| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | ACB143 | = 198592 | 49 (0.820) | 3 (0.050) | 3/242 | 6.6 | 5.7% | coding (13451/28449 nt) | CJ019_00185 | hypothetical protein |
| ? | ACB143 | = 2457733 | 54 (0.970) | coding (942/1350 nt) | cusS_2 | Sensor histidine kinase CusS | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > ACB143/198450‑198592‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtggatgcGCTGCTGGAGTACTACGCGCCTCTGGCAGAAGACAGCGACGTGCAGATGCTGCGCGAGGGTGAAGCGGTGCTGCACGGCGACCAGCATATGCTGCGCCGGGCGCTGTCCAACCTGCTGGACAACGCCATGCGTTTT < ACB143/2457733‑2457598 CTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGT < 1:159817/137‑1CTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGT < 5:301010/137‑1 GTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCCCGCTGCGCAGGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCATGGGTATCAACTCGGCGGTGGATGC > 7:214233/1‑137 GTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGATGC > 7:186307/1‑137 AACGATGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGATGCGCTGCTGGAGTACTACGCGC > 7:83762/1‑67 AACGATGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGATGCGCTGCTGGAGTACTACGCGC < 8:83762/67‑1 CGGTGGATGCGCTGCTGGAGTACTACGCGCCTCTGGCAGAAGACAGCGACGTGCAGATGCTGCGCGAGGGTGAAGCGGTGCTGCACGGCGACCAGCATATGCTGCGCCGGGCGCTGTCCAACCTGCTGGACAACGCC < 6:174981/137‑1 GGTGGATGCGCTGCTGGAGTACTACGCGCCTCTGGCAGAAGACAGCGACGTGCAGATGCTGCGCGAGGGTGAAGCGGTGCTGCACGGCGACCAGCATATGCTGCGCCGGGCGCTGTCCAACCTGCTGGACAACGCCA > 8:222349/1‑137 ATGCGCTGCTGGAGTACTACGCGCCTCTGGCAGAAGACAGCGACGTGCAGATGCTGCGCGAGGGTGAAGCGGTGCTGCACGGCGACCAG > 5:33809/1‑89 ATGCGCTGCTGGAGTACAACGCGCCTCTGGCAGAAGACAGCGACGTGCAGATGCTGCGCGAGGGTGAAGCGGTGCTGCACGGCGACCAG < 6:33809/89‑1 CGCTGCTGGAGTACTACGCGCCTCTGGCAGAAGACAGCGACGTGCAGATGCTGCGCGAGGGTGAAGCGGTGCTGCACGGCGACCAGCATATGCTGCGCCGGGCGCTGTCCAACCTGCTGGACAACGCCATGCGTTTT < 1:176570/137‑1 CTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > ACB143/198450‑198592‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtggatgcGCTGCTGGAGTACTACGCGCCTCTGGCAGAAGACAGCGACGTGCAGATGCTGCGCGAGGGTGAAGCGGTGCTGCACGGCGACCAGCATATGCTGCGCCGGGCGCTGTCCAACCTGCTGGACAACGCCATGCGTTTT < ACB143/2457733‑2457598 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |