New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	ACB143	= 5386378	61 (1.020)	3 (0.050)	3/258	7.0	4.9%	intergenic (‑387/+1264)	CJ019_05070/nptII	hypothetical protein/neomycin phosphotransferase
	?	ACB143	5395906 =	57 (0.960)					intergenic (+2/‑9)	CJ019_05073/CJ019_05074	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGCCATCAGCGCATAGGAAGGCCCGACGACCGGGCCTGAGAGCCCCCCGACGATAGTGGCAGCATGCCTCTAGCTATTTTGTTAAATTCGGCAACACGCCATAGGGACATAGCCAGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  ACB143/5386260‑5386378 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gAAATTCGTTATGCGCCTGAAGTTGCTCTCAATCAGCCACTACAAAAACCTTAAGAATTTCAACTTAGAGTTTGATGGTGAAAGCTTCGTCGATCTATTTGTCGGTAAAAACGGAAGTGGCAAATCAAATCTTTTTG  >  ACB143/5395906‑5396041                                                                                                                                                                                                                                                                 TGCCATCAGCGAATAGGAAGGCCCGACGACCGGGCCTGAGAGCCCCCCGACGATAGTGGCAGCATGCCTCTAGCTATTTTGTTAAATTCGGCAACACGCCATAGGGACATAGCCAGCAGAAATTCGTTATGCGCCTG                                                                                                                        <  6:10106/137‑1                                                 GACGATAGTGGCAGCATGCCTCTAGCTATTTTGTTAAATTCGGCAACACGCCATAGGGACATAGCCAGCAG                                                                                                                                          <  3:139358/71‑1                                                 GACGATAGTGGCAGCATGCCTCTAGCTATTTTGTTAAATTCGGCAACACGCCATAGGGACATAGCCAGCAG                                                                                                                                          >  4:139358/1‑71                                                            CAGCATTCATCTAGCTATTATGTTAAATTCGGCAACACGCCATAGTGACTTAGCCAGCAGAAATTCGTTATGCGCCTGAAGTTGCTCTCAATCAGCCACTACAAAAACCTTAAGAATTTCAACTTAGAGTTTGATGG                                                             <  7:320267/137‑1                                                                          CTATTTTGTTAAATTCGGCAACACGCCATAGGGACATAGCCAGCAGAAATTCGTTATGCGCCTGAAGTTGCTCTCAATCAGCCACTACAAAAACCTTAAGAATTTCAACTTAGAGTTTGATGGTGAAAGCTTCGTCG                                               >  6:198213/1‑137                                                                                                                       GAAATTCGTTATGCGCCTGAAGTTGCTCTCAATCAGCCACTACAAAAACCTTAAGAATTTCAACTTAGAGTTTGATGGTGAAAGCTTCGTCGATCTATTTGTCGGTAAAAACGGAAGTGGCAAATCAAATCTTTTTG  >  3:243932/1‑137                                                                                                                                                                                                                                                                 TGCCATCAGCGCATAGGAAGGCCCGACGACCGGGCCTGAGAGCCCCCCGACGATAGTGGCAGCATGCCTCTAGCTATTTTGTTAAATTCGGCAACACGCCATAGGGACATAGCCAGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  ACB143/5386260‑5386378 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gAAATTCGTTATGCGCCTGAAGTTGCTCTCAATCAGCCACTACAAAAACCTTAAGAATTTCAACTTAGAGTTTGATGGTGAAAGCTTCGTCGATCTATTTGTCGGTAAAAACGGAAGTGGCAAATCAAATCTTTTTG  >  ACB143/5395906‑5396041

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.