| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | ACB143 | 2170755 = | 130 (2.170) | 43 (0.740) | 30/254 | 0.5 | 40.6% | intergenic (‑770/‑67) | arsR1/CJ019_02060 | Arsenic resistance transcriptional regulatorArsR1/IS1182 family transposase ISPpu16 |
| ? | ACB143 | 2716447 = | 0 (0.000) | coding (185/846 nt) | rhaR_3 | HTH‑type transcriptional activator RhaR | |||||
GACGTAGTCGTCCAGGCACTCCGGCAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < ACB143/2170893‑2170755‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaccGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCTGGGCGCCCGACTCGATCACGGTGAATACATAGCCTTCGTGCACATGCGGGGCGAAGCGCTGCTGATAGTAGCGAGCGTGCAGCATCTCGACGTCG > ACB143/2716447‑2716578 GACGTAGTCGTCCAGGCACTCCGGCAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGG > 5:60570/1‑136GACGTAGTCGTCCAGGCACTCCGGCAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGG > 5:46013/1‑136GACGTAGTCGTCCAGGCACTCCGGCAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTAACACAGTCTGG > 8:299014/1‑136 ACGTAGTCGTCCAGGCACTCCGGCAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGG < 3:257113/135‑1 GTCGTCCAGGCACTCCGGCAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGACCGGT < 1:346723/136‑1 CAGGCACTCCGGCAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGACCGGT > 6:194599/1‑130 CAGGCACTCCGGCAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGACCGGT < 5:194599/130‑1 GGCAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGACCGGTGCCAGGTGCTCGCTGC > 1:60546/1‑136 GGCAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGACCGGTGCCAGGTGCTCGCTGC < 2:350813/136‑1 GGCAGAAATGTCACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGAATGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGACCGGTGCCAGGTGCTCGCTGC < 6:250533/136‑1 CAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTGTTCACACAGTCTGGACCGGTGCCAGGTGCTCGCTGCCG > 8:30114/1‑136 GCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGACCGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCG > 2:338675/1‑136 GTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGACCGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCT > 5:342843/1‑136 TCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGACCGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCTGG > 7:234983/1‑136 TCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGACCGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCTGG > 4:92320/1‑136 TCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGACCGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCTGG > 4:267886/1‑136 CGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGACCGGTGCCAGGTGCTCGCTCCCGCGGTGCCAGAAGCGCTGGG > 8:161210/1‑136 AGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGACCGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCTGGGCG > 7:319848/1‑136 CGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGACCGGGGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCTGGGCGCCCGACTCG < 3:12333/134‑1 GATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGACCGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCTGGGCGCCCGACTCGAT < 7:222116/135‑1 GATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGACCGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCTGGGCGCCCGACTCGAT < 1:372761/135‑1 AATCGCTTCATGATTGTCCCCACGGTCACGCCGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGACCGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCTGGGCGCCCGACTCGATCACG < 1:323310/135‑1 AATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGACCGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCTGGGCGCCCGACTCGATCACG < 2:290493/135‑1 CTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGACCGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCTGGGCGCCCGACTCGATCACGGTGAAT < 5:93880/136‑1 CCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGACCGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCTGGGCGCCCGACTCGATCAC > 2:117366/1‑117 CCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGACCGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCTGGGCGCCCGACTCGATCAC < 1:117366/117‑1 CCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGACCGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCTGGGCGCCCGACTCGATCACGGTGAATACATAGCCTTCGTG > 6:307688/1‑136 CCACGGTCACGACAACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGCCCGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCTGGGCGCCCGACTCGATCACGGTGAATACATAGCCTTCGTG > 4:272323/1‑136 CGGTCACGACGCCCAGACGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGACCGGTGCCAGGTGCTCGCTGCCGCGGGGCCAGAAGCGCTGGGCGCCCGACTCGATCACGGTGAATACATAGCCTTCGTGCAC < 7:49934/136‑1 GTCACTACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGACCGGTGCCAGTTGCTCGCTGCCGCGGTGCCAGAAGCGCTGGGCGCCCGACTCGATCACGGTGAATACATAGCCTTCGTGCACAT < 6:44407/136‑1 GACGCCAAGAAGGTTACACAACCGCGGGCGTTTTCACACAGTCTGGACCGGTGCAAGGTGCTCGCGGCCGCGGTGCCAGAAGCGCTGGGCGCCCGACTCGATCACGGTGAATACATAGCCTTCGTGCACATGCGGG < 1:315570/136‑1 GACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGACCGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCTGGGCGCCCGACTCGATCACGGTGAATACATAGCCTTCGTGCACATGCGGG < 1:6506/136‑1 GACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGACCGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCTGGGCGCCCGACTCGATCACGGTGAATACATAGCCTTCGTGCACATGCGGG > 4:301642/1‑136 CCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGACCGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCTGGGCGCCCGACTCGATCACGGTGAATACATAGCCTTCGTGCACATGCGGGGCGAA < 8:93413/136‑1 CCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGACCGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCTGGGCGCCCGACTCGATCACGGTGAATACATAGCCTTCGTGCACATGCGGGGCGAA < 3:113410/136‑1 CCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGACCGGCGCCAGGTGCGCGCTGCCGCGGTGCCAGAAGCGCTGGGCGCCCGACTCGATCACGGTGAATACATAGCCTTCGTGCACATGCGGGGCGAA < 7:299014/136‑1 AAGGTTAGACACCCGCGGGCGTTTTCACACAGTCTGGACCGGTGCCAGGTGCTCGCTGCCGCGGGGCCAGAAGCGCTGGGCGCCCGACTCGATCACGGTGAATACATAGCCTTCGTGCACATGCGGGGCGAAGCGC < 6:324403/136‑1 GGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGACCGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCTGGGCGCCCGACTCGATCACGGTGAATACATAGCCTTCGTGCACATGCGGGGCGAAGCGCTG < 5:340230/136‑1 GACAACCGCGGGCGTTTTCACACAGTCTGGACCGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCTGGGCGCCCGACTCGATCACGGTGAATACATAGCCTTCGTGCACATGCGGGGCGAAGCGCTGCTGAT < 1:234329/136‑1 ACAACCGCGGGCGTTTTCACACAGTCTGGACCGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCTGGGCGCCCGACTCGATCACGGTGAATACATAGCCTTCGTGCACATGCGGGGCGAAGCGCTGCTGA > 7:194266/1‑134 CGGGCGTTTTCACACAGTCTGGACCGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCTGGGCGCCCGACGCGATCACGGTGAATACATAGCCTTCGTGCACATGCGGGGCGAAGCGCTGCTGATAGTAGC > 2:136686/1‑134 GGGCGTTTTCACACAGTCTGGACCGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCTGGGCGCCCGACTCGATCACGGTGAATACATAGCCTTCGTGCACATGCGGGGCGAAGCGCTGCTGATAGTAGCGAG > 2:239497/1‑136 CACACAGTCTGGACCGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCTGGGCGCCCGACTCGATCACGGTGAATACATAGCCTTCGTGCACATGCGGGGCGAAGCGCTGCTGATAGTAGCGAGCGTGCAGC < 7:278796/135‑1 CACACAGTCTGGACCGGGGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCTGGGCGCCCGACTCGATCACGGTGAATACATAGCCTTCGTGCACATGCGGGGCGAAGCGCTGCTGATAGTAGCGAGCGTGCAGC < 7:47978/135‑1 GGACCGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCTGGGCGCCCGACTCGATCACGGTGAATACATAGCCTTCGTGCACATGCGGGGCGAAGCGCTGCTGATAGTAGCGAGCGTGCAGCATCTCGACGTC > 5:303983/1‑136 GGACCGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCTGGGCGCCCGACTCGATCACGGTGAATACATAGCCTTCGTGCACATGCGGGGCGAAGCGCTGCTGATAGTAGCGAGCGTGCAGCATCTCGACGTC > 3:290736/1‑136 GGACCGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCTGGGCGCCCGACTCGATCACGGTGAATACATAGCCTTCGTGCACATGCGGGGCGAAGCGCTGCTGATAGTAGCGAGCGTGCAGCATCTCGACGTC > 1:36202/1‑136 GACCGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCTGGGCGCCCGACTCGATCACGGTGAATACATAGCCTTCGTGCACATGCGGGGCGAAGCGCTGCTGATAGTAGCGAGCGTGCAGCATCTCGACGTCG < 2:60546/136‑1 GACCGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCTGGGCGCCCGACTCGATCACGGTGAATACATAGCCTTCGTGCACATGCGGGGCGAAGCGCTGCTGATAGTAGCGAGCGTGCAGCATCTCGACGTC < 2:293105/135‑1 GACGTAGTCGTCCAGGCACTCCGGCAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < ACB143/2170893‑2170755‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaccGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCTGGGCGCCCGACTCGATCACGGTGAATACATAGCCTTCGTGCACATGCGGGGCGAAGCGCTGCTGATAGTAGCGAGCGTGCAGCATCTCGACGTCG > ACB143/2716447‑2716578 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |