New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	ACB143	= 2172434	91 (1.510)	48 (0.800)	30/260	0.5	51.2%	intergenic (+176/+92)	CJ019_02060/CJ019_02061	IS1182 family transposase ISPpu16/hypothetical protein
	?	ACB143	= 5563631	1 (0.020)					coding (1046/1902 nt)	mutL_2	DNA mismatch repair protein MutL

AGAACGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  ACB143/2172302‑2172434 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTTTCCAATGGTGGCAGCGGCGCC  <  ACB143/5563631‑5563498                                                                                                                                                                                                                                                                             AGAACGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTACTTGCCAGTTTAGCAAGCCTCTCTAGATCCCTGCGCCATTCAACGCATTTCGCGTCTTTTCACACAGCCTGGTA                                                                                                                                      >  2:113890/1‑135   AACGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCT                                                                                                                                   >  8:144383/1‑136             ATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGAAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACTGCCTGGTACCTGAGCTGGTTC                                                                                                                         >  1:80956/1‑136                GCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCC                                                                                                                      <  6:19515/136‑1                GCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCC                                                                                                                      >  6:135371/1‑136                          CCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCGGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGC                                                                                                              >  2:32585/1‑134                          CCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGC                                                                                                              >  5:365186/1‑134                            CCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGC                                                                                                          <  4:169728/136‑1                                 ACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCC                                                                                                     >  7:202709/1‑136                                 ACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCC                                                                                                     <  2:252236/136‑1                                 ACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCC                                                                                                     <  7:281566/136‑1                                  CGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCG                                                                                                    >  3:20760/1‑136                                      GATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGa                                                                                                  >  5:84999/1‑133                                      GATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGT                                                                                                  >  4:335804/1‑134                                      GATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGT                                                                                                  >  7:226852/1‑134                                        TTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGACTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCTTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGACACACCGGCCAGCAGGCCGGTGAtt                                                                                              >  6:202831/1‑134                                             GCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGG                                                                                          <  8:171971/135‑1                                                 AACCACGCAAGTTCTTGCCAGTTTGGCAAGCCTCTCTAGCTCCCTGCGCCCTTCAACGCATTTCGCGTGTTATCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCC                                                                                     <  6:296054/136‑1                                                    CACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGG                                                                                  >  3:55894/1‑136                                                    CACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAG                                                                                                           <  3:208404/111‑1                                                    CACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAG                                                                                                           >  4:208404/1‑111                                                         AATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGA                                                                              >  1:361172/1‑135                                                         AATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGA                                                                              >  4:358850/1‑135                                                         AATTTCTTGCCAGATTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGATTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGAGAGTTCGGGCCCCAGGGTGA                                                                              >  1:339032/1‑135                                                             TCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATG                                                                          <  6:35489/135‑1                                                                        TGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCG                                                              >  2:277957/1‑136                                                                        TGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTC                                                               <  6:353421/135‑1                                                                            AAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGG                                                          <  8:128452/136‑1                                                                                           CCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTC                                           <  8:94634/136‑1                                                                                                GCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCC                                      >  6:290559/1‑136                                                                                                GCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCC                                      >  8:18264/1‑136                                                                                                GCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCC                                      >  8:233595/1‑136                                                                                                GCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCC                                      >  5:128927/1‑136                                                                                                GCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCC                                      >  4:254549/1‑136                                                                                                GCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCC                                      >  3:217744/1‑136                                                                                                GCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCC                                      >  2:173787/1‑136                                                                                                GCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCGTGAACAGCCTCGCGCC                                      >  3:281502/1‑136                                                                                                   CTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCG                                   <  4:256628/136‑1                                                                                                       AACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAA                                >  2:203290/1‑135                                                                                                       AACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAG                                                                                                                                >  7:179421/1‑39                                                                                                       AACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAG                                                                                                                                <  8:179421/39‑1                                                                                                                 GCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTTTC                     >  5:76194/1‑136                                                                                                                 GCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTTTC                     >  6:317620/1‑136                                                                                                                 GCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTGCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTTTC                     >  1:267178/1‑136                                                                                                                         TCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTTTGCCATGGTG             >  1:194171/1‑136                                                                                                                         TCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTTTCCAATGGTG             >  1:318766/1‑136                                                                                                                               AGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTTTCCAATGGTGGCAGCG       <  5:331680/136‑1                                                                                                                                    GGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTTTCCAATGGTGGCAGCGGCGCC  >  5:178234/1‑136                                                                                                                                     GTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTTTCCAATGGTGGCAGCGGCGC   <  1:277957/134‑1                                                                                                                                                                                                                                                                             AGAACGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  ACB143/2172302‑2172434 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTTTCCAATGGTGGCAGCGGCGCC  <  ACB143/5563631‑5563498

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.