Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | ACB143 | 2,308,304 | 0 | C | G | 31.4% | 57.6 / 10.6 | 35 | A230P (GCC→CCC) | fucA | L‑fuculose phosphate aldolase |
Reads supporting (aligned to +/- strand): ref base C (6/18); new base G (11/0); total (17/18) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.97e-05 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
GCACCTTTGCCGTTGTTGAGGAAAGAGTACAGCTTCGATCAGCCCAGGCAGTCGCCATGGGCACGCAAGGCACGGCGCGCGTAGTAGCTGAAGGCAGCACCGTGACGTTTGGGGGTGGAAATCCAGTCGTGGGCCTCTTTGCCCAGTGCTTCGGGGATGGGGCGGATGTCACCGGCGCCCATGGCCAGCAGTTGCATCTTTGCTGCGCGCTCGAACAGCAGAGCGAGCACGCAGGCTTCCTCGATCGAACGCCCAGCGATCAGC > ACB143/2308171‑2308434 | gCACCTTTGCCGTTGTTGAGGAAAGAGTACAGCTTCGATCAGCCCAGGCAGTCGCCATGGGCACGCAAGGCACGGCGCGCGTAGTAGCTGAAGGCAGCACCGTGACGTTTGGGGGTGGAAATCCAGTCGTGGGcc < 8:272622/135‑1 (MQ=255) aCCTTTGCCGTTGTTGAGGAAAGAGTACAGCTTCGATCAGCCCAGGCAGTCGCCATGGGCACGCAAGGCACGGCGCGCGTAGTAGCTGAAGGCAGCACCGTGACGTTTGGGGGTGGAAATCCAGTCGTGGGCctc > 7:185526/1‑135 (MQ=255) tttGCAGTTGTTGAGGAAAGAGTACAGCTTCGATCAGCCCAGGCAGTCGCCATGGGCACGCAAGGCACGGCGCGCGTAGTAGCTGAAGGCAGCACCGTGACGTTTGGGGGTGGAAATCCAGTCGTGGGCCTCttt < 4:78165/135‑1 (MQ=255) gCCGTTGTTGAGGAAAGAGTACAGCTTCGATCAGCCCAGGCAGTCGCCATGGGCACGCAAGGCACGGCGCGCGTAGTAGCTGAAGGCAGCACCGTGACGTTTGGGGGTGGAAATCCAGTCGTGGGCCTCTTTg < 3:62452/133‑1 (MQ=255) gCCGTTGTTGAGGAAAGAGTACAGCTTCGATCAGCCCAGGCAGTCGCCATGGGCACGCAAGGCACGGCGCGCGTAGTAGCTGAAGGCAGCACCGTGACGTTTGGGGGTGGAAATCCAGTCGTGGGCCTCTTTGc < 4:143007/134‑1 (MQ=255) gCCGTTGTTGAGGAAAGAGTACAGCTTCGATCAGCCCAGGCAGTCGCCATGGGCACGCAAGGCACGGCGCGCGTAGTAGCTGAAGGCAGCACCGTGACGTTTGGGGGTGGAAATCCAGTCGTGGGCCTCTTTGc < 5:143381/134‑1 (MQ=255) ccGTTGTTGAGGAAAGAGTACAGCTTCGATCAGCCCAGGCAGTCGCCATGGGCACGCAAGGCACGGCGCGCGTAGTAGCTGAAGGCAGCACCGTGACGTTTGGGGGTGGAAATCCAGTCGTGGGCCTCTTTGcc < 3:81243/134‑1 (MQ=255) gAGGAAAGAGTACAGCTTCGATCAGCCCAGGCAGTCGCCATGGGCACGCAAGGCACGGCGCGCGTAGTAGCTGAAGGCAGCACCGTGACGTTTGGGGGTGGAAATCCAGTCGTGGGGCTCTTTTGCCAGTGCGTc > 3:329466/1‑135 (MQ=255) gagTACAGCTTCGATCAGCCCAGGCAGTCGCCATGGGCACGCAAGGCACGGCGCGCGTAGTAGCTGAAGGCAGCACCGTGACGTTTGGGGGTGGAAATCCAGTCGTGGTCCTCTTTGCCCAGTGCTTCGGGGATg < 4:251601/135‑1 (MQ=255) aCAGCTTCGATCAGCCCAGGCAGTCGCCATGGGCACGCAAGGCACGGCGCGCGTAGTAGCTGAAGGCAGCACCGTGACGTTTGGGGGTGGAAATCCAGTCGTGGGGCTCTTTGGCCAGTGCTTCGGGGATTGGGc > 3:77773/1‑135 (MQ=255) tCAGCCCAGGCAGTCGCCATGGGCACGCAAGGCACGGCGCGCGTAGTAGCTGAAGGCAGCACCGTGACGTTTGGGGGTGGAAATCCAGTCGTGGGGCTCTTTGGCCAGTGCTTGGGGGATGGGGCGGCTGTGAcc > 4:172499/1‑135 (MQ=255) aGCCCAGGCAGTCGCCATGGGCACGCAAGGCACGGCGCGCGTAGTAGCTGAAGGCAGCACCGTGACGTTTGGGGGTGGAAATCCAGTCGTGGGGGGGGTTTCCCAGGGGTTGGGGGAAGGGGCGGGTGTGAcccc > 3:182620/1‑133 (MQ=255) aGCCCAGGCAGTCGCCATGGGCACGCAAGGCACGGCGCGCGTAGTAGCTGAAGGCAGCACCGTGACGTTTGGGGGTGGAAATCCAGTCGTGGGGCGAGTTGGGCAGTGCGGGGGGGTTGGGGCGGCTGGGACCgg > 3:87372/1‑135 (MQ=255) aGCCCAGGCAGTCGCCATGGGCACGCAAGGCACGGCGCGCGTAGTAGCTGAAGGCAGCACCGTGACGTTTGGGGGTGGAAATCCAGTCGTGGGCCTCGTTGGCCACGGCGTCGGGGATGGGGCGGCTGTCACCgg > 6:78065/1‑135 (MQ=255) cccAGGCAGTCGCCATGGGCACGCAAGGCACGGCTCGCGTATTAGCTGAAGGCAGCACCGTGACGTTTGGGGGTGGAAATCCAGTCGTGGGCCTCTTTGACCAGTGCTTCGGGGATGGGGCGGATGTCACCGgcg < 4:277076/135‑1 (MQ=255) aGGCAGTCGCCATGGGCACGCAAGGCACGGCGCGCGTAGTAGCTGAAGGCAGCACCGTGACGTTTGGGGGTGGAAATCCAGTCGTGGGGCGGGGTGCCCCGTGGTGGGGGGAGGGGGGGGGTGTGACCGGGGcc > 3:202847/1‑134 (MQ=255) aGTCGCCATGGGCACGCAAGGCACGGCGCGCGTAGTAGCTGAAGGCAGCACCGTGACGTTTGGGGGTGGAAATCCAGTCGTGGGCCTCTTTGCCCAGTGCTTCGGGGATGGGGCGGATGTCACCGGCGCCCATgg < 7:292949/135‑1 (MQ=255) gTCGCCATGGGCACGCAAGGCACGGCGCGCGTAGTAGCTGAAGGCAGCACCGTGACGTTTGGGGGTGGAAATCCAGTCGTGGGGCGGTTTGCCCAGTGCTTGGGGGCTGGGGGGGGGGTGACCCGCGccccaggc > 5:291247/1‑130 (MQ=255) ccATGGGCACGCAAGGCACGGCGCGCGTAGTAGCTGAAGGCAGCACCGTGACGTTTGGGGGTGGAAATCCAGTCGTGGGGCGCGTTTCCCAGTGCGTCGGGGATGGGGGGGATGTGACCGGCGCCCATGGCccgc > 4:142250/1‑135 (MQ=255) ccATGGGCACGCAAGGCACGGCGCGCGTAGTAGCTGAAGGCAGCACCGTGACGTTTGGGGGTGGAAATCCAGTCGTGGGCCGCTTTGCCCCGTGGGTAGGGGGTGGGGGGGCTGTCACCGGCGCCCCAGGCcagc > 8:302916/1‑135 (MQ=255) cATGGGCACGCAAGGCACGGCGCGCGTAGTAGCTGAAGGCAGCACCGTGACGTTTGGGGGTGGAAATCCAGTCGTGGGGCTCTTTGGCCAGTGCTTGGGGGGTGGGGGGGTTGTCAACGGCGCCCAAGGCcagca > 2:215465/1‑135 (MQ=255) aGGCACGGCGCGCGTAGTAGCTGAAGGCAGCACCGTGACGTTTGGGGGTGGAAATCCAGTCGTGGGCCTCTTTGCCCAGTGCTTCGGGGATGGGGCGGATGTCACCGGCGCCCATGGCCAGCAGTTGCATCTTtg < 3:2356/135‑1 (MQ=255) cgcgcgTAGTAGCTGAAGGCAGCACCGTGACGTTTGGGGGTGGAAATCCAGTCGTGGGCCTCTTTGCCCAGTGCTTCGGGGATGGGGCGGATGTCACCGGCGCCCATGGCCAGCAGTTGCATCTTTGCTgcgcgc < 7:201125/135‑1 (MQ=255) cgcgcgTAGTAGCTGAAGGCAGCACCGTGACGTTTGGGGGTGGAAATCCAGTCGTGGGCCTCTTTGCCCAGTGCTTCGGGGATGGGGCGGATGTCACCGGCGCCCATGGCCAGCAGTTGCATCTTTGCTgcgcgc < 8:303371/135‑1 (MQ=255) cgcgTAGTAGCTGAAGGCAGCACCGTGACGTTTGGGGGTGGAAATCCAGTCGTGGGGCGCTTTGGCCAGTGCGTGGGGGGTGGGGCGGATGTCACCCGCGCCCCTGGCCAGCAGGTGGCTCGTTTATgcgcgcgc > 2:86269/1‑133 (MQ=255) gcgTAGTAGCTGAAGGCAGCACCGTGACGTTTGGGGGTGGAAATCCAGTCGTGGGCCTCTTTGCCCAGTGCTTCGGGGATGGGGCGGATGTCACCGGCGCCCATGGCCAGCAGTTGCATCTTTGCTGCGCGCTCg < 5:114749/135‑1 (MQ=255) gcagcaCCGTGACGTTTGTGGGTGGACATCCAGTGGTGGGCCTCTTTGCCCAGTGCTTCGGGGATGGGGCGGATGTCACCGGCGCCCAGGGCCAGCAGTTGGATCGTTGCTGCGCGCTCGAACAGCAgagcgagc < 5:33981/135‑1 (MQ=255) gcagcaCCGTGACGTTTGGGGGTGGAAATCCAGTCGTGGGCCTCTTTGCCCAGTGCTTCGGGGATGGGGCGGATGTCACCGGCGCCCATGGCCAGCAGTTGCATCTTTGCTGCGCGCTCGAACAGCAgagcgagc < 8:328990/135‑1 (MQ=255) agcaCCGTGACGTTTGGGGGTGGAAATCCAGTCGTGGGCCTCTTTGCCCCGGGCTTGGGGGGTGGGGCGGGTGTCACCGGCGCCCCTGGGCCGCCGTTGGCTCATTGCTGCGCGCGCGACCCGCAgcccgagccc > 2:338511/1‑133 (MQ=255) cGTGACGTTTGGGGGTGGAAATCCAGTCGTGGGCCGCTTTGCCCACTGCGTCGGGGATGGGGGGGCTGTCAACGGCGCCCATGGCCAGCCGTTGCATCTTTGCTGCGCGCGCCAAAACCACAGCGAGCACCCAgg > 3:227910/1‑135 (MQ=255) cGTTTGGGGGTGGAAATCCAGTCGTGGGCCACGTTGCCCAGTGCTTCGGGGATGGGGCGGATGTCACCGCCGCCCAAGGCCCGCAGTTGCATCTTTTCTTCGCCCGCCAAAACCAGATCGAGCACCCACGCGTcc > 8:236803/1‑135 (MQ=255) gggggTGGAAATCCAGTCGTGGGGCTCTTTGCCCAGGGCGTGGGGGGTGGGGGGGCTGTCACCGGCGCCCATGGCCAGCAGTTGCATCTTTTCTGCGCGCTCGCACAGCAGAGCGAGCACGCCGGCGTCCtcgat > 1:228696/1‑135 (MQ=255) tGGAAATCCAGTCGTGGGCCTCTTTGCCCAGTGCTTCGGGGATGGGGCGGATGTCACCGGCGCCCATGGCCAGCAGTTGCATCTTTGCTGCGCGCTCGAACAGCAGAGCGAGCACGCAGGCTTCCTCGATCGAAc < 4:144322/135‑1 (MQ=255) gTCGTGGGCCTCTTTGCCCTGTGCTTCGGGGATGGGGCGGATGTCACCGGCGCCCATGGCCAGCAGTTGCATCTTTGCTGCGCGCTCGAACAGCAGAGCGAGCACGCAGGCTTCCTCGATCGAACGCCCAGCGAt < 6:179049/135‑1 (MQ=255) gTCGTGGGCCTCTTTGCCCAGTGCTTCGGGGATGGGGCGGATGTCACCGGCGCCCATGGCCAGCAGTTGCATCTTTGCTGCGCGCTCGAACAGCAGAGCGAGCACGCAGGCTTCCTCGATCGAACGCCCAGCGAt < 8:65310/135‑1 (MQ=255) tGGGCCTCTTTGGCCAGTGCTTCTGGGATGGGGCTGAGGTCACCGGCGCCCATGGCCAGCAGTTGGATATTTGCTGGGCGCTCGAACAGCAGAGCGAGCAGGCAGGATTCCTCGATCGAACGCCCAGCGATctgc < 2:162394/135‑1 (MQ=255) | GCACCTTTGCCGTTGTTGAGGAAAGAGTACAGCTTCGATCAGCCCAGGCAGTCGCCATGGGCACGCAAGGCACGGCGCGCGTAGTAGCTGAAGGCAGCACCGTGACGTTTGGGGGTGGAAATCCAGTCGTGGGCCTCTTTGCCCAGTGCTTCGGGGATGGGGCGGATGTCACCGGCGCCCATGGCCAGCAGTTGCATCTTTGCTGCGCGCTCGAACAGCAGAGCGAGCACGCAGGCTTCCTCGATCGAACGCCCAGCGATCAGC > ACB143/2308171‑2308434 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |