| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | ACB143 | = 1237161 | 35 (0.590) | 9 (0.150) | 9/236 | NT | 10.9% | coding (377/675 nt) | rnt | Ribonuclease T |
| ? | ACB143 | = 2172433 | 113 (1.940) | intergenic (+175/+93) | CJ019_02060/CJ019_02061 | IS1182 family transposase ISPpu16/hypothetical protein | |||||
CCAGGCCCGCCAGGGTGGCGGTGTCGAAGCTGGAGAACGGGTGGAACGGGTTGCGCTTCAGGTCATTGCGCGCCACTGCTGCATTGAGGAAACCCAGGTCGAAGCTGCTGTTGTGGCCGACCAGAATCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > ACB143/1237030‑1237161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAGTCGTTCTTG < ACB143/2172433‑2172300 CCAGGCCCGCCAGGGTGGCGGTGTCGAAGCTGGAGAACGGGTGGAACGGGTTGCGCTTCAGGTCATTGCGCGCCACTGCTGCAGTGAGGAAACCCAGGTCGACGCTGCTGTTGTGGCCGACCAGAATCGCCCCAGG > 2:28925/1‑136 ACGGGTGGAACGGGTTGCGCTTCAGGGCATTGCGCGCCACTGCTGCATTGAGGAAACCCAGGTCGAAGCTGCTGTTGTGGCCGACCAGAATCGCCCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCA < 5:58234/136‑1 TTGCGCTTCAGGTCATTGCGCGCCACTGCTGCATTGAGGAAACCCAGGTCGAAGCTGCTGTTGTGGCCGACCAGAATCGCCCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGG > 7:252094/1‑136 GCGCGCCACTGCTGCATTGAGGAAACCCAGGTCGAAGCTGCTGTTGTGCCCGACCAGAATCGCCCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGC > 4:176992/1‑133 ACCCAGGTCGAAGCTGCTGTTGTGGCCGACCAGAATCGCCCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATC < 8:25971/136‑1 CAGGTCGAAGCTGCTGTTGTGGCCGACCAGAATCGCCCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCC > 1:381131/1‑136 CGAAGCTGCTGTTGTGGCCGACCAGAATCGCCCCAGGCTGTGTGAAAACACGAGAAATGCCTTGAAGCGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCT > 4:255041/1‑136 CGAAGCTGCTGGTGTGGCCGACCAGAAGCGCCCCAGTCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCT < 6:380097/136‑1 GCCGACCAGAATCGCCCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGA > 3:399747/1‑136 ACCAGAATCGCCCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCACATGTGGCGATGTG < 2:115663/136‑1 taCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAGTCGTTCTT < 5:119347/134‑1 taCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAGTCGTTCTT < 5:81622/134‑1 CCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAGTCGTTCTTG < 5:41965/136‑1 CCAGGCCCGCCAGGGTGGCGGTGTCGAAGCTGGAGAACGGGTGGAACGGGTTGCGCTTCAGGTCATTGCGCGCCACTGCTGCATTGAGGAAACCCAGGTCGAAGCTGCTGTTGTGGCCGACCAGAATCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > ACB143/1237030‑1237161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAGTCGTTCTTG < ACB143/2172433‑2172300 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |