New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	ACB143	3359593 =	41 (0.840)	39 (0.800)	28/258	0.5	64.6%	intergenic (+219/‑151)	pikAII_1/CJ019_03160	Narbonolide/10‑deoxymethynolide synthase PikA2,modules 3 and 4/Tn3 family transposase ISPa42
	?	ACB143	5371600 =	2 (0.040)					intergenic (‑58/‑135)	grpE/recN	Protein GrpE/DNA repair protein RecN

GAGGCAAAAGCATCAGCATAGACGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  ACB143/3359725‑3359593 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTATATGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGTATAAATAACCAGACCTGATTTCCGGGAGCCGACCCCA  >  ACB143/5371600‑5371735                                                                                                                                                                                                                                                                               GAGGCAAAAGCATCAGCATAGACGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAAGTTTTGCCTTATCTCGGCATAACCCCTATA                                                                                                                                      >  3:25522/1‑137       AAAGCATCAGCATAGACGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTATATGGGGC                                                                                                                                >  1:112573/1‑137       AAAGCATCAGCATAGACGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTATATGGGGC                                                                                                                                >  2:292274/1‑137                     cACGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTATATGGGGCCGGAAAAACCAGGT                                                                                                                  <  2:107707/136‑1                     GACGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTATATGGGGCCGGAAAAACCAGGT                                                                                                                  <  6:251096/137‑1                            AGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTATATGGGGCCGGAAAAACCAGGTTCAAGGG                                                                                                           <  8:166128/137‑1                              CCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTATATGGGGCCGGAAAAACCAGGTTCAAGGGGC                                                                                                         >  1:87838/1‑137                              CCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTATATGGGGCCGGAAAAACCAGGTTCAAGGGGC                                                                                                         >  3:245002/1‑137                                 GACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTATATGGGGCCGGAAAAACCAGGTTCAAGGGGCAAG                                                                                                      <  4:256031/137‑1                                     GTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTATATGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAG                                                                                                  >  8:289184/1‑137                                           GACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTATATGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCA                                                                                            <  7:56116/137‑1                                               AGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTATATGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGAC                                                                                        <  4:72360/137‑1                                                          GCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTATATGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAAc                                                                             <  7:60199/137‑2                                                              CTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCTGCATAACCCCTATATGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGC                                                                         <  2:145382/137‑1                                                              CTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTATATGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGC                                                                         <  7:155616/137‑1                                                                 GAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTATATGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAA                                                                      >  2:206814/1‑137                                                                          TTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTATATGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTG                                                             >  3:73722/1‑137                                                                          TTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTATATGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTG                                                             <  6:108440/137‑1                                                                            TAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTATATGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGC                                                           >  8:123309/1‑137                                                                            TAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTATATGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGC                                                           >  8:200433/1‑137                                                                             AAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTATATGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCA                                                          <  4:185948/137‑1                                                                              AATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTATATGGGGCCGGAAAAACCAGGT                                                                                                                  >  6:87872/1‑80                                                                              AATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTATATGGGGCCGGAAAAACCAGGT                                                                                                                  <  5:87872/80‑1                                                                                     TATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTATATGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCATGAA                                                  >  8:219381/1‑137                                                                                       TTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTATATGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAA                                                <  4:245002/137‑1                                                                                         TACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTATATGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAA                                              <  8:26944/137‑1                                                                                         TACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTATATGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAA                                              <  7:289184/137‑1                                                                                         TACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTATATGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAA                                              <  2:283004/137‑1                                                                                            AGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTATATGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTA                                           <  1:206814/137‑1                                                                                                CGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTATATGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGT                                       >  5:4483/1‑137                                                                                                CGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTATATGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGACTGAAAAAAGTACTGT                                       >  5:32957/1‑137                                                                                                        CTAATTTTTGCCTTATCTCGGCATAACCCCTATATGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGTATAAATAA                               <  6:201833/137‑1                                                                                                            TTTTTGCCTTATCTCGGCATAACCCCTATATGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGTATAAATAACCAG                           <  2:212396/137‑1                                                                                                                          CGGCATAACCCCTATATGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGTATAAATAACCAGACCTGATTTCCGGG             >  2:18035/1‑137                                                                                                                           GGCATAACCCCTATATGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGTATAAATAACCAGACCTGATTTCCGGGA            <  1:292274/137‑1                                                                                                                           GGCATAACCCCTATATGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAAGCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGTATAAATAACCAGACCTGATTTCCGGGA            <  3:205357/137‑1                                                                                                                             aATAACCCCTATATGGGGCCGTAAAAACCATGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGTATAAATAACCAGACCTGATTTCCGGGAGC          <  8:306664/136‑1                                                                                                                                  CCCCTATATGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGTATAAATAACCAGACCTGATTTCCGGGAGCCGACC     <  4:25522/137‑1                                                                                                                                    CCTATATGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGTATAAATAACCAGACCTGATTTCCGGGAGCCGACCCC   >  1:157022/1‑137                                                                                                                                     CTATATGGGGCCGGAAAAACCAGGCTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGTAGGGGCATTGGCAGGCCTGAAAAAAGTACAGTATAAATAACCAGACCTGATTTCCGGGAGCCGACCCCA  <  2:3034/137‑1                                                                                                                                                                                                                                                                               GAGGCAAAAGCATCAGCATAGACGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  ACB143/3359725‑3359593 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTATATGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGTATAAATAACCAGACCTGATTTCCGGGAGCCGACCCCA  >  ACB143/5371600‑5371735

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.