New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	ACB143	2170758 =	122 (2.030)	33 (0.550)	24/260	1.0	34.9%	intergenic (‑773/‑64)	arsR1/CJ019_02060	Arsenic resistance transcriptional regulatorArsR1/IS1182 family transposase ISPpu16
	?	ACB143	5869157 =	2 (0.030)					coding (690/2280 nt)	ptsP	Phosphoenolpyruvate‑dependent phosphotransferasesystem

GGCAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  ACB143/2170871‑2170758 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCGTCGATGTCATCGACGGTCTTGTCCGGGACCACTTCCAGGTCGGCCGGCGGCAACATCACCACCGCACGCCCCACCGCGGCAC  >  ACB143/5869157‑5869290                                                                                                                                                                                                                                                          GGCAGAAATGTAACCTGCGTTCGAGCCTAACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCTCGTGCGTTTTCACACAGTCTGGCATGTCGTCGCGCACACCTTC                                                                                                                   >  5:132319/1‑135  GCAGCAATGTAACCTGCGTTCTAGCCTCACCTTCGATGACTCTCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGCATGTCGTCGCGCACACCTTCCA                                                                                                                 <  7:239003/136‑1  GCAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGCATGTCGTCGCGCACACCTTCCA                                                                                                                 <  6:139186/136‑1  GCAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGCATGTCGTCGCGCACACCTTC                                                                                                                   >  2:291093/1‑134                  CGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAG                                                                                                 <  1:24538/136‑1                    TTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCT                                                                                               >  3:176307/1‑136                    TTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGAAGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGCATGTCGTCGCGCACACCAACCAGGGCGTTCAGGAACAGCa                                                                                               >  4:311395/1‑135                     TCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTT                                                                                              >  3:101733/1‑136                       GAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGA                                                                                            <  8:268557/136‑1                                      TGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCGTCCATGT                                                                             >  3:151832/1‑136                                         ATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCGTCGATGTCAT                                                                          <  8:58151/136‑1                                         ATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCGTCGATGTCAT                                                                          <  8:221167/136‑1                                                         CCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCGTCGATGTCATCGACGGTCTTGTCCGG                                                          <  8:14492/136‑1                                                           CCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCGTCGATGTCATCGACGGTCTTGTCCGGGA                                                        >  6:231453/1‑136                                                           CCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCGTCGATGTCATCGACGGTCTTGTCCGG                                                          <  2:71982/134‑1                                                           CCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCGTCGATGTCATCGACGGTCTTGTCCGG                                                          <  3:264889/134‑1                                                           CCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCGTCGATGTCATCGACGGTCTTGTCCGG                                                          >  4:264889/1‑134                                                           CCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCGTCGATGTCATCGACGGTCTTGTCCGG                                                          >  1:71982/1‑134                                                                GTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCGTCGATGTCATCGACGGTCTTGTCCGGGACCCCT                                                   >  6:280906/1‑136                                                                      ACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCGTCGATGTCATCGACGGTCTTGTCCGGGACCACTTCCAGG                                             >  5:165706/1‑136                                                                               agggtcGACAACCGCGGGCGTTTTCACACAGTCTGGCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCGTCGATGTCATCGACGGTCTTGTCCGGGACCACTTCCAGGTCGGCCGGC                                    <  2:346409/130‑1                                                                                      ACAACCGCGGGCGTTTTCACACAGTCTGGCATGTCGTCGCGCCCACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCGTCGATGTCATCCACGGTCTTGTCCGGGACCACGTACAGGTCGGCCGGCGGCAAC                              >  1:344614/1‑135                                                                                       CAACCGCGGGCGTTTTCACACAGTCTGGCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCG                                                                                    >  7:241104/1‑80                                                                                       CAACCGCGGGCGTTTTCACACAGTCTGGCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCG                                                                                    <  8:241104/80‑1                                                                                        AACCGCGGGCGTTTTCACACAGTCTGGCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCGTCGATGTCATCGACGGTCTTGTCCGGGACCACTTCCAGGTCGGCCGGCGGCAACATC                           <  5:281409/136‑1                                                                                              GGGCGTTTTCACACAGTCTGGCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCGTCGATGTCATCGACGGTCTTGTCCGGGACCACTTCCAGGTCGGCCGGCGGCAACATCACCACC                     >  2:125300/1‑136                                                                                              GGGCGTTTTCACACAGTCTGGCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCGTCGATGTCATCGACGGTCTTGTCCGGGACCACTTCCAGGTCGGCCGGCGGCAACATCACCACC                     <  7:196218/136‑1                                                                                              GGGCGTTTTCACACAGTCTGGCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCGTCGATGTCATCGACGGTCTTGTCCGGGACCACTTCCAGGTCGGCCGGCGGCAACATCACCACC                     <  2:21243/136‑1                                                                                               GGCGTTTTCACACAGTCTGGCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCGTCGATGTCATCGACGGTCTTGTCCGGGACCACTTCCAGGTCGGCCGGCGGCAACATCACCCCCG                    >  6:359879/1‑136                                                                                                   TTTTCACACAGTCTGGCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCGTCGATGTCATCGACGGTCTTGTCCGGGACCACTTCCAGGTCGGCCGGCGGCAACATCACCACCGCACG                <  2:176520/136‑1                                                                                                   TTTTCACACAGTCTGGCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCGTCGATGTCATCGACGGTCTTGTCCGGGACCACTTCCAGGTCGGCCGGCGGCAACATCACCACCGCACG                <  1:153743/136‑1                                                                                                               CTGGCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCGTCGATGTCATCGACGGTCTTGTCCGGGACCACTTCCAGGTCGGCCGGCGGCAACATCACCACCGCACGCCCCCCCGCGGC    >  1:187090/1‑136                                                                                                                 GGCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCGTCTATGTCATCGACGGTCTTGTCCGGGACCACTTCCAGGTCGGCCGGCGGCAACATCACCACCGCACGCCCCACCGAGGCAC  >  4:40063/1‑136                                                                                                                  GCATGTCGTCGAGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCGTCGATGTCATCGACGGTCTTGTCCGGGACCACTTCCAGGTCGGCCGGCGGCAACAGCACCACCGCACGCCCCACCGCGGCAC  <  1:260995/135‑1                                                                                                                                                                                                                                                          GGCAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  ACB143/2170871‑2170758 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCGTCGATGTCATCGACGGTCTTGTCCGGGACCACTTCCAGGTCGGCCGGCGGCAACATCACCACCGCACGCCCCACCGCGGCAC  >  ACB143/5869157‑5869290

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.