New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	ACB143	= 1837193	0 (0.000)	39 (0.710)	27/254	0.6	72.9%	coding (657/2754 nt)	barA	Signal transduction histidine‑protein kinaseBarA
	?	ACB143	2170759 =	29 (0.530)					intergenic (‑774/‑63)	arsR1/CJ019_02060	Arsenic resistance transcriptional regulatorArsR1/IS1182 family transposase ISPpu16

CTGGCGCACGTCTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  ACB143/1837070‑1837193 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTACGTC  >  ACB143/2170759‑2170893                                                                                                                                                                                                                                                                     CTGGCGCACGTCTTCGGTGGCCTGGGCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTG                                                                                                                              <  8:260721/135‑1    GCGCACGTCTTCGGAGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAA                                                                                                                          >  7:283441/1‑136     CGCACGTCTTCGGTGGACGGGTCGATGCTGGTTTGCAGTTCTTCTTGGGCATTATGCAGGGTTTCGGACATGCGGGTGATGCCGTGGGCCAGTTCTTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAAC                                                                                                                         <  2:146078/136‑1         CGTCTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTGTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCC                                                                                                                     <  6:326282/136‑1          GTCTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCG                                                                                                                    <  6:323125/136‑1            CTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCG                                                                                                                  >  2:347165/1‑136            CTTCGGGGGCCTGGTCGTTGCTGTGGTGCAGTTCTTCGTGGGCATTCTGCATGGTTTCGTCCATGCGGTTGATGCCGTGGGCCTGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCG                                                                                                                  <  2:121676/136‑1                         GTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTT                                                                                                     >  7:188780/1‑136                         GTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTT                                                                                                     <  2:240264/136‑1                         GTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTGCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTGACC                                                                                                       <  5:288871/134‑1                                           TTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTG                                                                                   >  1:162950/1‑136                                           TTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTG                                                                                   >  7:39377/1‑136                                             CTTCGTGGTCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCTGTTCGTCCAGCTCTTGGCTGCCCTTGGTCCAGACTGTGTGAAAACGCCCGCGGTTGGCTAACCTTCTGGTCGTCGTGACCGTGG                                                                                  <  7:151552/135‑1                                             CTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGG                                                                                  <  5:177480/135‑1                                              TTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGG                                                                                 >  5:245041/1‑135                                              TTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGG                                                                                 >  4:328627/1‑135                                                CGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGA                                                                               >  3:117260/1‑135                                                             CAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAG                                                                    <  1:347165/133‑1                                                                 gtaTCGGCCTTGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGGCGTCGTGACGGTGGGGACAATCATGAAGCGATTCA                                                             <  8:56465/133‑1                                                                 GTTTCGGCCATGCGGTGGATGCCGTGGGCCTGTTCGTCCATCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCA                                                             <  8:148995/136‑1                                                                 GTTGCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCATCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAAACTTCTGGTCGTCGTGACCGTGGGTACAATCATGAAGCGATTCA                                                             <  8:104580/136‑1                                                                        CCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCTATTCCTCGAAGG                                                      >  6:106122/1‑136                                                                        CCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTCTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTCGGGACAATCATGAAGCGATTCATCGAAGG                                                      >  8:93908/1‑136                                                                               GTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGCCCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCT                                               >  1:317918/1‑136                                                                               GTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCT                                               >  8:150150/1‑136                                                                                  GATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTTAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCG                                             <  5:48291/135‑1                                                                                  GATGCCGGGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCG                                             <  7:115600/135‑1                                                                                   ATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAA                                           <  1:203120/136‑1                                                                                   ATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAA                                           <  8:95933/136‑1                                                                                          GGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGT                                    >  1:122934/1‑136                                                                                            GCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTA                                  <  6:337234/136‑1                                                                                            GCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTA                                  <  2:37770/136‑1                                                                                            GCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGAATCATCGAAGGTGAGGCTCGACCGCAGGTTA                                  >  8:145148/1‑136                                                                                             CCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCTTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTA                                  >  3:314808/1‑135                                                                                             CCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTA                                  >  6:134305/1‑135                                                                                             CCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCGTCTGGTCGTCGTGACAGGGGGGACCATCATGAAGCGATTCATCGACGGTGCGGCTCGAACGCACGTTA                                  >  4:57509/1‑135                                                                                                             ATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGC                 <  7:105853/136‑1                                                                                                             ATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGC                 >  2:141674/1‑136                                                                                                                       ATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGACGGAGTGCCTGGACGAC        >  4:346661/1‑135                                                                                                                          GTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTACG    <  1:46381/136‑1                                                                                                                            CCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTACGTC  <  3:75130/136‑1                                                                                                                            CCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTACGT   >  1:223832/1‑135                                                                                                                                                                                                                                                                     CTGGCGCACGTCTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  ACB143/1837070‑1837193 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTACGTC  >  ACB143/2170759‑2170893

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.