Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | KT2440 | 1,525,921 | C→T | 6.1% | T292T (ACC→ACT) | secA → | Protein translocase subunit SecA |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | KT2440 | 1,525,921 | 0 | C | T | 6.1% | 201.1 / 3.2 | 65 | T292T (ACC→ACT) | secA | Protein translocase subunit SecA |
Reads supporting (aligned to +/- strand): ref base C (33/28); new base T (2/2); total (35/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.49e-01 |
GATCATTTCCGGTCAGGCCGAGGACAGCTCCAAGCTGTACATCGAGATCAACCGCCTGATCCCGCGCCTCACCCAGCACATCGAAGAGGTCGAAGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATGCTGGCCCAGGCGGGCCTGCTGGCTGAAGGCGAGAGCCTGTACTCCGCGCACAACCTGGGCTTGCTGA > KT2440/1525798‑1526051 | gATCATTTCCGGTCAGGCCGAGGACAGCTCCAAGCTGTACATCGAGATCAACCGCCTGATCCCGCGCCTCACCCAGCACATCGAAGAGGTCGAAGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGagaa > 7:243305/1‑135 (MQ=255) tCATTTCCGGTCAGGCCGAGGACAGCTCCAAGCTGTACATCGAGATCAACCGCCTGATCCCGCGCCTCACCCAGCACATCGAAGAGGTCGAAGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGagaaga > 6:134484/1‑135 (MQ=255) ggTCAGGCCGAGGACAGCTCCAAGCTGTACATCGAGATCAACCGCCTGATCCCGCGCCTCACCCAGCACATCGAAGAGGTCGAAGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAg < 5:158248/135‑1 (MQ=255) tCAGGCCGAGGACAGCTCCAAGCTGTACATCGAGATCAACCGCCTGATCCCGCGCCTCACCCAGCACATCGAAGAGGTCGAAGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGTg < 4:116583/136‑1 (MQ=255) aGGCCGAGGACAGCTCCAAGCTGTACCTCGAGATCAACCGCCTGATCTCGCGCCTCACCCAGCACATCGAAGAGGTCGAAGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGt > 5:257061/1‑133 (MQ=255) aGGCCGAGGACAGCTCCAAGCTGTACATCGAGATCAACCGCCTGATCCCGCGCCTCACCCAGCACATCGAAGAGGTCGAAGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGt > 1:233887/1‑133 (MQ=255) gAGGACAGCTCCAAGCTGTACATCGAGATCAACCGCCTGATCCCGCGCCTCACCCAGCACATCGAAGAGGTCGAAGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGTGGAGCt > 6:193450/1‑134 (MQ=255) gcaattcTGTAATTCTAGAACAACCGCTGGAGCCCGCGCCGCACCCCGCACAGCAAAGGGGGCGATGGCCTGGTCACCCAGTAAGGCCACTTCACCATGGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAg < 2:364497/127‑1 (MQ=255) ccAAGCTGTACATCGAGATCAACCGCCTGATCCCGCGCCTCACCCAGCACATCGAAGAGGTCGAAGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAg > 4:154424/1‑132 (MQ=255) ccAAGCTGTACATCGAGATCAACCGCCTGATCCCGCGCCTCACCCAGCACATCGAAGAGGTCGAAGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAg < 3:154424/132‑1 (MQ=255) cAAGCTGTACATCGAGATCAACCGCCTGATCCCGCGCCTCACCCAGCACATCGAAGAGGTCGAAGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCgg > 1:229266/1‑135 (MQ=255) cAAGCTGTACATCGAGATCAACCGCCTGATCCCGCGCCTCACCCAGCACATCGAAGAGGTCGAAGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGt > 3:338074/1‑136 (MQ=255) agaTCGATGTCAACCGCCTGATCCCGGGCCTCACCCAGCACTTCGAAGAGGTCGAAGGACAGGTCACCCATGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGt < 3:38830/133‑1 (MQ=255) cagctagaTCACCCGCCTGATCCCGCGCCTCACCCAGCACATCTAAGCGGTCGAAGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGtt < 7:358947/130‑1 (MQ=255) aTCGAGATCAACCGCCTGATCCCGCGCCTCACCCAGCACATCGAAGAGGTCGAAGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTc > 8:36047/1‑135 (MQ=255) aTCGAGATCAACCGCCTGATCCCGCGCCTCACCCAGCACATCGAAGAGGTCGAAGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTc > 1:13433/1‑135 (MQ=255) tCGAGATCAACCGCCTGATCCCGCGCCTCACCCCGCACATCGAAGAGGTCGCAGGCCAGGTCACCCAGGAAGGCCCCTTCACCATCGACGAGAAGAGTCGCCAGGGGGAGCTGACCGAAGCCGCTCACCAGttac > 7:325242/1‑133 (MQ=255) agaTCAACCGCCTGATCCCGCGCCTCACCCAGCACATCGAAGAGGTCGAAGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGACGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCg < 2:329984/135‑1 (MQ=255) gaTCAACCGCCTGATCCCGCGCCTCACCCAGCACATCGAAGAGGTCGAAGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCg > 3:365689/1‑134 (MQ=255) tCAACCGCCTGATCCCGCGCCTCACCCAGCACATCGAAGAGGTCGAAGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGa > 6:339785/1‑133 (MQ=255) acccGCCTGAGCCCGCGCCTCCCCCAGCACAGCGAAGAGGTCGAAGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAagag < 8:257373/133‑1 (MQ=255) aCCGCGTCATCTCGCGCCTCACCCAGCACATCGACGAGGTCGAAGGCCAGGTCACCCAGGAAGGCAACTTCACCATCGACTAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAagag < 6:257061/134‑1 (MQ=255) gCCTGATCCCGCGCCTCACCCAGCACATCGAAGAGGTCGAAGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATGc > 5:81289/1‑135 (MQ=255) gATCCCGCGCCTCACCCAGCACATCGAAGAGGTCGAAGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATGCTGGcc > 3:16791/1‑136 (MQ=255) gATCCCGCGCCTCACCCAGCACATCGAAGAGGTCGAAGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATGCTGGc > 6:19363/1‑135 (MQ=255) gcCTCACCCAGCACATCGAAGAGGTCGAAGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAagag < 6:136896/73‑1 (MQ=255) gcCTCACCCAGCACATCGAAGAGGTCGAAGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAagag > 5:136896/1‑73 (MQ=255) cTCACCCAGCACATCGAAGAGGTCGAAGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATGCTGGCCCAGGCGGGc > 1:229620/1‑135 (MQ=255) aTCGAAGAGGTCGACGGCCAGGGCACCCAGGAAGCCCACTTCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATGCTGGCCCAGGCGGGCCTGCTGGCTGAAg < 4:16791/136‑1 (MQ=255) aTCGAAGAGGTCGAAGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATTCTGGCCCAGGCGGGCCTGCTGGCTGaa > 6:257400/1‑135 (MQ=255) aTCGAAGAGGTCGAAGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATGCTGGCCCAGGCGGGCCTGCTGGCTGaa > 2:89745/1‑135 (MQ=255) aTCGAAGAGGTCGAAGGCCAGGGCCCCCAGGAAGGCCACTTCACCATCGACGAGAAGAGGCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATGCTGGCCCAGGCGGGCCTGCTGGCTGAAg < 4:26990/136‑1 (MQ=255) tCGAAGAGGTCGAAGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATGCTGGCCCAGGCGGGCCTGCTGGCTGAAg < 8:201206/135‑1 (MQ=255) tCGAAGAGGTCGAAGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATGCTGGCCCAGGCGGGCCTGCTGGCTGAAg < 5:339785/135‑1 (MQ=255) tCGAAGAGGGCGAAGGCCAGGTCACCCAGGAAGTCCACTTCACCATCGACGAGAAGAGTCGCCAGGCGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATGCTGGCCCAGGCGGGCCTGCTGGCTGAAg < 8:18108/135‑1 (MQ=255) tCGAAGAGCTCGACGGCCAGGTCACCCCGGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATGCTGGCCCAGGCGGGCCTGCTGGCTGAAg < 6:115920/135‑1 (MQ=255) cgacgaGGGCGAACGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAAGAGGCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATGCTGGCCCAGGCGGGCCTGCTGGCTGAAGGc < 3:285840/136‑1 (MQ=255) cGAAGAGGTCGAAGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGGGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATGCTGGCCCAGGCGGGCCTGCTGGCTGAAGGc < 3:353946/136‑1 (MQ=255) taatagGTCGAAGGCCAGGTCACCCAGGACGGCCACTTCACCATCGACGATAAGAGTCGCGAGGGGGAGCTGAACGAAGCCTGTCACCAGTTCATCGAAGAGATGCTGGCCCAGGCGGGCCTGCTGGCTTAAGGc < 2:69606/131‑1 (MQ=255) gacgagGGCGAAGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATGCTGGCCCAGGCGGGCCTGCTGGCTGAAGGc < 1:87670/132‑1 (MQ=255) gAAGAGGTCGAAGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATGCTGGCCCAGGCGGGCCTGCTGGCTGAAGGc > 6:181661/1‑135 (MQ=255) aaGAGGTCGAAGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATGCTGGCCCAGGCGGGCCTGCTGGCTGAAgg > 8:281768/1‑133 (MQ=255) aaGAGGTCGAAGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATGCTGGCCCAGGCGGGCCTGCTGGCTGAAGGc < 2:233887/134‑1 (MQ=255) agagGTCGAAGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATGCTGGCCCAGGCGGGCCTGCTGGCTGAAgg > 8:10340/1‑132 (MQ=255) agagGTCGAAGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATGCTGGCCCAGGCGGGCCTGCTGGCTGAAGGc > 3:170002/1‑133 (MQ=255) gAAGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATGCTGGCCCAGGCGGGCCTGCTGGCTGAAGGCGAGAGCCt > 8:318344/1‑134 (MQ=255) aaGGCCAGGTCACCCAGGCAGGCCACTTCACCATCGACGAGACCAGTCGCCAGGAGGAGCTGACCGAAGCCGGTCACCAGTTCATCGAAGAGATGCTGGCCCAGGCGGGCCTGCTGGCTGAAGGCGAGAGCCTGt < 6:81289/135‑1 (MQ=255) aaGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATGCTGGCCCAGGCGGGCCTGCTGGCTGAAGGCGAGAGCCTGt > 2:96252/1‑135 (MQ=255) aaGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATGCTGGCCCAGGCGGGCCTGCTGGCTGAAGGCGAGAGCCTGt > 5:339038/1‑135 (MQ=255) aaGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATGCTGGCCCAGGCGGGCCTGCTGGCTGAAGGCGAGAGCCTGTa > 4:319032/1‑136 (MQ=255) gTCACCCAGGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATGCTGGCCCAGGCGGGCCTGCTGGCTGAAGGCGAGAGCCTGTACTCcgcg > 2:85395/1‑135 (MQ=255) ggAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATGCTGGCCCAGGCGGGCCTGCTGGCTGAAGGCGAGAGCCTGTACTCCGCGCACAACCTg > 4:361034/1‑136 (MQ=255) gCCACTTCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATGCTGGCCCAGGCGGGCCTGCTGGCTGAAGGCGAGAGCCTGTACTCCGCGCACAACCTGGGCt < 7:10340/135‑1 (MQ=255) cTTCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATGCTGGCCCAGGCGGGCCTGCTGGCTGAAGGCGAGAGCCTGTACTCCGCGCACAACCTGGGCTTGCTg < 4:170002/136‑1 (MQ=255) ttCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATGCTGGCCCAGGCGGGCCTGCTGGCTGAAGGCGAGAGCCTGTACTCCGCGCACCACCTGCGCTTGCTGa > 3:207426/1‑136 (MQ=255) ttCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATGCTGGCCCAGGCGGGCCTGCTGGCTGAAGGCGAGAGCCTGTACTCCGCGCACAACCTGGGCTTGCTg < 1:85395/135‑1 (MQ=255) ttCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATGCTGGCCCAGGCGGGCCTGCTGGCTGAAGGCGAGAGCCTGTACTCCGCGCACAACCTGGGCTTGCTg < 7:281768/135‑1 (MQ=255) ttCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATGCTGGCCCAGGCGGGCCTGCTGGCTGAAGGCGAGAGCCTGTACTCCGCGCACAACCTGGGCTTGCTg < 5:193450/135‑1 (MQ=255) ttCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATGCTGGCCCAGGCGGGCCTGCTGGCTGAAGGCGAGAGCCTGTACTCCGCGCACAACCAGGGCTTGCTGa > 3:280271/1‑136 (MQ=255) cACTATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCCTCGAAGAGATGCTGGCCCAGGCGGGCCTGCTGGCTGAAGGCGAGAGCCTGTACTCCGCGCACAACCTGGGCTTGc < 8:352547/131‑1 (MQ=255) cACTATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATGCTGGCCCAGGCGGGCCTGCTGGCTGAAGGCGAGAGCCTGTACTCCGCGCACAACCTGGGCTTGc > 7:352547/1‑131 (MQ=255) cACTATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATGCTGGCCCAGGCGGGCCTGCTGGCTGAAGGCGAGAGCCTGTACTCCGCGCACAACCTGGGCTTGc < 8:352550/131‑1 (MQ=255) cACTATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATGCTCGCCCAGGCGGGCCTGCTGGCTGAAGGCGAGAGCCTGTACTCAGCGCACAACCTGGGCTTGc > 7:352550/1‑131 (MQ=255) cACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGCAGCCGGTCACCAGTTCATCGAAGAGATGCTGGCCCAGGCGGGCCTGCTGGCTGAAGGc > 5:323784/1‑97 (MQ=255) cACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATGCTGGCCCAGGCGGGCCTGCTGGCTGAAGGc < 6:323784/97‑1 (MQ=255) | GATCATTTCCGGTCAGGCCGAGGACAGCTCCAAGCTGTACATCGAGATCAACCGCCTGATCCCGCGCCTCACCCAGCACATCGAAGAGGTCGAAGGCCAGGTCACCCAGGAAGGCCACTTCACCATCGACGAGAAGAGTCGCCAGGTGGAGCTGAACGAAGCCGGTCACCAGTTCATCGAAGAGATGCTGGCCCAGGCGGGCCTGCTGGCTGAAGGCGAGAGCCTGTACTCCGCGCACAACCTGGGCTTGCTGA > KT2440/1525798‑1526051 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |