New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	ACB143	2170758 =	64 (1.350)	23 (0.490)	19/240	NT	36.1%	intergenic (‑773/‑64)	arsR1/CJ019_02060	Arsenic resistance transcriptional regulatorArsR1/IS1182 family transposase ISPpu16
	?	ACB143	= 5563631	18 (0.380)					coding (1046/1902 nt)	mutL_2	DNA mismatch repair protein MutL

GACGTAGTCGTCCAGGCACTCCGGCAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  ACB143/2170893‑2170758 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTTTCCAATGGTGGCAGCGGCGCC  <  ACB143/5563631‑5563498                                                                                                                                                                                                                                                                                GACGTAGTCGTCCAGGCACTCCGGCAACAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGG                                                                                                                                        >  7:27385/1‑136  ACGTAGTCGTCCAGGCACTCCGGCAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATTATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGG                                                                                                                                        <  4:280511/135‑1  ACGTAGTCGTCCAGGCACTCCGGCAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGG                                                                                                                                        <  4:42437/135‑1              AGGCACTCCGGCAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACCTGAGCTGGT                                                                                                                           <  7:277551/136‑1                   CTCCGTCAGCAATGTAACCTGCGTTCGAGCCTCCCATTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACCTGAGCTGGTTCtga                                                                                                                      <  6:203869/136‑4                            CAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGGCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACCTGAGCTGGTTCGCCCCACCGGCC                                                                                                             <  8:159091/136‑1                                 TAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAG                                                                                                        >  6:293626/1‑136                                    CCTGCGGTCGAGCCTCACCTTCGATGAATCGCTTCATGAGTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCC                                                                                                     <  1:263679/136‑1                                           TCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGT                                                                                              >  8:154893/1‑136                                                 CTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGC                                                                                        <  7:61463/136‑1                                                 CTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGC                                                                                        <  6:257479/136‑1                                                  TCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCC                                                                                       >  1:67544/1‑136                                                          GATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGT                                                                                <  3:168411/135‑1                                                                  GCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCG                                                                        <  7:154893/135‑1                                                                      CATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGG                                                                   >  7:28271/1‑136                                                                           TTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCG                                                              <  3:112241/136‑1                                                                               CCCCACGGTCACGACGACCAGACGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACCTGAGCTGGCTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGG                                                          <  8:294121/136‑1                                                                                 CCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTG                                                        >  3:42279/1‑136                                                                                    CGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCGCTGGTTTAAATTCGCCTGGCCTCGCCGGTTCTT                                                     <  8:191116/136‑1                                                                                              GACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACCTGAGCGGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTC                                           <  8:296519/136‑1                                                                                                    AAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGACCAGCCTCGAGCCC                                     >  3:257108/1‑136                                                                                                    AAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGCGCCC                                     >  3:261527/1‑136                                                                                                              AACCGCGGGCGTTTTCACACAGTCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTC                           >  5:44839/1‑136                                                                                                                 CGCGGGCGTTTTCACACAGTCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTT                        >  1:95570/1‑136                                                                                                                   acGGCGTTTTCACACAGTCTGGTAAATTATATGGTTAGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTT                       >  6:212157/3‑135                                                                                                                   CGGGCGTTTTCACACAGTCTGGTACCTGAGCTGGTTCGCCCCACCGGCCCGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACACTCGTTTT                      >  8:106321/1‑136                                                                                                                                       GGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTTTCCAATGGTGGCAGCGGCGCC  >  6:221520/1‑136                                                                                                                                       GGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTTTCCAATGGTGGCAGCGGCGCC  >  2:102668/1‑136                                                                                                                                                                                                                                                                                GACGTAGTCGTCCAGGCACTCCGGCAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  ACB143/2170893‑2170758 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTTTCCAATGGTGGCAGCGGCGCC  <  ACB143/5563631‑5563498

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.