| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | ACB143 | 2170758 = | 64 (1.350) | 7 (0.150) | 5/240 | NT | 10.6% | intergenic (‑773/‑64) | arsR1/CJ019_02060 | Arsenic resistance transcriptional regulatorArsR1/IS1182 family transposase ISPpu16 |
| ? | ACB143 | 5869157 = | 55 (1.170) | coding (690/2280 nt) | ptsP | Phosphoenolpyruvate‑dependent phosphotransferasesystem | |||||
GCAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < ACB143/2170870‑2170758‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCGTCGATGTCATCGACGGTCTTGTCCGGGACCACTTCCAGGTCGGCCGGCGGCAACATCACCACCGCACGCCCCACCGCGGCACC > ACB143/5869157‑5869291 GCAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGCATGTCGTCGCGCACACCTTCCA < 3:48236/136‑1GCAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGCATGTCGTCGCGCACACCTTCCA < 7:211330/136‑1 ACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTGACGACGACCAGAAGGTTAGACAACCGCGTGCGTTTTCACACAGTCTGGCATGTCGTCGCGCACACCTTCCAGGGCGTTCTG < 8:253816/135‑1 TCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGCATGTCGTCGCGCCACCCGTCCAGGGCGTTCTGGAACAGCTT > 4:1637/1‑136 TCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTT > 4:306969/1‑136 ATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCGTCGATGTCAT < 5:209937/136‑1 GGGCGTTTTCACACAGTCTGGCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCGTCGATGTCATCGACGGTCTTGTCCGGGACCACTTCCAGGTCGGCCGGCGGCAACATCACCACC < 5:298701/136‑1 GGCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCGTCGATGTCATCGACGGTCTTGTCCGGGACCACTTCCAGGTCGGCCGGCGGCAACATCACCACCGCACGCCCCACCGCGGCAC > 8:160357/1‑136 GCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCGTCGATGTCATCGACGGTCTTGTCCGGGACCACTTCCAGGTCGGCCGGCGGCAACATCACCACCGCACGCCCCACCGCGGCACC < 5:239605/136‑1 GCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCGTCGATGTCATCGACGGTCTTGTCCGGGACCACTTCCAGGTCGGCCGGCGGCAACATCACCACCGCACGCCCCACCGCGGCACC < 5:300828/136‑1 GCAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < ACB143/2170870‑2170758‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCGTCGATGTCATCGACGGTCTTGTCCGGGACCACTTCCAGGTCGGCCGGCGGCAACATCACCACCGCACGCCCCACCGCGGCACC > ACB143/5869157‑5869291 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |