Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | ACB143 | 4,245,128 | 0 | A | C | 33.9% | 36.6 / 12.6 | 61 | L178R (CTG→CGG) | CJ019_03982 | Crotonyl‑CoA hydratase |
Reads supporting (aligned to +/- strand): ref base A (12/25); new base C (14/5); total (26/35) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.78e-03 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.76e-01 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
CCGTCGCGTATCAGCCGCTTGGTCTGCGCATAGGCGAAGGTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGATCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTGGCGCCGGCATCGGGGCTGTAGCCCATGCTGGTGTAG > ACB143/4244999‑4245250 | ccGTCGCGTATCAGCCGCTTGGTCTGCGCATAGGCGAAGGTCGGGCCATTGGCCCGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCAGGgcgc > 3:113222/1‑136 (MQ=255) ccGTCGCGTATCAGCCGCTTGGTCTGCGCATAGGCGAAGGTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACGTCGCTGCCCAACCCGGCGGCCCGGgcgc > 2:16198/1‑136 (MQ=255) cgcgTATCAGCCGCTTGGTCTGCGCATAGGCGAAGGTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCCGGGCGCGATc > 8:167729/1‑136 (MQ=255) gCTTGGTCTGCGCATAGGCGAAGGTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGCTCGGCGCCCCACaa > 2:48495/1‑136 (MQ=255) ggTCTGCGCATAGGCGAAGGTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGCCCAACCCGGCGGCCCGGGGGCGCTCGGCGCCCCCCAACacg > 4:195860/1‑136 (MQ=255) tGCGCATTGGCGATGGGCGGGCAATGGGCCAGGCGCCCGGCCAGTTCGGCGGAAACGGCAGGAAACTGCTCGTCGGCGCAGAGTTCGCTGACCAACCCGGCGGCCTGGGCGCTATCGGCGCCCCACAACTCGTCGa < 4:89782/136‑1 (MQ=255) cgcATAGGCGAAGGGGGGGCCATTGGCCTGGCGCCCGGCCAGTTCGGGGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACAAACCCGGCGGCCAGGGCGCGATCGGCGCCCCACAACtcgtcg < 1:365168/133‑1 (MQ=255) aTAGGCGAAGGTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGCCTTCGCTGACCAACCCGGCGGCCAGGGCGCGCTCGGCGCCCCACAACTCGTCGAGGaa > 3:244082/1‑135 (MQ=255) aTAGGCGAAGGTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGCCCAACCCGGCGGCCCGGGCGCGATCGGCGCCCCCCCACTCGACGAGGaa > 8:282502/1‑135 (MQ=255) aTAGGCGAAGGTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGCTCGGCGCCCCACAACTCGGCGAGGaa > 6:242424/1‑135 (MQ=255) aTAGGCGAAGGTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGATCGGCGCCCCACAACTCGTCGCggta > 2:234457/1‑133 (MQ=255) aTAGGCGAAGGTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGATCGGCGCCCCACAACTCGTCGAGGAAc < 7:245223/136‑1 (MQ=255) tAGGCGATGGTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTCCTCGTCGGCGAAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGATCGGCGCCCCACAACTCGTCGAGGAAca < 2:25762/136‑1 (MQ=255) tAGGCGATGGGCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCACCGGCAGGCAACGGCTCGTCGGCGTAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGATCGGCGCCCCACAACTCGTAGAGGAAca < 4:297388/136‑1 (MQ=255) tAGGCGAAGGTCGGGCCATTGGCCAGGCGCCCGGCCAGTTGGGCGGCAACTGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGATCGGCGCCCCACAACTCGTCGAGGAAca < 2:253237/136‑1 (MQ=255) tAGGCGAAGGTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGATCGGCGCCCCACAACTCGTCGAGGAAca < 7:187362/136‑1 (MQ=255) aGGCGATGGTCGGGCCTTTGGCCTGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGATCGGCGCCCCACAACTCGTCGAGGAAca < 3:60350/135‑1 (MQ=255) aGGCGAAGGTCGGGCCATTGGCCAGGCGCCCGGCCAGTGCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGATCGGCGCCCCACAACTCGTCGAGGAAca < 5:107685/135‑1 (MQ=255) aGGCGAAGGGCGGGCCATTGGCCAGGCGCCGGGCCTGTTCGGCGGCAAGGGCAGGCAACTGCTGGGGGGCGCAGACTTCGCTGACCAACCCGGCGGCCAGGGGGCGATGGGCGCCCCACAACTCGTCGAGGAAca < 1:359126/135‑1 (MQ=255) cGAAGGTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCCGGGCGCGATCGGCGCCCCACAACTCGTCGAGGAAcagcag > 4:50761/1‑136 (MQ=255) gTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACGAACCCGGCGGCCCGGGCGCGATCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCt > 3:276711/1‑136 (MQ=255) gTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCACCCCGGCGGCCCGGGCGCGCTCGGCGGCCCCCCACTCGTCGAGGCAAAGCCgggcct > 3:69958/1‑132 (MQ=255) gTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCCGGGCGCGCTCGGCGCCCCCCAACGCGTCGGGGAACCGAAGgcgcg > 7:327905/1‑135 (MQ=255) gTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGATCGGCGCCCCACCACTCGTCGAGGAACAGCAGGCGCt > 2:10323/1‑136 (MQ=255) gTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGATCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCt > 1:71325/1‑136 (MQ=255) gcGGGCCTTTGGCCTGGCGCCCGGCCTGGGGGGCGGCAACGGCAGGCAACTGCGCGTCGGCGCAGACTTCGCTCACCAACCCGGCGCCCAGGGCGCTCTCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCtt < 5:97489/135‑1 (MQ=255) cATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCCGGGCGCGCTCGGCGCCCCCCACCACGGCGCGGGACACCCCGCGCGTgggcgg > 5:28079/1‑132 (MQ=255) ccAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCCCGGCGCGATCGGCGCCCCCCAACACGGCGAGGCCCCCCCGGCGCTTGGCCGGCTCg > 4:54905/1‑134 (MQ=255) ggCGCCCGGCCTGTTCGGCGGCAACGGCAGGAAACTGCTCGTCGGGGCAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGATCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGcc < 4:252419/136‑1 (MQ=255) ggCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGAGCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGcc < 3:71930/136‑1 (MQ=255) ggCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGAGCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGcc < 2:29013/136‑1 (MQ=255) gcgcCCGGCCAGTTCGGCGGAAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGATCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGcc < 7:54141/135‑1 (MQ=255) gcgcCCGGCCAGTGCGGGGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCACCCCGGCGGCCCGGGCGCTAGCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGcc < 1:51943/135‑1 (MQ=255) cgcCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCAGGGCCCGATCCGCGCCCCACACCTCGGCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGa > 8:22740/1‑136 (MQ=255) cgggCCAGTTCGGCGGCAACGGCAGGCAACGGCTCGGCGGCGCATACTGCGCTGACCACCCCGGCGGCCAGGGCGCGAGCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCa < 6:347170/134‑1 (MQ=255) ggcggcAACGGCAGGCAACTGCTCGTCGGCGCAGCCTTCGCTGACCACCCCGGCGGCCAGGGCGCGATCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGGGGGAgg > 8:255457/1‑136 (MQ=255) ggcggcAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCCGGGCGCGCTCGGCGCCCCCCAACTCCTGGAGGGACCGCAGGCGCGTGGCCTGCTCGCTGCCGGTCAGCCGTgggcgg > 7:318249/1‑132 (MQ=255) ggcggcAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCCGGGCGCGATCGGCGCCCCACAACGCGTCGCGGAACAGCAGGCGCTTGGCCTGCTCGCTGGCGCTCAGCCGTGGCAgg > 5:141161/1‑136 (MQ=255) cggcAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCCCGGCGCGATCGGCGCCCCCCCCCAAGTCGAGGAACACCCCGCGCATGGCCTGCTCCCGGCCGAACAGCCGGGGCacggg > 3:191766/1‑132 (MQ=255) cAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGAGCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCa < 7:91927/136‑1 (MQ=255) caggcaACTGCTCGGCGGCGCAGACTTCGCTGGCCCACCCGGCGGCCAGGGCGCGATCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTGgc < 8:96741/136‑1 (MQ=255) caggcaACTGCGCGTCGGCGCAGACTTCGCTCCCCACCCCGGCGGCCCGGGCGCGATCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTGgc < 6:19752/136‑1 (MQ=255) caggcaACTGCGCGCCGGCGCAGACTTCGCGGCCCACCCCGGCGGCCCGGGCGCGAGCGGCCCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTGgc < 5:309151/136‑1 (MQ=255) accTGCGCGCCGGCGCATACTGCCCTCACCACCCCGGCGGCCCGGGCGCGAGCGGCCCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTGGCGCCgg < 6:28079/134‑1 (MQ=255) aaCTGCGCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGATCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTGGCGCCgg < 4:120288/136‑1 (MQ=255) cTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGAGCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTGGCGCCGGCa < 4:277848/136‑1 (MQ=255) cTGCTCGGCGGCGCATACTGCGCTGACCACCCCGGCGGCCAGGGCGCGAGCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTGGCGCCGGCa < 1:217226/136‑1 (MQ=255) tGCTGGGCGGCGCAGACTGCGCTGACCACCCCGGCGGCCAGGGCGCTAGCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTGGCGCCGGCAt < 1:322337/136‑1 (MQ=255) gtcgGCGCAGACTTCGCTGCCCACCCCGGCGGCCAGGGCGGGAGCGGCGCCCCACAACTCGTGGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTGGCGCCGGCATCgggg < 7:265666/136‑1 (MQ=255) cgGCGCATAGTGCGCTGCCCACCCCGGCGGCCGGGGCGCGAGCGGGGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTGGCGCCGGCATCGGGGCt < 4:161310/136‑1 (MQ=255) ggCGCAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGATCGGCGCCCCACAAc > 4:303317/1‑55 (MQ=255) ggCGCAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGATCGGCGCCCCACAAc < 3:303317/55‑1 (MQ=255) cgcAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGGTGGGCGGCCCCCAAAGAGGCGAGGCACCGCCGGCTCTTTGCCGGGTGCCAGCCGATCAGGCGGGGGAGGTGCCACCTGGCGCCGGCCTCgcggggg > 6:106503/1‑131 (MQ=255) cgcAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGATCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTGGCGCCGGCATCGGGGCTg > 3:206877/1‑134 (MQ=255) gcattCGCTCACCACCCCGGGGGCCTGGGCGGTATGGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTGGCGCCGGCATCGGGGCTGTAGccc < 4:95308/133‑1 (MQ=255) gACCAACCCGGCGGCCCCGGCGCGATCGGCGCCCCCCAACTCGTCGAGGAACAGCAGGCGCTTGGCCAGCTCGCTGCCGCTAAGCCGTGGCAGGGGCCAGCTGGCGCCGGCATCGGGGCTGTCGCCCCTGCTGgtg > 5:364177/1‑136 (MQ=255) cccACCCCGGGGGCCCGGGGGCGTTCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTGGCGCCGGCATCGGGGCTGTAGCCCATGCTGgtgt < 7:177361/135‑1 (MQ=255) accaccCGGGGGGCCTGGGGGCGTTCGGCGCCCCAGAACTCGTCGAGGAACTGCTGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTGGCGCCGGCATCGGGGCTGTAGCCCATGCTGgtgt < 6:323836/136‑1 (MQ=255) acaaaCCCGGCGGCCAGGGCGCGTTCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTGGCGCCGGCATCGGGGCTGTAGCCCATGCTGgtgt < 1:328256/133‑1 (MQ=255) aCCAACCCGGCGGCCTGGTCGCGAGCGGCGCCCGACAACTGGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTGGCGCCGGCATCGGGGCTGTAGCCCATGCTGgtgt < 2:218648/136‑1 (MQ=255) ccccccGGCGGCCAGGGGGCGATCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTGGCGCCGGCATCGGGGCTGTAGCCCATGCTGGTGTAg < 2:363588/133‑1 (MQ=255) | CCGTCGCGTATCAGCCGCTTGGTCTGCGCATAGGCGAAGGTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGATCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTGGCGCCGGCATCGGGGCTGTAGCCCATGCTGGTGTAG > ACB143/4244999‑4245250 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |