Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | ACB122 | 5,083,473 | C→T | 6.3% | A112T (GCC→ACC) | aruG ← | Arginine N‑succinyltransferase subunit beta |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | ACB122 | 5,083,473 | 0 | C | T | 6.3% | 209.4 / 3.3 | 63 | A112T (GCC→ACC) | aruG | Arginine N‑succinyltransferase subunit beta |
Reads supporting (aligned to +/- strand): ref base C (32/27); new base T (2/2); total (34/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 |
CCGAACAGCTCGGGGAACTCGGCAATGAACAGCATGCGCGCGCGCGACAGCAGGCGGCCATTGAGGCCCGAGCGGTAGTCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGACAGTCAGGCCGACCCGGTAGTTGTACCAGGGCTCACGCAGGCCGACGGCGCCGGCGATGGCACTGATGCCCAC > ACB122/5083343‑5083599 | ccGAACAGCTCGGGGAACTCGGCAATGAACAGCATGCGCGCGCGCGACAGCAGGCGGCCATTGAGGCCCGAGCGGTAGTCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAg < 2:228963/134‑1 (MQ=255) acgcGGCAATGAACAGCATGCGCGCGCGCGACAGCAGGCGGCCATTGAGGCCCGAGCGGTAGTCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGAttt < 1:212276/132‑1 (MQ=255) aCTCGGCAATGAACAGCATGCGCGCGCGCGACAGCAGGCGGCCATTGAGGCCCGAGCGGTAGTCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGAttt < 2:28443/135‑1 (MQ=255) gCAATGAACAGCATGCGCGCGCGCGACAGCAGGCGGCCATTGAGGCCCGAGCGGTAGTCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTcgcg < 5:171073/134‑1 (MQ=255) gCAATGAACAGCATGCGCGCGCGCGACAGCAGGCGGCCATTGAGGCCCGAGCGGTAGTCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTcgcg > 4:190816/1‑134 (MQ=255) gCAATGAACAGCATGCGCGCGCGCGACAGCAGGCGGCCATTGAGGCCCGAGCGGTAGTCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTcgcg > 3:43856/1‑134 (MQ=255) gCAATGAACAGCATGCGCGCGCGCGACAGCAGGCGGCCATTGAGGCCCGAGCGGTAGTCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCgg < 4:46618/135‑1 (MQ=255) tGAACAGCATGCGCGCGCGCGACAGCAGGCGGCCATTGAGGCCCGAGCGGTAGTCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCgg > 8:375401/1‑131 (MQ=255) aGCATGCGCGCGCGCGACAGCAGGCGGCCATTGAGGCCCGAGCGGTAGTCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTc < 2:265912/135‑1 (MQ=255) aTGCGCGCGCGCGACAGCAGGCGGCCATTGAGGCCCGAGCGGTAGTCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGCAACAGCGTCGGGAATTCGCGGTAGATCTTCAGc > 6:260503/1‑135 (MQ=255) gcgcgcgcgcGACAGCAGGCGGCCATTGAGGCCCGAGCGGTAGTCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTcc > 8:228196/1‑136 (MQ=255) gcgcgcgcgcGACAGCAGGCGGCCATTGAGGCCCGAGCGGTAGTCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTc > 4:54243/1‑135 (MQ=255) gcgcgcgcgcGACAGCAGGCGGCCATTGAGGCCCGAGCGGTAGTCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTc > 5:149480/1‑135 (MQ=255) gcgcgcgcgcGACAGCAGGCGGCCATTGAGGCCCGAGCGGTAGTCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTc > 5:156357/1‑135 (MQ=255) gcgcgcgcgcGACAGCAGGCGGCCAGTGAGGCCCGAGCGGTAGTCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGACCAGCGTCGGGATTTCGCGGTAGATCTTCAGCTc > 5:99025/1‑135 (MQ=255) gcgACAGCAGGCGGCCATTGAGGCCCGAGCGGTAGTCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGTTCGTTGGCCAGGAACAGCGTCGGGAGTTCGCGGTAGATCTTCAGCTCCTGCGAgg > 4:22356/1‑135 (MQ=255) cagGCGGCCATTGAGGCCCGAGCGGTAGTCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGAc < 4:53780/135‑1 (MQ=255) cggcCATTGAGGCCCGAGCGGTAGTCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCAGCGAGGCGCTGACAGTCa < 7:174745/136‑1 (MQ=255) ggcCATTGAGGCCCGAGCGGTAGTCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGACAGTCa < 2:62192/135‑1 (MQ=255) ggcCATTGAGGCCCGAGCGGTAGTCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGACAGTCAg < 8:140173/136‑1 (MQ=255) aGGCCCGAGCGGTAGTCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGACAGTCAGGc < 8:249099/130‑1 (MQ=255) aGGCCCGAGCGGTAGTCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGACAGTCAGGc > 7:249099/1‑130 (MQ=255) ggCGCGAGCGGTAGTCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGGCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCGGACAGTCAGGCCGAcc < 4:327617/134‑1 (MQ=255) cccGAGCGGTAGTCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGACAGTCAGGCCGACCCgg < 3:206654/135‑1 (MQ=255) cGAGCGGTAGTCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAg < 7:220485/72‑1 (MQ=255) cGAGCGGTAGTCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAg > 8:220485/1‑72 (MQ=255) aGCGGTAGTCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCg > 7:293424/1‑105 (MQ=255) aGCGGTAGTCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCg < 8:293424/105‑1 (MQ=255) ggTAGTCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGGCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGACAGTCAGGCCGACCCGGTAGTTGt < 3:269198/135‑1 (MQ=255) tCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGTCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGACAGTCAGGCCGACCCGGTAGTTGTACCAg > 2:307870/1‑135 (MQ=255) tCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGTCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGACAGTCAGGCCGACCCGGTAGTTGTACCAg > 2:313148/1‑135 (MQ=255) tCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGACAGTCa > 8:186565/1‑112 (MQ=255) tCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGACAGTCa < 7:186565/112‑1 (MQ=255) tCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGACAGTCAGGCCGACCCGGTAGTTGTACCa < 6:180010/134‑1 (MQ=255) tCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGACAGTCAGGCCGACCCGGTAGTTGTACCAg > 5:211963/1‑135 (MQ=255) tCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGACAGTCAGGCCGACCCGGTAGTTGTACCAg > 1:183726/1‑135 (MQ=255) tCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGACAGTCAGGCCGACCCGGGAGTTGTACCAg > 4:76791/1‑135 (MQ=255) gcAGGAACAGCGAGCTCAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGACAGTCCGGCCGCCCCGGTAGTTGTACCAGGGCTCAc > 2:116498/1‑135 (MQ=255) gcAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGACAGTCAGGCCGACCCGGTAGTTGTACCAGGGCTc < 3:108910/133‑1 (MQ=255) aGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGACAGTCAGGCCGACCCGGTAGTTGTACCAGGGCTCAc > 2:212453/1‑133 (MQ=255) aaCAGCGAGCACAGCTCTGAGTTGCCGGGCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGACAGTCAGGCCGACCCGGTAGTTGTACCAGGGCTCACGCAGGc < 7:362783/136‑1 (MQ=255) aCAGCGAGCACAGCTCTGAGGTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGACAGTCAGGCCGACCCGGTAGTTGTACCAGGGCTCACGCAGGc < 4:274830/135‑1 (MQ=255) aGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGACAGTCAGGCCGACCCGGTAGTTGTACCAGGGCTCCCGCAGGCCGCCgg > 5:178605/1‑135 (MQ=255) aGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGACAGTCAGGCCGACCCGGTAGTTGTACCAGGGCTCACGCAGGCCGACgg > 1:87885/1‑135 (MQ=255) gCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGACAGTCAGGCCGCCCCGCTAGTTGTACCAGGGCTCACGCAGGCCGCCGgc > 5:351932/1‑135 (MQ=255) gCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGACAGTCAGGCCGACCCGGTAGTTGTACCAGGGCTCACGCAGGCCGACGGCGCCgg < 3:80752/135‑1 (MQ=255) tGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGACAGTCAGGCCGACCCGGTAGTTGTACCCGGGCTCCCGCAGGCCGACGGCCCCGGCgct > 1:373116/1‑133 (MQ=255) tGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGACAGTCAGGCCGACCCGGTAGTTGTACCAGGGCTc < 3:227364/111‑1 (MQ=255) tGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGACAGTCAGGCCGACCCGGTAGTTGTACCAGGGCTc < 3:231980/111‑1 (MQ=255) tGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGACAGTCAGGCCGACCCGGTAGTTGTACCAGGGCTc > 4:227364/1‑111 (MQ=255) tGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGACAGTCAGGCCGACCCGGTAGTTGTACCAGGGCTc > 4:231980/1‑111 (MQ=255) ttGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGAGTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCGGACAGTCAGGCCGACCCGGTAGTTGTACCAGGGCGCACGCAGGCCGACGGCGCCGGCGATGGCa < 3:193839/135‑1 (MQ=255) tGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGCGGCGCTGACAGTCAGGCCGCCCCGGTAGTTGTACCAGGGCTCACGCAGGCCGACGGCGCCGGCGATGGCACt > 7:90716/1‑136 (MQ=255) tGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGACAGTCAGGCCGACCCGGTAGTTGTACCAGGGCTCACGCAGGCCGACGGCGCCGGCGATGacac > 2:74461/1‑135 (MQ=255) tGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGACAGTCAGGCCGACCCGGTAGTTGTACCAGGGCTCACGCAGGCCGACGGCGCCGGCGATGGCAc > 2:25288/1‑135 (MQ=255) ggTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGACAGTCAGGCCGACCCGGTAGTTGTACCAGGGCTCACGCAGGCCGACGGCGCCGGCGATGGCACTGAt < 4:57206/135‑1 (MQ=255) gTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTcc > 3:20031/1‑54 (MQ=255) gTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTcc < 4:20031/54‑1 (MQ=255) gTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGACAGTCAGGCCGACCCGGTAGTTGTACCAGGGCTCACGCAGGCCGACGGCGCCGGCGATGGCActgctg > 2:199773/1‑135 (MQ=255) gTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGACAGTCAGGCCGACCCGGTAGTTGTACCAGGGCTCACGCAGGCCGACGGCGCCGGCGATGGCACTGATg > 1:271974/1‑135 (MQ=255) gTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGACAGTCAGGCCGACCCGGTAGTTGTACCAGGGCTCACGCAGGCCGACGGCGCCGGCGATGGCACTGATg > 1:62667/1‑135 (MQ=255) gTCGTTGGTCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGACAGTCAGGCCGACCCGGTAGTTGTACCAGGGCTCACGCAGGCCGACGGCGCCGGCGATGGCACTGATGCccac < 1:307870/135‑1 (MQ=255) gTCGTTGGTCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGACAGTCAGGCCGACCCGGTAGTTGTACCAGGGCTCACGCAGGCCGACGGCGCCGGCGATGGCACTGATGCccac < 1:313148/135‑1 (MQ=255) | CCGAACAGCTCGGGGAACTCGGCAATGAACAGCATGCGCGCGCGCGACAGCAGGCGGCCATTGAGGCCCGAGCGGTAGTCGCTGCGCAGGAACAGCGAGCACAGCTCTGAGTTGCCGGTCAGGTCGTTGGCCAGGAACAGCGTCGGGATTTCGCGGTAGATCTTCAGCTCCTGCGAGGCGCTGACAGTCAGGCCGACCCGGTAGTTGTACCAGGGCTCACGCAGGCCGACGGCGCCGGCGATGGCACTGATGCCCAC > ACB122/5083343‑5083599 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |