Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | KT2440 | 5,829,038 | C→T | 9.7% | P494L (CCG→CTG) | CJ019_05458 → | hypothetical protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | KT2440 | 5,829,038 | 0 | C | T | 9.7% | 123.7 / 4.2 | 41 | P494L (CCG→CTG) | CJ019_05458 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base C (24/13); new base T (2/2); total (26/15) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.15e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.54e-01 |
AACAGGTCAAGGCAGCCATGAACAAACACCTGTCAGCCGATAAACTGGTGATCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCAAAGCAAGGGCCAGGGCCACCTGCGCATCATCGCCGGCGAATGGCGCAGCCGCCGCCTGGCGGTGCCGGAAGGCGAAGGCCTGCGG > KT2440/5828906‑5829173 | aaCAGGTCAAGGCAGCCATGAACAAACACCTGTCAGCCGATAAACTGGTGATCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTAcc > 8:149992/1‑133 (MQ=255) aaCAGGTCAAGGCAGCCATGAACAAACACCTGTCAGCCGATAAACTGGTGATCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCg > 3:1353/1‑134 (MQ=255) cAGGTCAAGGCAGCCATGAACAAACACCTGTCAGCCGATAAACTGGTGATCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAg > 8:175560/1‑135 (MQ=255) cAGGTCAAGGCAGCCATGAACAAACACCTGTCAGCCGATAAACTGGTGATCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAg > 4:167336/1‑135 (MQ=255) aGGTCAAGGCAGCCATGAACAAACACCTGTCAGCCGATAAACTGGTGATCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGc > 5:291037/1‑135 (MQ=255) aaGGCAGCCATGAACAAACACCTGTCAGCCGATAAACTGGTGATCGTCACCGTTGGCCCGAAAGTGCCACAAAACCCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAAt > 3:35992/1‑136 (MQ=255) aaGGCAGCCATGAACAAACACCTGTCAGCCGATAAACTGGTGATCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAAt < 4:246027/136‑1 (MQ=255) aGGCAGCCATGAACAAACACCTGTCAGCCGATAAACTGGTGATCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAAt < 7:175560/135‑1 (MQ=255) ggCAGCCATGAACAAACACCTGTCAGCCGATAAACTGGTGATCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATg < 8:245183/135‑1 (MQ=255) cATTAACAAACACCTGTCAGCCGATAAACTGGTGATCGTCACCGTTGGCCCGAAAGTGCCACAAAACCCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGAt < 4:29113/136‑1 (MQ=255) tGAACAAACACCTGTCAGCCGATAAACTGGTGATCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACTGGAGCACTAATGCCAAGAt > 6:11775/1‑134 (MQ=255) tGAACAAACACCTGTCAGCCGATAAACTGGTGATCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACTGGAGCACTAATGCCAAGATc > 6:6926/1‑135 (MQ=255) tGAACAAACACCTGTCAGCCGATAAACTGGTGATCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATcc > 4:60170/1‑136 (MQ=255) tGAACAAACACCTGTCAGCCGATAAACTGGTGATCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATc > 8:131693/1‑135 (MQ=255) ccTGTCAGCCGATAAACTGGTGATCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTcccg > 3:316118/1‑136 (MQ=255) ccTGTCAGCCGATAAACTGGTGATCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTccc > 5:256545/1‑135 (MQ=255) cAGCCGATAAACTGGTGATCGTCACCGTTGTCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTcccgcccc > 7:72084/1‑134 (MQ=255) tGGTGATCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCggg < 6:163467/135‑1 (MQ=255) gATCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGGTCGGGGTACCGGAGCACTATTGCCAAGATCGACCCCTCCCGCCCGCCCGCAAGCGGGCCaa < 5:190410/135‑1 (MQ=255) aTCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCaacg > 3:250376/1‑134 (MQ=255) aTCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCAAAg > 4:117333/1‑136 (MQ=255) tCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCaaa < 8:34655/134‑1 (MQ=255) tCGTCACCGTTGGCCCGAAAGTGCCAAAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCaaa < 8:35137/134‑1 (MQ=255) gTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACTGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCAAAGCAagggcc < 5:6926/135‑1 (MQ=255) gTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACTGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCAAAGCAagggcc < 5:11775/135‑1 (MQ=255) cccGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACACGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCAAAGCAagggccagggc < 1:7711/135‑1 (MQ=255) ccGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCAAAGCAAgggccagggcca > 4:101328/1‑136 (MQ=255) ccGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGACAAGATCCACCCCACCCGCCCGCCCGCCAGCGGGCCAAAGCAAcggccacggcca > 4:65362/1‑136 (MQ=255) cGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCAAAGCAAgggccagggcca > 1:114595/1‑135 (MQ=255) gTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCAAAGCAAGGGCCAGGGCCACCTgcg > 4:177134/1‑136 (MQ=255) caAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCCAGCGGGCCAAAGCAAGGGCCAGGGCCACCTGCGcatca > 7:204831/1‑135 (MQ=255) caAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCAAAGCAAGGGCCAGGGCCACCTGCGcatca > 7:282777/1‑135 (MQ=255) cTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCAAAGCAAGGGCCAGGGCCCCCTGCGCATCATCGCCGGCGAATGGCGCAGCCGCCGCCTGGCg > 2:222181/1‑135 (MQ=255) gAGCAACCGCTCGGGGTACCGGAGCACTAGTGCCAAGATCCACCCCTCCCGCCCGCCCGCCAGCGGGCCAAAGCAAGGGCCAGGGCCACCTGCGCATCATCGCCGGCGAATGGCGCAGCCGCCGCCTGGCGGTGcc > 4:64036/1‑136 (MQ=255) gAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCAAAGCAAGGGCCAGGGCCCCCAGCGCATCATCGCCGGCGCATGGCGCCGCCGCCGCCTGGCGGGGc > 5:310031/1‑135 (MQ=255) aGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCAAAGCAAGGGCCAGGGCCACCTGCGCATCATCGCCGGCGAATGGCGCAGCCGCCGCCTGGCGGTGcc < 1:222181/135‑1 (MQ=255) gCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCAAAGCAAGGGCCAGGGCCACCTGCGCATCATCGCCGGCGAATGGCGCAGCCGCCGCCTGGCGGTGcc > 5:187269/1‑134 (MQ=255) aaCCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCAAAGCAAGGGCCAGGGCCACCTGCGCATCATCGCCGGCGAATGGCGCAGCCGCCGCCTGGCGGTGCCg > 5:351354/1‑133 (MQ=255) ccGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTCCCCCCCGCCCGCAAGCGGGCCAAAGCAAGGGCCAGGGCCACCTGCGCATCATCGCCGGCGAATGGCGCAGCCGCCGCCTGGCGGTGCCGgaag < 6:165894/135‑1 (MQ=255) ggggTACCGGAGCACTAATGCCAAGATCCACCCCTCccgcccgcccgc < 4:205044/48‑1 (MQ=255) ggggTACCGGAGCACTAATGCCAAGATCCACCCCTCccgcccgcccgc > 3:205044/1‑48 (MQ=255) gggTACCGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCAAAGCAAGGGCCAGGGCCACCTGCGCATCATCGCCGGCGAATGGCGCAGCCGCCGCCTGGCGGTGCCGgaaggcgaaggc < 3:60170/136‑1 (MQ=255) cGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCACGCGGGCCAAAGCAAGGGCCAGGGCCACCTGCGCATCATCGCCGGCGAATGGCGCAGCCGCCGCCTGGCGGTGCCGGAAGGCGAAGGCCTGc < 6:303388/134‑1 (MQ=255) cGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCAAAGCAAGGGCCAGGGCCACCTGCGCATCATCGCCGGCGAATGGCGCAGCCGCCGCCTGGCGGTGCCGGAAGGCGAAGGCCTGCgg < 4:193036/136‑1 (MQ=255) | AACAGGTCAAGGCAGCCATGAACAAACACCTGTCAGCCGATAAACTGGTGATCGTCACCGTTGGCCCGAAAGTGCCACAAAAACCGCTGCCAGCACCCACTGACAAGCCCTCCGAGCAACCGCTCGGGGTACCGGAGCACTAATGCCAAGATCCACCCCTCCCGCCCGCCCGCAAGCGGGCCAAAGCAAGGGCCAGGGCCACCTGCGCATCATCGCCGGCGAATGGCGCAGCCGCCGCCTGGCGGTGCCGGAAGGCGAAGGCCTGCGG > KT2440/5828906‑5829173 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |