Predicted mutation
evidence seq id position mutation freq annotation gene description
RA KT2440 5,829,038 C→T 9.7% P494L (CCG→CTG)  CJ019_05458 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*KT24405,829,0380CT 9.7% 123.7 / 4.2 41P494L (CCG→CTG) CJ019_05458hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (24/13);  new base T (2/2);  total (26/15)
Fisher's exact test for biased strand distribution p-value = 6.15e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.54e-01

AACAGGTCAAGGCAGCCATGAACAAACACCTGTCAGCCGATAAACTGGTGATCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCAAAGCAAGGGCCAGGGCCACCTGCGCATCATCGCCGGCGAATGGCGCAGCCGCCGCCTGGCGGTGCCGGAAGGCGAAGGCCTGCGG  >  KT2440/5828906‑5829173
                                                                                                                                    |                                                                                                                                       
aaCAGGTCAAGGCAGCCATGAACAAACACCTGTCAGCCGATAAACTGGTGATCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTAcc                                                                                                                                         >  8:149992/1‑133 (MQ=255)
aaCAGGTCAAGGCAGCCATGAACAAACACCTGTCAGCCGATAAACTGGTGATCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCg                                                                                                                                        >  3:1353/1‑134 (MQ=255)
  cAGGTCAAGGCAGCCATGAACAAACACCTGTCAGCCGATAAACTGGTGATCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAg                                                                                                                                     >  8:175560/1‑135 (MQ=255)
  cAGGTCAAGGCAGCCATGAACAAACACCTGTCAGCCGATAAACTGGTGATCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAg                                                                                                                                     >  4:167336/1‑135 (MQ=255)
   aGGTCAAGGCAGCCATGAACAAACACCTGTCAGCCGATAAACTGGTGATCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGc                                                                                                                                    >  5:291037/1‑135 (MQ=255)
        aaGGCAGCCATGAACAAACACCTGTCAGCCGATAAACTGGTGATCGTCACCGTTGGCCCGAAAGTGCCACAAAACCCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAAt                                                                                                                              >  3:35992/1‑136 (MQ=255)
        aaGGCAGCCATGAACAAACACCTGTCAGCCGATAAACTGGTGATCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAAt                                                                                                                              <  4:246027/136‑1 (MQ=255)
         aGGCAGCCATGAACAAACACCTGTCAGCCGATAAACTGGTGATCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAAt                                                                                                                              <  7:175560/135‑1 (MQ=255)
          ggCAGCCATGAACAAACACCTGTCAGCCGATAAACTGGTGATCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATg                                                                                                                             <  8:245183/135‑1 (MQ=255)
                cATTAACAAACACCTGTCAGCCGATAAACTGGTGATCGTCACCGTTGGCCCGAAAGTGCCACAAAACCCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGAt                                                                                                                      <  4:29113/136‑1 (MQ=255)
                  tGAACAAACACCTGTCAGCCGATAAACTGGTGATCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACTGGAGCACTAATGCCAAGAt                                                                                                                      >  6:11775/1‑134 (MQ=255)
                  tGAACAAACACCTGTCAGCCGATAAACTGGTGATCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACTGGAGCACTAATGCCAAGATc                                                                                                                     >  6:6926/1‑135 (MQ=255)
                  tGAACAAACACCTGTCAGCCGATAAACTGGTGATCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATcc                                                                                                                    >  4:60170/1‑136 (MQ=255)
                  tGAACAAACACCTGTCAGCCGATAAACTGGTGATCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATc                                                                                                                     >  8:131693/1‑135 (MQ=255)
                            ccTGTCAGCCGATAAACTGGTGATCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTcccg                                                                                                          >  3:316118/1‑136 (MQ=255)
                            ccTGTCAGCCGATAAACTGGTGATCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTccc                                                                                                           >  5:256545/1‑135 (MQ=255)
                                 cAGCCGATAAACTGGTGATCGTCACCGTTGTCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTcccgcccc                                                                                                      >  7:72084/1‑134 (MQ=255)
                                             tGGTGATCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCggg                                                                                          <  6:163467/135‑1 (MQ=255)
                                                 gATCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGGTCGGGGTACCGGAGCACTATTGCCAAGATCGACCCCTCCCGCCCGCCCGCAAGCGGGCCaa                                                                                      <  5:190410/135‑1 (MQ=255)
                                                  aTCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCaacg                                                                                    >  3:250376/1‑134 (MQ=255)
                                                  aTCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCAAAg                                                                                    >  4:117333/1‑136 (MQ=255)
                                                   tCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCaaa                                                                                     <  8:34655/134‑1 (MQ=255)
                                                   tCGTCACCGTTGGCCCGAAAGTGCCAAAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCaaa                                                                                     <  8:35137/134‑1 (MQ=255)
                                                           gTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACTGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCAAAGCAagggcc                                                                            <  5:6926/135‑1 (MQ=255)
                                                           gTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACTGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCAAAGCAagggcc                                                                            <  5:11775/135‑1 (MQ=255)
                                                                cccGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACACGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCAAAGCAagggccagggc                                                                       <  1:7711/135‑1 (MQ=255)
                                                                 ccGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCAAAGCAAgggccagggcca                                                                     >  4:101328/1‑136 (MQ=255)
                                                                 ccGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGACAAGATCCACCCCACCCGCCCGCCCGCCAGCGGGCCAAAGCAAcggccacggcca                                                                     >  4:65362/1‑136 (MQ=255)
                                                                  cGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCAAAGCAAgggccagggcca                                                                     >  1:114595/1‑135 (MQ=255)
                                                                       gTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCAAAGCAAGGGCCAGGGCCACCTgcg                                                               >  4:177134/1‑136 (MQ=255)
                                                                             caAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCCAGCGGGCCAAAGCAAGGGCCAGGGCCACCTGCGcatca                                                          >  7:204831/1‑135 (MQ=255)
                                                                             caAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCAAAGCAAGGGCCAGGGCCACCTGCGcatca                                                          >  7:282777/1‑135 (MQ=255)
                                                                                                             cTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCAAAGCAAGGGCCAGGGCCCCCTGCGCATCATCGCCGGCGAATGGCGCAGCCGCCGCCTGGCg                          >  2:222181/1‑135 (MQ=255)
                                                                                                                 gAGCAACCGCTCGGGGTACCGGAGCACTAGTGCCAAGATCCACCCCTCCCGCCCGCCCGCCAGCGGGCCAAAGCAAGGGCCAGGGCCACCTGCGCATCATCGCCGGCGAATGGCGCAGCCGCCGCCTGGCGGTGcc                     >  4:64036/1‑136 (MQ=255)
                                                                                                                 gAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCAAAGCAAGGGCCAGGGCCCCCAGCGCATCATCGCCGGCGCATGGCGCCGCCGCCGCCTGGCGGGGc                      >  5:310031/1‑135 (MQ=255)
                                                                                                                  aGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCAAAGCAAGGGCCAGGGCCACCTGCGCATCATCGCCGGCGAATGGCGCAGCCGCCGCCTGGCGGTGcc                     <  1:222181/135‑1 (MQ=255)
                                                                                                                   gCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCAAAGCAAGGGCCAGGGCCACCTGCGCATCATCGCCGGCGAATGGCGCAGCCGCCGCCTGGCGGTGcc                     >  5:187269/1‑134 (MQ=255)
                                                                                                                     aaCCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCAAAGCAAGGGCCAGGGCCACCTGCGCATCATCGCCGGCGAATGGCGCAGCCGCCGCCTGGCGGTGCCg                    >  5:351354/1‑133 (MQ=255)
                                                                                                                       ccGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTCCCCCCCGCCCGCAAGCGGGCCAAAGCAAGGGCCAGGGCCACCTGCGCATCATCGCCGGCGAATGGCGCAGCCGCCGCCTGGCGGTGCCGgaag                <  6:165894/135‑1 (MQ=255)
                                                                                                                             ggggTACCGGAGCACTAATGCCAAGATCCACCCCTCccgcccgcccgc                                                                                                 <  4:205044/48‑1 (MQ=255)
                                                                                                                             ggggTACCGGAGCACTAATGCCAAGATCCACCCCTCccgcccgcccgc                                                                                                 >  3:205044/1‑48 (MQ=255)
                                                                                                                              gggTACCGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCAAAGCAAGGGCCAGGGCCACCTGCGCATCATCGCCGGCGAATGGCGCAGCCGCCGCCTGGCGGTGCCGgaaggcgaaggc        <  3:60170/136‑1 (MQ=255)
                                                                                                                                    cGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCACGCGGGCCAAAGCAAGGGCCAGGGCCACCTGCGCATCATCGCCGGCGAATGGCGCAGCCGCCGCCTGGCGGTGCCGGAAGGCGAAGGCCTGc    <  6:303388/134‑1 (MQ=255)
                                                                                                                                    cGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCAAAGCAAGGGCCAGGGCCACCTGCGCATCATCGCCGGCGAATGGCGCAGCCGCCGCCTGGCGGTGCCGGAAGGCGAAGGCCTGCgg  <  4:193036/136‑1 (MQ=255)
                                                                                                                                    |                                                                                                                                       
AACAGGTCAAGGCAGCCATGAACAAACACCTGTCAGCCGATAAACTGGTGATCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCAAAGCAAGGGCCAGGGCCACCTGCGCATCATCGCCGGCGAATGGCGCAGCCGCCGCCTGGCGGTGCCGGAAGGCGAAGGCCTGCGG  >  KT2440/5828906‑5829173

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: