Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | ACB143 | 5,693,183 | T→G | 33.8% | R238R (CGT→CGG) | pyrC' → | Dihydroorotase‑like protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | ACB143 | 5,693,183 | 0 | T | G | 33.8% | 44.4 / 9.2 | 61 | R238R (CGT→CGG) | pyrC' | Dihydroorotase‑like protein |
Reads supporting (aligned to +/- strand): ref base T (18/21); new base G (6/16); total (24/37) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.80e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
AGGTGCCATGGCCAGCTTCCTCGGCCTGCCGGGCATCCCGGAGAGCGCCGAAACCGTGGCCCTGGCGCGCAACCTGCTGC‑TGGTGGAACAGAGCGGCGTGCGTGCGCACTTCAGCCAGATCACCAGCGCCCGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGTTCTCCAGCCTGTACCACGTGCAGCCGCCGCTGCG > ACB143/5693051‑5693317 | aGGTGCCATGGCCAGCTTCCTCGGCCTGCCGGGCATCCCGGAGAGCGCCGAAACCGTGGCCCTGGCGCGCAACCTGCTGC‑TGGTGGAACAGAGCGGCGTGCGTGCGCCCGTCAGCCAGATCACCAGCGCCCGTGgc > 1:234859/1‑136 (MQ=255) ggTGCCATGGCCAGCTTCCTCGGCCTGCCGGGCATCCCGGAGAGCGCCGAAACCGTGGCCCTGGCGCGCAACCTGCTGC‑TGGTGGAACAGAGCGGCGTGCGGGCGCCCTTCAGCCCGATCACCACCGCCCGTGgcg > 7:71718/1‑136 (MQ=255) ccATGGCCAGCTTCCTCGGCCTGCCGGGCATCCCGGAGAGCGCCGAAACCGTGGCCCTGGCGCGCACCCTGCTGC‑TGGTGGAACAGAGCGGCGGGGGGGGGCCCTTCCGCCCCGTCACCCGCCCCCGGGGcgcgcg > 4:85623/1‑136 (MQ=255) ccATGGCCAGCTTCCTCGGCCTGCCGGGCATCCCGGAGAGCGCCGAAACCGTGGCCCTGGCGCGCAACCTGCTGC‑TGGTGGAACAGAGCGGCGTGGGTGCGCAGATCAGCCAGATAAACCCCGCCCGGGGcgcgcg > 6:95679/1‑136 (MQ=255) ccATGGCCAGCTTCCTCGGCCTGCCGGGCATCCCGGAGAGCGCCGAAACCGTGGCCCTGGCGCGCAACCTGCTGC‑TGGTGGAACAGAGCGGCGTGCGTGCGCACTTCAGCCAGATCACCAGCGCCCGTGGcgcgcg > 8:118491/1‑136 (MQ=255) cATGGCCAGCTTCCTCGGCCTGCCGGGCATCCCGGAGAGCGCCGAAACCGTGGCCCTGGCGCGCAACCTGCTGC‑TGGTGGAACAGAGCGGCGTGCGTGGGCACATAAACCCGAAAAACACCGCCCGTGgcgcgccg > 4:178705/1‑134 (MQ=255) cATGGCCAGCTTCCTCGGCCTGCCGGGCATCCCGGAGAGCGCCGAAACCGTGGCCCTGGCGCGCAACCTGCTGC‑TGGTGGAACAGAGAGGCGTGCGGGCGCGCATGAGACAGATCAACCGCCCCCGTGgcgcccca > 2:77925/1‑132 (MQ=255) cAGCTTCCTCGGCCTGCCGGGCATCCCGGAGAGCGCCGAAACCGTGGCCCGGGCGCGCAACCTGCTGC‑TGGTGGACCAGAGCGGCGTGCGTGCGCACTTCAGCCAGATCACCAGCGCCCGGGGCGCGCGGCTGATc < 8:128220/136‑1 (MQ=255) cAGCTTCCTCGGCCGGCCGGGCATCCCGGAGAGCGCCTAAACCGTGGCCCTGGCGCGCAACCTGCTGC‑TGGTGGAACAGCGCGGCGTGCGGGCGCACTTCAGCCATATCACCAGCGCCCGTGGCGCGCGGCTGATc < 3:247480/136‑1 (MQ=255) aGCTTCCTCGGCCTGCCGGGCATCCCGGAGAGCGCCGAAACCGTGGCCCTGGCGCGCAACCTGCTGC‑TGGTGGATCAGAGCGGCGGGCGGGGGCCCGTCAGCCAGCTGCCCAGCCCCCGGGGCGCGCGGcggctag > 5:318228/1‑130 (MQ=255) ccTCGGCCTGCCGGGCATCCCGGAGAGCGCCGAAACCGTGGCCCTGGCGCGCAACCTGCTGC‑TGGTGGAACAGAGCGGCGTGCGGGGGGCCTTCAGCCCGATCACCCCCGCCCGTGGCGCGCGGCGGCTCgccccg > 7:58435/1‑134 (MQ=255) ctgggCGTGCCGGGCAGCCCGGAGCGCGCCTAAACCGGGGCCCTGGCGCGAAACCTGCTGC‑TGGGGTAACCGCGCGGCGGGCGGGCGCACTTCCGCCATACCCCCCGCGCCCGGGGCGCGCGGCTGATCgcccagg < 8:372233/133‑1 (MQ=255) cTCGGCCTGCCGGGCATCCCGGAGAGCGCCGAAACCGTGGCCCTGGCGCGCAACCTGCTGC‑TGGTGGAACAGAGCGGCGTGCGTGCGAACTTCAGCCAGATCACCAGCGCCCGTGGCGCGCGGCTGATCgcccagg < 5:196037/136‑1 (MQ=255) cTCGGCCTGCCGGGCATCCCGGAGAGCGCCGAAACCGTGGCCCTGGCGCGCAACCTGCTGC‑TGGTGGAACAGAGCGGCGGGCGTGCGCACTTCAGCCAGATCACCAGCGCCCGTGGCGCGCGGCTGATCgcccagg < 2:125293/136‑1 (MQ=255) gCCTGCCGGGCATCCCGGAGAGCGCCGAAACCGTGGCCCTGGCGCGCAACCTGCTGC‑TGGTGGAACAGAGCGGCGTGCGTGGGCCCTTCAGCCCGCTCACCCGCGCCCGTGGCGCGCGGCGGATCgcccaggcc > 1:48431/1‑134 (MQ=255) gCCTGCCGGGCATCCCGGAGAGCGCCGAAACCGTGGCCCTGGCGCGCAACCTGCTGC‑TGGTGGAACAGAGCGGCGTGCGTGCGCACATCAGCCAGATCACCCCCCCCCGTGGCGCGCGGCTGCTAgccccggcccc > 6:303693/1‑135 (MQ=255) gCCTGCCGGGCATCCCGGAGAGCGCCGAAACCGTGGCCCTGGCGCGCAACCTGCTGC‑TGGTGGAACAGAGCGGCGTGCGGGCGCACATCAGGCACAGAACCCACCCCCGGGGGGCGCGGGGGCTCgcccacgcgca > 2:207625/1‑136 (MQ=255) gggCATCCCGGAGAGCGCCGAAACCGTGGCCCGGGCGCGCAACCTGCTGC‑GGGTGGACCAGAGCGGCGTGCGGGCGCACTTCAGCCAGCTCACCAGCGCCCGGGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTg < 5:382688/136‑1 (MQ=255) gggCAGCCCGGAGAGCGCCGAAACCGTGGCCCTGGCGCGCAACCTGCTGC‑TGGTGGAACAGAGCGGCGTGCGTGCGCACTTCAGCCAGAGCACCCGCGCCGGGGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTg < 1:339505/136‑1 (MQ=255) gcgcCTAAACGGGGGCCCGGGCGCGCAACCTGCTGC‑TGGTGGAACCGCGGGGGGGGGGTGCGCAATTCACCCACATCCCCCCCGCCCGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAAc < 7:154438/136‑1 (MQ=255) gcgcCTAAACCGTGGCCCGGGCGCGCAACCTGCTGG‑TGGGGCAACAGCGCGGGGGGCGGGCCCACTTCAGCCACACCCCCCGCGCCCGGGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAAc < 6:211661/136‑1 (MQ=255) gcgcCGAAACCGTGGCCCTGGCGCGCAACCTGCTGC‑TGGTGGAACAGAGCGGCGTGCGTGCGCACTTCAGCCAGATCACCAGCGCCCGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAAc < 7:82271/136‑1 (MQ=255) ggcCGAACCCGTGGCCCTGGCGCGCAACCTGCGGC‑TGGTGGAACAGAGCGGCGTGCGTGCGCATTTCAGCCAGAGCACCAGCGCCGGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAAcc < 7:247526/135‑1 (MQ=255) gaaccggTGGCCCGGGCGCGCACCCGGCTGG‑TGGTGGACCCGCGCGGGGGGCGTGCGCACTGCCCCCCGACCCCCCGCGCCCGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAAccgccg < 1:206840/130‑1 (MQ=255) gAAACGGTGGCCCGGGCGCGCAACCTGCTGC‑GGGTGGAACAGCGCGGCGTGCGGGCGCACTTCAGCCATATCACCAGCGCCGGGGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAAccgccg < 7:206598/136‑1 (MQ=255) gAAACCGTGGCCCTGGCGCGCAACCTGCTGC‑TGGTGGAACAGAGCGGCGTGCGTGCGCACTTCAGCCAGATCACCAGCGCCCGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAAccgccg < 5:183900/136‑1 (MQ=255) gAAACCGTGGCCCTGGCGCGCAACCTGCTGC‑TGGTGGAACAGAGCGGCGTGCGTGCGCACTTCAGCCAGATCACCAGCGCCCGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAAccgccg < 7:118491/136‑1 (MQ=255) aaCCGTGGCCCTGGCGCGAAACCTGCTGC‑TGGTGGAACAGAGCGGCGTGCGTGCGCACTTCAGCCAGATCACCAGCGCCCGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGa < 2:334858/135‑1 (MQ=255) ccGTGGCCCTGGCGCGCAACCTGCTGC‑TGGTGGAACAGAGCGGCGTGCGGGGGGCCCTAAGCCCGCAAACCCACCCCCCGGGCGCGCCGCCGGTCGCCCCCGCCCCCGCCGTGGGCCGGCCGGGGAcccccgcggg > 2:167595/1‑132 (MQ=255) ggTGGCCCTGGCGCGCAACCTGCTGC‑TGGTTTACCATAGGGGCGGGGGTGCGCACTTCACCCATATACCCCCCCCCGGTGGGGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTa < 6:389901/135‑1 (MQ=255) cggggCCCTGGCGCGCAACCTGCTGC‑TGGTGGAACAGAGCGGCGTGCGTGCGCACTTCAGCCAGATCACCCGCGCCCGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTa < 8:317746/133‑1 (MQ=255) cgggccccGGGCGCGCAACCGGCGGC‑TGGGGCAACCTCCCGGGGGGCGGGCGCACTTCAGCCCGACCCCCCGCGCCGGGGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTa < 2:396533/131‑1 (MQ=255) cGTGGCCCTGGCGCGCAACGTGCTGC‑GGGTGGAACTGAGCGGCGGGCGTGCGCACTTCAGCCATATCACCAGCGCCCGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTa < 4:304723/136‑1 (MQ=255) cGTGGCCCTGGCGCGCAACCTGCTGC‑TGGGGGAACAGAGCGGCGTGCGTGCGCACTTCAGCCAGATCACCAGCGCCCGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTa < 7:65981/136‑1 (MQ=255) cGTGGCCCTGGCGCGAAACCTGCTGC‑TGGTGGAACAGAGCGGCGTGCGTGCGCACTTCAGCCAGATCACCAGCGCCCGGGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTa < 3:93616/136‑1 (MQ=255) cccTGGCGCGCAACCTGCTGC‑TGGTGGAACAGAGCGGCGTGCGTGCGCACGTCAGCCACATAACCACCCCCCGTTGCGCCCCGCGGCACGCCCCCGCCCACGCCGTGGGGCTGCCGGTAAACCCCGATTTAtcg > 8:287091/1‑134 (MQ=255) ggCGCGAAACCGCCTGC‑TGGTGCAACCTCGCGGGGTGCTTGCGAACTCCTCCCCTATCACCCCCGCCCGGGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTAc < 8:324670/136‑1 (MQ=255) gcgcgcAACCTGCTGC‑TGGTGGAACAGAGCGGCGTGCGTGCGCACTTCAGCCAGATCACCAGCGCCCGTGGCGCGCGGCTGATCGCCCAGGCCCCGGCCTTGGGCCTGCCGGGAACCGCCGATGTAGCGCTGTAcc > 1:256237/1‑136 (MQ=255) cgaacccTGCTGCGTGGT‑GAACATAGCGGCTTGCGGGCGCACTTCACCCAGACCACCCGCGCCCGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGc < 4:303250/131‑1 (MQ=255) cAACCTGCTGC‑TGGTGGAACAGAGCGGCGTGCGGGCGCACTTCAGCCAGATCACCAGCGCCCGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTg < 1:351070/136‑1 (MQ=255) aCCTGGTGG‑GGGTGCAACAGCGGGGGGTGCGGGCGCATTCCAGCCAGAGCCCCCGGGCCCGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGAt < 4:290884/136‑1 (MQ=255) gcggggGGCGGGCGCACTCCCGCCCCACCCCCCGCGCCCGGGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTgcg < 6:2826/136‑1 (MQ=255) cggggTGCGTGCCCACTTCCCCCACATCCCCAGCGCCCGGGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTgcgc < 5:14696/136‑1 (MQ=255) ggcgTGCGTGCGCACTTCAGCCAGATCACCCCCGCCCCTGGCGCGCGGCTGATCGCCCCGGCCCCCGCCGTGGGCCTGCCCGGAACCGCCGCTGTAGCGCTGTACCCCCTGATCCTCACGGGAGAGTCGCTGcgcg > 8:60286/1‑136 (MQ=255) ggcgTGCGGGCGCACTTCCGCCCGCTCACCCGCGCCCGGGGCGCGCGGCTGATCGCCCCCGCCCCGGCCTTGGGCCTGCCGGTAACCGCCCCTGTAGCGCTGTACCAGCTGCTACTCACGGCCGCGTCgcggcggg > 6:190152/1‑134 (MQ=255) cgtgcgtgCGCCCGTAAGCCAGATCACCCGCCCCCGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCCGGAACCGCCGATGTAGCGCGGTACCAGCTGATACGCACGGGCGCGTCGCGGcgcgcg > 4:261488/1‑134 (MQ=255) gtgcgtgcGCACTGCAGCCAGATCACCAGCGCCCGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGt < 8:83605/136‑1 (MQ=255) gtgcgggcGCACTTCAGCCAGATCACCCGCGCCCGGGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGt < 6:130176/136‑1 (MQ=255) gggggtgcgCAGTTCACCATAACCACCCGCGCCGGGGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGt < 2:357631/132‑1 (MQ=255) gggggtgcgAAGTTCCGCCAGATCACCCGCGCCGGGGGGGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGt < 6:319702/132‑1 (MQ=255) gggcgtgcgCACTTCCCCCATAACCCCCGGGCCGGTGGGGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGt < 3:92051/134‑1 (MQ=255) gggcgggcgCACTTCCGCCAGACCCCCCGCGCCCGGGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGt < 3:177453/134‑1 (MQ=255) gcgtgcgCACTTAAGCCCGATCACCAGCCCCCGTGGCGCGCGGCTGATAGCCCAGGCCCAGGCCTTGGGCCTGCCGGGAACCGCCGATGTAGCGCGGTACCACCAGCTCCTCCCGGCCGAGTCGCTGCGCGAGGtc > 6:297875/1‑136 (MQ=255) tgcgCACTTCAGCCAGATCACCAGCGCCCGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGTTCTcc < 7:110464/136‑1 (MQ=255) cACCAGCGCCCGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGTTCTCCAGCCTGTACCACGTGCAg > 7:96965/1‑136 (MQ=255) cACCAGCGCCCGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGTTCTCCAGCCTGTACCACGTGCAg > 5:151046/1‑136 (MQ=255) cACCAGCGCCCGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGAGCGAGTTCTCCAGCCTGTACCACGTGCAg < 2:75428/136‑1 (MQ=255) aCCTGCGCCCGGGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGAGCGAGTTCTCCAGCCTGTACCACGTGCAg < 2:75422/135‑1 (MQ=255) aCCAGCGCCCGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGTTCTCCAGCCTGTACCACGTGCAgc > 8:149807/1‑136 (MQ=255) ccAGCGCCCGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGTTCTCCAGCCTGTACCACGTGCAgcc > 1:334039/1‑136 (MQ=255) gTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGGTCTCCAGCCTGTACCCCGTGCAGCCGCCGCAgcg > 2:115720/1‑136 (MQ=255) | AGGTGCCATGGCCAGCTTCCTCGGCCTGCCGGGCATCCCGGAGAGCGCCGAAACCGTGGCCCTGGCGCGCAACCTGCTGC‑TGGTGGAACAGAGCGGCGTGCGTGCGCACTTCAGCCAGATCACCAGCGCCCGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGTTCTCCAGCCTGTACCACGTGCAGCCGCCGCTGCG > ACB143/5693051‑5693317 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |