156662/1‑135 (MQ=255) aaaaCTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCTTACACTGCCTTAACCTTACCTTTTGTTACAAGGAACCAAACATGGGCATGCTCAACGAGTTCAAGGCTTTCg > 8:98360/1‑136 (MQ=255) aCTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCTTACACTGCCTTAACCTTACCTTTTGTTACAAGGAACCAAACATGGGCATGCTCAACGAGTTCAAGGCTTTCGCa < 5:142169/135‑1 (MQ=255) gTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCTTACACTGCCTTAACCTTACCTTTTGTTACAAGGAACCAAACATGGGCATGCTCAACGAGTTCAAGGCTTTCGCAGTCAAAgg > 4:318960/1‑136 (MQ=255) gTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCTTACACTGCCTTAACCTTACCTTTTGTTACAAGGAACCAAACATGGGCATGCTCAACGAGTTCAAGGCTTTCGCAGTCAAAg < 4:290626/135‑1 (MQ=255) gTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCTTACACTGCCTTAACCTTACCTTTTGTTACAAGGAACCAAACATGGGCATGCTCAACGAGTTCAAGGCTTTCGCAGTCAAAg < 8:67243/135‑1 (MQ=255) ttCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCTTACACTGCCTTAACCTTACCTTTTGTTACAAGGAACCAAACATGGGCATGCTCAACGAGTTCAAGGCTTTCGCAGTCAAAg < 1:29765/134‑1 (MQ=255) agtAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCTTACACTGCCTTAACCTTACCTTTTGTTACAAGGAACCAAACATGGGCATGCTCACCGAGTTCAAGGCTTTCGCAGTCAACGGCAATGTCGTCGCCAt > 4:372882/1‑136 (MQ=255) cccTGAACACAACGCATGAAGCGTTTAAGTGGCTTACACTGCCTTAACCTTACCTTTTGTTACAAGGAACCAAACATGGGCATGCTCAACGAGTTCAAGGCTTTCGCAGTCAAAGGCAATGTCGTCGACATGGcg > 5:207562/1‑135 (MQ=255) cccTGAACACAACGCATGAAGCGTTTAAGTGGCTTACACTGCCTTAACCTTACCTTTTGTTACAAGGAACCAAACATGGGCATGCTCAACGAGTTCAAGGCTTTCGCAGTCAAAGGCAATGTCGTCGACATGGc < 2:168266/134‑1 (MQ=255) cccTGAACACAACGCATGAAGCGTTTAAGTGGCTTACACTGCCTTAACCTTACCTTTTGTTACAAGGAACCAAACATGGGCATGCTCAACGAGTTCAAGGCTTTCGCAGTCAAAGGCAATGTCGTCGACATGGc < 2:119572/134‑1 (MQ=255) cccTGAACACAACGCATGAAGCGTTTAAGTGGCTTACACTGCCTTAACCTTACCTTTTGTTACAAGGAACCAAACATGGGCATGCTCAACGAGTTCAAGGCGTTCGCAGTCAAAGGCAATGTCGTCGACATGGc < 6:35847/134‑1 (MQ=255) acaACGCATGAAGCGTTTAAGTGGCTTACACTGCCTTAACCTTACCTTTTGTTACAAGGAACCAAACATGGGCATGCTCAACGAGTTCAAGGCTTTCGCAGTCAAAGGCAATGTCGTCGACATGGCGGTCGGTat > 8:39044/1‑135 (MQ=255) acaACGCATGAAGCGTTTAAGTGGCTTACACTGCCTTAACCTTACCTTTTGTTACAAGGAACCAAACATGGGCATGCTCAACGAGTTCAAGGCTTTCGCAGTCAAAGGCAATGTCGTCGACATGGCGGTCGGTat > 5:261009/1‑135 (MQ=255) gCATGAAGTGTTTAAGTGGCTTACACTGCCTTAACCTTACCTTTTGTTACAAGGAACCAAACATGGGCATGCTc > 3:256470/1‑74 (MQ=255) gCATGAAGTGTTTAAGTGGCTTACACTGCCTTAACCTTACCTTTTGTTACAAGGAACCAAACATGGGCATGCTc > 3:251586/1‑74 (MQ=255) gCATGAAGTGTTTAAGTGGCTTACACTGCCTTAACCTTACCTTTTGTTACAAGGAACCAAACATGGGCATGCTc < 4:251586/74‑1 (MQ=255) gCATGAAGTGTTTAAGTGGCTTACACTGCCTTAACCTTACCTTTTGTTACAAGGAACCAAACATGGGCATGCTc < 4:256470/74‑1 (MQ=255) gCATGAAGCGTTTAAGTGGCTTACACTGCCTTAACCTTACCTTTTGTTACAAGGAACCAAACATGGGCCTGCTCAACGAGTTCAAGGCTTTCGCAGTCAAAGGCAATGTCGTCGACATGGCGGTCGGTatcatcat > 8:46378/1‑136 (MQ=255) gCATGAAGCGTTTAAGTGGCTTACACTGCCTTAACCTTACCTTTTGTTACAAGGAACCAAACATGGGCATGCTCAACGAGTTCAAGGCTTTCGCAGTCAAAGGCAATGTCGTCGACATGGCGGTCGGTatcatca > 1:290893/1‑135 (MQ=255) tGAAGCGTTTAACTGGCTTACACTGCCTTAACCTTACCTTTTTTTACAAGGAAACAAACATCGGCTTGCTCAACTAGTTCAAGGCTTTCGCAGTCAAAGGCAATGTCGTCGACATGGCGGTCGGTATCATCATCg < 1:201050/135‑1 (MQ=255) | GGCCTTGGCCATGGGTGAGGTCTCCTGGAAAAATTCGCCATGATAGCTGAGCAGGACGTGTCTCGAACGCCTCGGGATGCGACAAAACTATTCGTTCTAACTGCAGTCAGTAGCCCTGAACACAACGCATGAAGCGTTTAAGTGGCTTACACTGCCTTAACCTTACCTTTTGTTACAAGGAACCAAACATGGGCATGCTCAACGAGTTCAAGGCTTTCGCAGTCAAAGGCAATGTCGTCGACATGGCGGTCGGTATCATCATCG > ACB122/5264295‑5264558 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |