| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | ACB143 | = 2172438 | 207 (3.450) | 38 (0.660) | 23/252 | 1.0 | 27.6% | intergenic (+180/+88) | CJ019_02060/CJ019_02061 | IS1182 family transposase ISPpu16/hypothetical protein |
| ? | ACB143 | = 2716441 | 0 (0.000) | coding (191/846 nt) | rhaR_3 | HTH‑type transcriptional activator RhaR | |||||
CGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > ACB143/2172306‑2172438‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcgGCAGCATGGTGCTGATCAACCCCGACGAACTGCATACCGGCGCTACGGCCCATGAAGCCGGCTGGCGTTATCGCGGCTTCTATCCCGAGCACGAGCGGGTGACCGGTGTGCTTGACGAACTGGAACTGGG < ACB143/2716441‑2716312 cgtCTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGGCA < 4:135833/133‑1cgtCTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGACAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGGCA < 3:56010/133‑1 CTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGGCAGCA > 3:61110/1‑136 CACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGGCAGCATG > 5:136827/1‑136 GCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGGCAGCATGGTGCTG < 1:245665/136‑1 GCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGGCAGCATGGTGCT < 5:317057/135‑1 CACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGGCAGCATGGTGCTGAT < 6:136827/136‑1 CATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGGCAGCATGGTGCTGATCA < 1:239118/136‑1 CGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGGCAGCATGGTGCTGATCAACC < 8:74486/135‑1 CCCCAGCACGGCGATTTGAGCTAAAGCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGGCGGCAGCATGGTGCTGATCAACCCCG < 2:215977/136‑1 CCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGGCAGCATGGTGCTGATCAACCCCGAC < 3:136350/136‑1 GATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGGCAGCATGGTGCTGATCACCCCCGACGAACTGCATA > 1:298186/1‑136 GATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGGCAGCATGGTGCTGATCAACCCCGACGAACTGCATA > 3:364096/1‑136 TTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGGCAGCATGGTGCTGATCAACCCCGACGAACTGCATACC > 4:248413/1‑136 GCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGGCAGCATGGTGCTGATCAACCCCGACGAACTGCATACCGGCGCTACGGCCCAT < 2:363609/136‑1 AATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGGCAGCATGGTGCTGATCAACCCCGACGAACTGCATACCGGCGCTACGGCCCATG > 6:259336/1‑135 GCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGGCAGCATGGTGCTGATCAACCCCGACGAACTGCATACCGGCGCTACGGCCCATGAAGCCGGCTGGCGTTAT < 3:25911/135‑1 GCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGGCAGCATGGTGCTGATCAACCCCGACGAACTGCATACCGGCGCTACGGCCCATGAAGCCGGCTGGCGTTAT < 5:333510/135‑1 GCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGGCAGCATGGTGCTGATCAACCCCGACGAACTGCATACCGGCGCTACGGCCCATGAAGCCGGCTGGCGTTAT < 5:259336/135‑1 GCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGGCAGCATGGTGCTGATCAACCCCGACGAACTGCATACCGGCGCTACGGCCCATGAAGCCGGCTGGCGTTAT < 2:146589/135‑1 GCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGGCGGCAGCATGGTGCTGATCAACCCCGACGAACTGCATACCGGCGCTACGGCCCATGAAGCCGGCTGGCGTTAT < 1:38198/135‑1 TGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGGCAGCATGGTGCTGATCAACCCCGACGAACTGCATACCGGCGCTACGGCCCATGAAGCCGGCTGGCGTTATCGCGGCTTCTATCCCGAGCA > 3:94276/1‑136 CGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGGCAGCATGGTGCTGATCAACCCCGACGAACTGCATACCGGCGCTACGGCCCATGAAGCCGGCTGGCGTTATCGCGGCTTCTATCCCGAGCAC < 2:299420/135‑1 CGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGGCAGCATGGTGCTGATCAACCCCGACGAACTGCATACCGGCGCTACGGCCCATGAAGCCGGCTGGCGTTATCGCGGCTTCTATCCCGAGCAC < 1:357169/135‑1 CGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGGCAGCATGGTGCTGATCAACCCCGACGAACTGCATACCGGCGCTACGGCCCATGAAGCCGGCTGGCGTTATCGCGGCTTCTATCCCGAGCAC < 8:153513/135‑1 CGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGGCAGCATGGTGCTGATCAACCCCGACGAACTGCATACCGGCGCTACGGCCCATGAAGCCGGCTGGCGTTATCGCGGCTTCTATCCCGAGCAC < 5:70584/135‑1 CGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGGCAGCATGGTGCTGATCAACCCCGACGAACTGCAAACCGGCGCTACGGCCCATGAAGCCGGCTGGCGTTATCGCGGCTTCTATCCCGAGCAC > 6:307798/1‑135 GCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGGCAGCATGGTGCTGATCAACCCCGCCGAACTGCATACCGGCGCTACTGCCCATGAAGCAGGCTGGCGTTATCGAGGCTTCTATCCCGAGCACGc > 5:210175/1‑135 GCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGGCAGCATGGTGCTGATCAACCCCGACGAACTGCATACCGTCGCTACGGCCCATGAAGCCGGCTGGCGTTATCGCGGCTTCTATCCCGAGCAC > 3:271541/1‑134 GCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGGCAGCATGGTGCTGATCAACCCCGACGAACTGCATACCGGCGCTACGGCCCATGAAGCCGGCTGGCGTTATCGCGGCTTCTATCCCGAGCAC > 6:317399/1‑134 GCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGGCAGCATGGTGCTGATCAACCCCGACGAACTGCATACCGGCGCTACGGCCCATGAAGCCGGCTGGCGTTATCGCGGCTTCTATCCCGAGCAC > 7:108807/1‑134 GCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGGCAGCATGGTGCTGATCAACCCCGACGAACTGCATACCGGCGCTACGGCCCATGAAGCCGGCTGGCGTTATCGCGGCTTCTATCCCGAGCAC > 4:181483/1‑134 GCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGGCAGCATGGTGCTGATCAACCCCGACGAACTGCATACCGGCGCTACGGCCCATGAAGCCGGCTGGCGTTATCGCGGCTTCTATCCCGAGCAC > 3:371117/1‑134 AACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGGCAGCATGGTGCTGATCAACCCCGACGAACTGCATACCGGCGCTACGGCCCATGAAGCCGGCTGGCGTTATCGCGGCTTCTATCCCGAGCACGAGCGGGT > 5:110014/1‑135 CGTGTTTTCACACAGCCTGGGTCGGCAGCATGGTGCTGATCAACCCCGACGAACTGCATACCGGCGCTACGGCCCATGAAGCCGGCTGGCGTTATCGCGGCTTCTATCCCGAGCACGAGCGGGTGACCGGTGTGCT < 3:52970/136‑1 CGTGTTTTCACACAGCCTGGGGCGGCAGCATGGTGCTGATCAACCCCGACGAACTGCATACCGGCGCTACGGCCCATGAAGCCGGCTGGCGTTATCGCGGCTTCTATCCCGAGCACGAGCGGGTGACCGGTGTGCT < 8:113670/136‑1 TCACACAGCCTGGGTCGGCAGCATGGTGCTGATCAACCCCGACGAACTGCATACCGGCGCTACGGCCCATGAAGCCGGCTGGCGTTATCGCGGCTTCTATCCCGAGCACGAGCGGGTGACCGGTGTGCTTGACGAA > 1:33920/1‑136 GGGTCGGCAGCATGGTGCTGATCAACCCCGACGAACTGCATACCGGCGCTACGGCCCATGAAGCCGGCTGGCGTTATCGCGGCTTCTATCCCGAGCACGAGCGGGTGACCGGTGTGCTTGACGAACTGGAACTGGG > 1:120704/1‑136 CGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > ACB143/2172306‑2172438‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcgGCAGCATGGTGCTGATCAACCCCGACGAACTGCATACCGGCGCTACGGCCCATGAAGCCGGCTGGCGTTATCGCGGCTTCTATCCCGAGCACGAGCGGGTGACCGGTGTGCTTGACGAACTGGAACTGGG < ACB143/2716441‑2716312 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |