Predicted mutation
evidence seq id position mutation freq annotation gene description
RA ACB143 4,720,096 T→C 8.9% K58R (AAG→AGG) ‡ sucD ← Succinate‑‑CoA ligase [ADP‑forming] subunitalpha

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*ACB1434,720,0960TC 8.9% 136.1 / 4.4 45K58R (AAG→AGG) ‡sucDSuccinate‑‑CoA ligase [ADP‑forming] subunitalpha
Reads supporting (aligned to +/- strand):  ref base T (18/23);  new base C (2/2);  total (20/25)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.33e-01

AGGGTAGGAATGCCTTCGGTGATGCAGACGATCAGCTTGATGCCGCCAAAGGCAGCTTCCAGGATCGAGTCTTTGCAGAACGGAGCCGGTACGTAGATGACCGAAGCGTCAGCGCCGGTCGCTTCCACGGCTTCCTTGACGGTGTTGAACACCGGCAGGCCCAGGTGGGTGGTGCCACCCTTGCCTGGGGTTACGCCGCCGACCATCTTGGTGCCGTAGGCAATGGCCTGTTCGGAGTGGAAAGTACCCTGCGAGCCGGTGAAG  >  ACB143/4719961‑4720224
                                                                                                                                       |                                                                                                                                
aGGGTAGGAATGCCTTCGGTGATGCAGACGAGCAGCTTGATGCCGCCAAAGGCAGCTTCCAGGATCGAGACTTTGCAGAACGGAGCCGGTACGTAGATGACCGAAGCGTCAGCGCCGGTCGCTTCCACGGCTTCCt                                                                                                                                  <  2:222934/136‑1 (MQ=255)
  ggTAGGAATGCCTTCGGTGATGCAGACGATCAGCTTGATGCCGCCAAAGGCAGCTTCCAGGATCGAGTCTTTGCAGAACGGAGCCGGTACGTATATGACCGAAGCGTCAGCGCCGGTCGCTTCCACGGCTTCCTTg                                                                                                                                <  8:224102/136‑1 (MQ=255)
          tGCCTTCGGTGATGCAGACGATCAGCTTGATGCCGCCAAAGGCAGCTTCCAGGATCGAGTCTTTGCAGAACGGAGCCGGTACGTAGATGACCGAAGCGTCAGCGCCGGTCGCTTCCACGGCTTCCTTGACGGTGtt                                                                                                                        >  8:5040/1‑136 (MQ=255)
          tGCCTTCGGTGATGCAGACGATCAGCTTGATGCCGCCAAAGGCAGCTTCCAGGATCGAGTCTTTGCAGAACGGAGCCGGTACGTAGATGACCGAAGCGTCAGCGCCGGTCGCTTCCACGGCTTCCTTGACGGTGtt                                                                                                                        >  5:164356/1‑136 (MQ=255)
          tGCCTTCAGTGATGCAGACGATCAGCTTGATGCCGCCAAAGGCAGCTTCCAGGATCGAGTCTTTGCAGAACGGAGCCGGTACGTAGATGACCGAAGCGTCAGCGCCGGTCGCTTCCACGGCTTCCTTGACGGTGtt                                                                                                                        >  8:258403/1‑136 (MQ=255)
               tCGGTGATGCAGACTATCAGCTTGATGCCGCCAAAGGCAGCTTCCAGGATCGAGTCTTTGCAGAACGGAGCCGGTACGTAGATGACCGAAGCGTCAGCGCAGGTCGCTTCCACGGCTTACTTGACGGTGTTGcaca                                                                                                                   >  6:218537/1‑136 (MQ=255)
               tCGGTGATGCAGACGATCAGCTTGATGCCGCCAAAGGCAGCTTCCAGGATCGAGTCTTTGCAGAACGGAGCCGGTACGTAGATGACCGAAGCGTCAGCGCCGGTCGCTTCCACGGCTTCCTTGACGGTGTTGAaca                                                                                                                   >  2:296702/1‑136 (MQ=255)
               tCGGTGATGCAGACGATCAGCTTGATGCCGCCAAAGGCAGCTTCCAGGATCGAGTCTTTGCAGAACGGAGCCGGTACGTAGATGACCGAAGCGTCAGCGCCGGTCGCTTCCACGGCTTCCTTGACGGTGTTGAaca                                                                                                                   >  4:175299/1‑136 (MQ=255)
                 ggTGATGCAGACGATCAGCTTGATGCCGCCAAAGGCAGCTTCCAGGATCGAGTCTTTGCAGAACGGAGCCGGTACGTAGATGACCGAAGCGTCAGCGCCGGTCGCTTCCACGGCTTCCTTGACGGTGTTGAACAcc                                                                                                                 <  3:175299/136‑1 (MQ=255)
                         aGACGATCAGCTTGATGCCGCCAAAGGCAGCTTCCAGGATCGAGTCTTTGCAGAACGGAGCCGGTACGTAGATGACCGAAGCGTCAGCGCCGGTCGCTTACACGGCTTCCTTGACGGTGTTGAACACCGGCAGGcc                                                                                                         >  6:18499/1‑136 (MQ=255)
                              aTCAGCTTGATGCCGCCAAAGGCAGCTTCCAGGATCGAGTCTTTGCAGAACGGAGCCGGTACGTAGATGACCGAAGCGTCAGCGCCGGTCGCTTCCACGGCTTCCTTGACGGTGTTGAACACCGGCAGGCCCAggt                                                                                                    >  1:251744/1‑136 (MQ=255)
                              aTCAGCTTGATGCCGCCAAAGGCAGCTTCCAGGATCGAGTCTTTGCAGAACGGAGCCGGTACGTAGATGACCGAAGCGTCAGCGCCGGTCGCTTCCACGGCTTCCTTGACGGTGTTGAACACCGGCAGGCCCAggt                                                                                                    <  5:143777/136‑1 (MQ=255)
                               tCAGCTTTATGCCGCCAAAGGCAGCTTCCAGGATCGAGTCTTTGCAGAACGGAGCCGGTACGTAGATGACCGAAGCGTCAGCGCCGGTCGCTTCCACGGCTTCCTTGACGGTGTTGAACACCGGCAGGCCCAggt                                                                                                    <  6:273942/135‑1 (MQ=255)
                               tCAGCTTGATGCCGCCAAAGGCAGCTTCCAGGATCGAGTCTTTGCAGAACGGAGCCGGTACGTAGATGACCGAAGCGTCAGCGCCGGTCGCTTCCACGGCTTCCTTGACGGTGTTGAACACCGGCAGGCCCAggt                                                                                                    <  6:164356/135‑1 (MQ=255)
                               tCAGCTTGATGCCGCCAAAGGCAGCTTCCAGGATCGAGTCTTTGCAGAACGGAGCCGGTACGTAGATGACCGAAGCGTCAGCGCCGGTCGCTTCCACGGCTTCCTTGACGGTGTTGAACACCGGCAGGCCCAggt                                                                                                    <  8:52981/135‑1 (MQ=255)
                                         gccgccAAAGGCAGCTTCCAGGATCGCGGCTTTGCAGAACGGAGCCGGTACGTAGATGACCGAAGCGTCAGCGCCGGTCGCTTCCACGGCTTCCTTGACGGTGTTGAACACCGGCAGGCCCAGGTGGGTGGTGCCa                                                                                         <  4:182125/136‑1 (MQ=255)
                                              cAAAGGCAGCTTCCAGGATCGAGTCTTTGCAGAACGGAGCCGGTACGTAGATGACCGAAGCGTCAGCGCCGGTCGCTTCCACGGCTTCCTTGACGGTGTTGAACACCGGCAGGCCCAGGTGGGTGGTGCCACCCtt                                                                                    <  8:17823/136‑1 (MQ=255)
                                                aaGGCAGCTTCCAGGATCGAGTCTTTGCAGAACGGAGCCGGTACGTAGATGACCGAAGCGTCAGCGCCGGTCGCTTCCACGGCTTCCTTGACGGTGTTGAACACCGGCAGGCCCAGGTGGGTGGTGCCACCCTTGc                                                                                  >  4:242620/1‑136 (MQ=255)
                                                                tCGAGTCTTTGCATAACGGAGCCGGTACGTAGATGACCGAAGCGTCAGCGCCGGTCGCTTCCACGGCTTCCTTGACGGTGTTGAACACCGGCAGGCCCAGGTGGGTGGTGCCACCCTTGCCTGGGGTTACgccgcc                                                                  <  3:230370/136‑1 (MQ=255)
                                                                      cTTTGCAGAACGGAGCCGGTACGTAGATGACCGAAGCGTCAGCGCCGGTCGCTTCCACGGCTTCCTTGACGGTGTTGAACACCGGCAGGCCCAGGTGGGTGGTGCCACCCTTGCCTGGGGTTACGCCGCCGACCAt                                                            >  3:2747/1‑136 (MQ=255)
                                                                      cTTTGCAGAACGGAGCCGGTACGTAGATGACCGAAGCGTCAGCGCCGGTCGCTTCCACGGCTTCCTTGACGGTGTTGAACACCGGCAGGCCCAGGTGGGTGGTGCCACCCTTGCCTGGGGTTACGCCGCCGACCAt                                                            >  6:164755/1‑136 (MQ=255)
                                                                       tttGCAGAACGGAGCCGGTACGTAGATGACCGAAGCGTCAGCGCCGGTCGCTTCCACGGCTTCCTTGACGGTGTTGAACACCGGCAGGCCCAGGTGGGTGGTGCCACCCTTGCCTGGGGTTACGCCGCCGACCATc                                                           <  7:258403/136‑1 (MQ=255)
                                                                         tGCAGAACGGAGCCGGTACGTAGATGACCGAAGCGTCAGCGCCGGTCGCTTCCACGGCTTCCTTGACGGTGTTGAACACCGGCAGGCCCAGGTGGGTGGTGCCACCCTTGCCTGGGGTTACGCCGCCGACCATc                                                           <  2:295912/134‑1 (MQ=255)
                                                                         tGCAGAACGGAGCCGGTACGTAGATGACCGAAGCGGCAGCGCCGGTCGCTTCCACGGCTTCCTTGACGGTGTTGAACACCGGCAGGCCCAGGTGGGTGGTGCCACCCTTGCCTGGGGTTACGCCGCCGACCATc                                                           <  6:30986/134‑1 (MQ=255)
                                                                           cAGAACGGTGCTGGTACGTAGATAACAGAAGCGGTAGCGCCAGTGGCAGCAACGGCTTCACGCACGGTGTTGAACACCGGCAGGCCGAGGTGGGTGGTGCCGCCTTTACCTGGGGTTACGCCGCCAACCAtttta                                                        <  3:101678/135‑2 (MQ=255)
                                                                            aGAACGGCGCCGGTACGTAGATGACCGAAGCGTCAGCGCCGGTCGCTTCCACGGCTTCCTTGACGGTGTTGAACACCGGCAGGCCCAGGTGGGTGGTGCCACCCTTGCCTGGGGTTACGCCGCCGACCATCTTGGt                                                      <  4:114565/136‑1 (MQ=255)
                                                                            aGAACGGAGCCGGTACGTAGATGACCGAAGCGTCAGCGCCGGTCGCTTCCACGGCTTCCTTGACGGTGTTGAACACCGGCAGGCCCAGGTGGGTGGTGCCACCCTTGCCTGGGGTTACGCCGCCGACCATCTTGGt                                                      <  6:47756/136‑1 (MQ=255)
                                                                                 ggAGCTGGTACGTAGATGACCGAAGCGTCAGCGCCGGTCGCTTCCACGGCTTCCTTGACGGTGTTGAACACCGGCAGGCCCAGGTGGGTGGTGCCACCCTTGCCTGGGGTTACGCCGCCGACCATCTTGGTGCCg                                                  >  3:134217/1‑135 (MQ=255)
                                                                                   aGCCGGTACGTAGATGACCGAAGCGTCAGCGCCGGTCGCTTCCACGGCTTCCTTGACGGTGTTGAACACCGGCAGGCCCAGGTGGGTGGTGCCACCCTTGCCTGGGGTTACGCCGCCGACCATCTTGGTGCCGTAg                                               <  3:39252/136‑1 (MQ=255)
                                                                                      cGGTACGTAGATGACCGAAGCGTCAGCGCCGGTCGCTTCCACGGCTTCCTTGACGGTGTTGAACACCGGCAGGCCCAGGTGGGTGGTGCCCCCCTTGCCTGGGGTTACGCCGCCGACCATCTTGGTGCCGTAGGc                                             >  4:296917/1‑135 (MQ=255)
                                                                                      cGGTACGTAGATGACCGAAGCGTCAGCGCCGGTCGCTTCCACGGCTTCCTTGACGGTGTTGAACACCGGCAGGCCCAGGTGGGTGGTGCCACCCTTGCCTGGGGTTACGCCGCCGACCATCTTGGTGCCGTAGGc                                             >  8:179720/1‑135 (MQ=255)
                                                                                        gTACGTAGATGACCGAAGCGTCAGCGCCGGTCGCTTCCACGGCTTCCTTGACGGTGTTTAACACCGGCAGGCCCAGGTGGGTGGTGCCACCCTTGCCTGGGGTTACGCCGCCGACCATCTTGGTGCCGTAGGCAAt                                          <  7:177991/136‑1 (MQ=255)
                                                                                           cGTAGATAACAGAAGCGGTAGCGCCAGTGGCAGCAACGGCTTCACGCACGGTGTTGAACACCGGCAGGCCGAGGTGGGTGGTGCCGCCTTTACCTGGGGTTACGCCGCCAACCATTTTAGTGc                                                    >  1:185538/1‑123 (MQ=255)
                                                                                           cGTAGATAACAGAAGCGGTAGCGCCAGTGGCAGCAACGGCTTCACGCACGGTGTTGAACACCGGCAGGCCGAGGTGGGTGGTGCCGCCTTTACCTGGGGTTACGCCGCCAACCATTTTAGTGc                                                    <  2:185538/123‑1 (MQ=255)
                                                                                               gATGACCGAAGCGTCAGCGCCGGTCGCTTCCACGGCTTCCTTGACGGTGTTGAACACCGGCAGGCCCAGGTGGGTGGTGCCACCCTTGCCTGGGGTTACGCCGCCGACCATCTTGGTGCCGTAGGCAATGGCCTGt                                   <  3:229175/136‑1 (MQ=255)
                                                                                                aTGACCGAAGCGTCAGCGCCGGTCGCTTCCACGGCTTCCTTGACGGTGTTGAACACCGGCAGGCCCAGGTGGGTGGTGCCACCCTTGCCTGGGGTTACGCCGCCGACCATCTTGGTGCCGTAGGCAATGGCCTGtt                                  >  6:141488/1‑136 (MQ=255)
                                                                                                aTGACCGAAGCGTCAGCGCCGGTCGCTTCCACGGCTTCCTTGACGGTGTTGAACACCGGCAGGCCCAGGTGGGTGGTGCCACCCTTGCCTGGGGTTACGCCGCCGACCATCTTGGTGCCGTAGGCAATGGCCTGtt                                  >  8:54166/1‑136 (MQ=255)
                                                                                                aTGACCGAAGCGTCAGCGCCGGTCGCTTCCACGGCTTCCTTGACGGTGTTGAACACCGGCAGGCCCAGGTGGGTGGTGCCACCCTTGCCTGGGGTTACGCCGCCGACCATCGTGGTGCCGTAGGCAATGGCCTGtt                                  >  4:228764/1‑136 (MQ=255)
                                                                                                 tGACCGAAGCGTCAGCGCCGGTCGCTTCCACGGCTTCCTTGACGGTGTTGAACATCGGCAGGCCCAGGTGGGTGGTGCCACCCTTGCCTGGGGTTACGCCGCCGACCATCTTGGTGCCGTAGGCAATGGCCTGTTc                                 <  8:153150/136‑1 (MQ=255)
                                                                                                  gACCGAAGCGTCAGCGCCGGTCGCTTCCACGGCTTCCTTGACGGTGTTGAACACCGGCAGGCCCAGGTGGGTGGTGCCACCCTTGCCTGGGGTTACGCCGCCGACCCTCATGGTGCCGTAGGCAATGGCCTGTTCg                                >  5:283514/1‑136 (MQ=255)
                                                                                                     agAAGCGGTAGCGCCAGTGGCAGCAACGGCTTCACGCACGGTGTTGAACACCGGCAGGCCGAGGTGGGTGGTGCCGCCTTTACCTGGGGTTACGCCGCCAACCATTTTAGTGCCGTATGCAATGGCCTGTGCTGAg                             >  2:72674/2‑136 (MQ=255)
                                                                                                      gAAGCGTCAGCGCCGGTCGCTTCCACGGCTTCCTTGACGGTGTTGAACACCGGCAGGCCCAGGTGGGTGGTGCCACCCTTGCCTGGGGTTACGCCGCCGACCATCTTGGTGCCGTAGGCAATGGCCTGTTCTGAGt                            <  5:18499/136‑1 (MQ=255)
                                                                                                      gAAGCGTCAGCGCCGGTCGCTTCCACGGCTTCCTTGACGGTGTTGAACACCGGCAGGCCCAGGTGGGTGGTGCCACCCTTGCCTGGGGTTACGCCGCCGACCATCTTGGTGCCGTAGGCAATGGCCTGTTCGGAGt                            <  1:93704/136‑1 (MQ=255)
                                                                                                                    ggTCGCTTCCACGGCTTCCTTGACGGTGTTGAACACCGGCAGGCCCAGGTGGGTGGTGCCACCCTTGCCTGGGGTTACGCCGCCGACCATCTTGGTGCCGTAGGCAATGGCCTGTTCGGAGTGGAAAGTACCCTGc              <  2:158990/136‑1 (MQ=255)
                                                                                                                         cTTCCACGGCTTCCTTGACGGTGTTGAACACCGGCAGGCCCAGGTGGGTGGTGCCACCCTTGCCTGGGGTTACGCCGCCGACCATCTTGGTGCCGTAGGCAATGGCCTGTTCGGAGTGGAAAGTACCCTGCGAGcc         <  2:73520/136‑1 (MQ=255)
                                                                                                                                ggCTTCCTTGACGGTGTTGAACACCGGCAGGCCCAGGTGGGTGGTGCCACCCTTGCCTGGGGTTACGCCGCCGACCATCTTGGTGCCGTAGGCAATGGCCTGTTCGGAGTGGAAAGTACCCTGCGAGCCGGTGAAg  <  2:251744/136‑1 (MQ=255)
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AGGGTAGGAATGCCTTCGGTGATGCAGACGATCAGCTTGATGCCGCCAAAGGCAGCTTCCAGGATCGAGTCTTTGCAGAACGGAGCCGGTACGTAGATGACCGAAGCGTCAGCGCCGGTCGCTTCCACGGCTTCCTTGACGGTGTTGAACACCGGCAGGCCCAGGTGGGTGGTGCCACCCTTGCCTGGGGTTACGCCGCCGACCATCTTGGTGCCGTAGGCAATGGCCTGTTCGGAGTGGAAAGTACCCTGCGAGCCGGTGAAG  >  ACB143/4719961‑4720224

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑