| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | ACB122 | = 2210779 | 55 (0.890) | 9 (0.150) | 8/258 | 4.6 | 14.2% | coding (345/720 nt) | CJ019_02095 | hypothetical protein |
| ? | ACB122 | = 4480292 | NA (NA) | intergenic (+31/+540) | CJ019_03744/recF_2 | IS66 family transposase ISPpu14/DNA replication and repair protein RecF | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTCATGGTGTCGATGCGTCGCTGGAAAGACTTGGCTGGGGTGATGAAGTCGTGCTTGGCGGATTTCGAGGTCTCTGGGAACAGTGGGCTCATGAAATCCACTACATGGTCGTCGCAGACAACCATCGCATGGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > ACB122/2210645‑2210779‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGTAAGCGTCCGCCCAACTCACCTTGCGTAAGTTAGGCAGGCACCCACTGATGTGGCAGCAGCTGCCCGATCTCACTGGCCCGCTGTGTTGGCAACCGAGTTAGCACATCTTTGAGATAGGCATACGGATCATGC < ACB122/4480292‑4480159 GTCATGGTGTCGATGCGTCGCTGGAAAGACTTGGCTGGGGTGATGAAGTCGTGCTTGGCGGATTTCGAGGTCTCTGGGAACAGTGGGCTCATGAAATCCACTACATGGTCGTCGCAGACAACCATCGCATGGAAAGT > 1:161634/1‑137 TCGAGGTCTCTGGGAACAGTGGGCTCATGAAATCCACTACATGGTCGTCGCAGACAACCATCGCATGGAAAGTAAGCGTCCGCCCAACTCACCTTGCGTAAGTTAGGCAGGCACCCACTGATGTGGCAGCAGCTGCC < 2:124961/137‑1 AAATCCACTACATGGTCGTCGCAGACAACCATCGCATGGAAAGTAAGCGTCCGCCCAACTCACCTTGCGTAAGTTAGGCAGGCACCCACTGATGTGGCAGCAGCTGCCCGATCTCACTGGCCCGCTGTGTTGGCAAC > 4:226343/1‑137 CGTCGCAGACAACCATCGCATGGAAAGTAAGCGTCCGCCCAACTCACCTTGCGTAAGTTAGGCAGGCACCCACTGATGTGGCAGCAGCTGCCCGATCTCACTGGC > 7:336164/1‑105 CGTCGCAGACAACCATCGCATGGAAAGTAAGCGTCCGCCCAACTCACCTTGCGTAAGTTAGGCAGGCACCCACTGATGTGGCAGCAGCTGCCCGATCTCACTGGC < 8:336164/105‑1 CGCATACAACCATCGCATGGAAAGTAAGCGTCCGCCCAACTCACCTTGCGTAAGTTAGGCAGGCACCCACTGATGTGGCAGCAGCTGCCCGATCTCACTGGCCCGCTGTGTTGGCAACCGAGTTAGCACATCTTTGA < 2:161634/137‑1 AACCATCGCATGGAAAGTAAGCGTCCGCCCAACTCACCTTGCGTAAGTTAGGCAGGCACCCACTGATGTGGCAGCAGCTGCCCGATCTCACTGGCCCGCTGTGTTGGCAACCGAGTTAGCACATCTTTGAGATAGGC < 3:226343/137‑1 CGCATGGAAAGTAAGCGTCCGCCCAACTCACCTTGCGTAAGTTAGGCAGGCACCCACTGATGTGGCAGCAGCTGCCCGATCTCACTGGCCCGCTGTGTTGGCAACCGAGTTAGCACATCTTTGAGATAGGCATACGG > 4:341353/1‑137 tAAGTAAGCGTCCGCCCAACTCACCTTGCGTAAGTTAGGCAGGCACCCACTGATGTGGCAGCAGCTGCCCGATCTCACTGGCCCGCTGTGTTGGCAACCGAGTTAGCACATCTTTGAGATAGGCATACGGATCATGC < 2:225462/136‑1 GTCATGGTGTCGATGCGTCGCTGGAAAGACTTGGCTGGGGTGATGAAGTCGTGCTTGGCGGATTTCGAGGTCTCTGGGAACAGTGGGCTCATGAAATCCACTACATGGTCGTCGCAGACAACCATCGCATGGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > ACB122/2210645‑2210779‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGTAAGCGTCCGCCCAACTCACCTTGCGTAAGTTAGGCAGGCACCCACTGATGTGGCAGCAGCTGCCCGATCTCACTGGCCCGCTGTGTTGGCAACCGAGTTAGCACATCTTTGAGATAGGCATACGGATCATGC < ACB122/4480292‑4480159 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |