Predicted mutation
evidence seq id position mutation freq annotation gene description
RA KT2440 3,712,756 T→C 100% intergenic (‑299/‑48) paaF_1 ← / → yrdA_3 2,3‑dehydroadipyl‑CoA hydratase/Protein YrdA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*KT24403,712,7560TC100.0% 247.6 / ‑6.8 73intergenic (‑299/‑48)paaF_1/yrdA_32,3‑dehydroadipyl‑CoA hydratase/Protein YrdA
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base C (34/38);  minor base A (1/0);  total (35/38)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

TATGATCACAGCTCCAGTGCAATGCTTGCTGAAGAATCGTTTAACCTTTGCATTTTCTAGTACTTACAGCGGGTTTTTGCCTTGCAGCATTAATTCAACACAAGTGATACACGATTGACGACCAAACAGCATCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGCCTGACGCCTGTGGTTCACCCGACAGCCTACGTGCACCCCAGCGCAGTCCTGATC  >  KT2440/3712625‑3712881
                                                                                                                                   |                                                                                                                             
tATGATCACAGCTCCAGTGCAATGCTTGCTGAAGAATCGTTTAACCTTTGCATTTTCTAGTACTTACAGCGGGTTTTTGCCTTGCAGCATTAATTCAACACAAGTGATACACGATTGACGACCAAACAGCACCTg                                                                                                                            >  5:211650/1‑135 (MQ=255)
tATGATCACAGCTCCAGTGCAATGCTTGCTGAAGAATCGTTTAACCTTTGCATTTTCTAGTACTTACAGCGGGTTTTTGCCTTGCAGCATTAATTCAACACAAGTGATACACGATTGACGACCAAACAGCACCTGa                                                                                                                           >  3:235139/1‑136 (MQ=255)
     tCACAGCTCCAGTGCAATGCTTGCTGAAGAATCGTTTAACCTTTTCATTTTCTAGTACTTACAGCGGGTTTTTGCCTTGCAGCATTTATTCATCACTAGTGATACACGATTGACGACCAAACAGCACCTGATACa                                                                                                                       <  6:366904/135‑1 (MQ=255)
              cAGTGCAATGCTTGCTGAAGAATCGTTTAACCTTTGCATTTTCTAGTACTTACAGCGGGTTTTTGCCTTGCAGCATTAATTCAACACAAGTGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGAc                                                                                                               <  4:235191/134‑1 (MQ=255)
                  gCAATGCTTGCTGAAGAATCGTGTAACCTTTGCATTTTATAGTACTTACAGCCGGTTTTTTGCTTGCAGCATTAATTCAACACAAGTGATACACGAATTACGACCAAAAAGCACCTGATACAAGATCCACTGACa                                                                                                          >  6:299612/1‑135 (MQ=255)
                   cAATGCTTTCTGAAGAATCGTTTAACCTTTGCATATTCTAGTACTTACAGCGTGTTTTTTCCTTGCAGCAGTAATTCAACACAAGTGAGACACGATTGACGACCAACCAGCAACTGATACAATATCGACTGACag                                                                                                         >  8:320513/1‑134 (MQ=255)
                        cttgctGAAGAATCGTTTAACCTTTGCATTTTCTAGTACTTACAGCGGGTTTTTGCCTTGCAGCATTAATTCAACACAAGTGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCaa                                                                                                    >  2:46098/1‑135 (MQ=255)
                        cttgctGAAGAATCGTTTAACCTTTGCATTTTCTAGTACTTACAGCGGGTTTTTGCCTTGCAGCATTAATTCAACACAAGTGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCaa                                                                                                    >  6:61841/1‑135 (MQ=255)
                         ttgctGAAGAATCGTTTAACCTTTGCATTTTCTAGTACTTACAGCGGGTTTTTGCCTTGCAGCATTAATTCAACACAAGTGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCaaa                                                                                                   >  8:76867/1‑135 (MQ=255)
                             tGAAGAATCGTTTAACCTTTGCATTTTCTAGTACTTACAGCGGGTTTTTGCCTTGCAGCATTAATTCAACACAAGTGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCAt                                                                                               <  1:46098/135‑1 (MQ=255)
                              gaagaaTCGTTTAACCTTTGCATTTTCTAGTACTTACAGCGGGTTTTTGCCTTGCAGCATTAATTCAACACAAGTGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCAtt                                                                                              >  1:349000/1‑135 (MQ=255)
                              gaagaaTCGTTTAACCTATGCAATTAATAGTACTTACAGCGGGATTTTGCCTTGCAGCATTAATACAACAAAAGTGATACACTAATGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAaataata                                                                                              >  7:362641/1‑134 (MQ=255)
                                agaaTCGTTTAACCTTTGCATTTTCTAGTACTTACAGCGGGTTTTTGCCTTGCAGCATTAATTCAACACAAGTGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCAttt                                                                                             <  1:208293/134‑1 (MQ=255)
                                   aTCGTTTAACCTTTGCATTTTCTAGTACTTACAGCGGGTTTTTGCCTTGCAGCATTAATTCAACACAAGTGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCgaga                                                                                        <  4:97275/136‑1 (MQ=255)
                                   aTCGTTTAACCTTTGCATTTTCTAGTACTTACAGCGGGTTTTTGCCTTGCAGCATTAATTCAACACAAGTGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCg                                                                                           >  8:370407/1‑133 (MQ=255)
                                     cGTTTAACCTTTGCATTTTCTAGTACTTACAGCGGGTTTTTGCCTTGCAGCATTAATTCAACACAAGTGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCAttt                                                                                             <  7:156361/129‑1 (MQ=255)
                                     cGTTTAACCTTTGCATTTTCTAGTACTTACAGCGGGTTTTTGCCTTGCAGCATTAATTCAACACAAGTGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCAttt                                                                                             >  8:156361/1‑129 (MQ=255)
                                          aaCCTTTGCATTTTCTAGTACTTACAGCGGGTTTTTGCCTTGCAGCATTAATTCAACACAAGTGATACACGATTGCCGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGtt                                                                                   <  8:99515/134‑1 (MQ=255)
                                             cTTTGCATTTTCTAGTACTTACAGCGGGTTTTTGCCTTGCAGCATTAATTCAACACAAGTGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCAt                                                                              <  3:345217/136‑1 (MQ=255)
                                              tttGCATTTTCTAGTACTTACAGCGGGTTTTTGCCTTGCAGCATTAATTCAACACAAGTGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCAt                                                                              <  7:111395/135‑1 (MQ=255)
                                              tttGCATTTTCTAGTACTTACAGCGGGTTTTTGCCTTGAATCTTTATTTCAACTCTTGTGATACACGATTGACGACCAAACAGGACGTGATACATGATCGACTGACATTCCTTATCATTTCGAGAGTGTTGGCAt                                                                              <  5:373412/135‑1 (MQ=255)
                                                   aTTTTCTAGTACTTACAGCGGGTTTTTGCCTTGCAGCATTAATTCAACACAAGTGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCtt                                                                         >  6:22107/1‑135 (MQ=255)
                                                   aTTTTCTAGTACTTACAGCGGGTTTTTGCCTTGCAGCATTAATTCAACACAAGTGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTg                                                                        >  4:128958/1‑136 (MQ=255)
                                                   aTTTTCAAGTACTTACAGCGGGTTTTTGCCTTGCAGCATTAATTCAACACAAGTGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCtt                                                                         <  5:41791/135‑1 (MQ=255)
                                                     tttCTAGTACTTACAGCGGGTTTTTGCCTTGCAGCATTAATTCAACACAAGTGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCtt                                                                         >  8:178668/1‑133 (MQ=255)
                                                     tttCTAGTACTTACAGCGGGTTTTTGCCTTGCAGCATTAATTCAACACAAGTGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCtt                                                                         <  7:178668/133‑1 (MQ=255)
                                                        cTAGTACTTACAGCGGGTTTTTGCCTTGCAGCATTAATTCAACACAAGTGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTAt                                                                    <  4:53751/135‑1 (MQ=255)
                                                          aGTACTTACAGCGGGTTTTTGCATTGAAGCATTAATTAAACACAAGTTATACACTATTGACGACAAAACAGCACCTGATACAAGATCGACTGACATACCAAATCATTTAGATAGTGTTGCCATGCCTTGATATc                                                                   >  1:261437/1‑134 (MQ=255)
                                                             aCTTAGAGCGGGTTTTTGCCTTGCAGCATTAATTGAACACAAGTGATAGACGATTGTCGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACt                                                               <  1:2358/135‑1 (MQ=255)
                                                                   aGCGGGTTTTTGCCTTGCAGCATTAATTCAACACAAGTGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACgg                                                         <  5:61841/135‑1 (MQ=255)
                                                                    gCGGGTTTTTGCCTTGCAGCATTAATTCAACACAAGTGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGc                                                        >  7:198397/1‑135 (MQ=255)
                                                                    gCGGGTTTTTGCCTTGCAGCATTAATTCAACACAAGTGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGc                                                        >  5:296182/1‑135 (MQ=255)
                                                                    gCGGGTTTTTGCCTTGCAGCATTAATTCAACACAAGTGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGc                                                        >  5:310993/1‑135 (MQ=255)
                                                                    gCGGGTTTTTGCCTTGCAGCATTAATTAAACACAAGTGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGc                                                        >  1:13973/1‑135 (MQ=255)
                                                                           tttGCCTTGCAGCATTAATTCAACACAAGTGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGCCTGACg                                                  >  1:77975/1‑134 (MQ=255)
                                                                           tttGCCTTGCAGCATTAATTCAACACAAGTGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGCCTGACGc                                                 >  1:83281/1‑135 (MQ=255)
                                                                           tttGCCTTGCAGCATTAATTCAACACAAGTGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGCCTGACGc                                                 >  7:14071/1‑135 (MQ=255)
                                                                                    cagcaTTAATTCAACACAAGTGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGCCTGACGCCTGTGGTTc                                        >  1:221307/1‑135 (MQ=255)
                                                                                      gcaTTAATTCAACACAAGTGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGCCTGACGCCTGTGGTTCAc                                      >  6:343166/1‑135 (MQ=255)
                                                                                       caTTAATTCAACACAATTGATACACGATTGCCGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGCCTGACGCCTGTGGTTCAcc                                     <  8:4998/135‑1 (MQ=255)
                                                                                       caTTAATTCAACACAAGTGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGCCTGACGCCTGTGGTTCAcc                                     <  7:370407/135‑1 (MQ=255)
                                                                                       caTTAATTCAACACAAGTGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGCCTGACGCCTGTGGTTCAcc                                     <  5:194199/135‑1 (MQ=255)
                                                                                       caTTAATTCAACACAAGTGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGCCTGACGCCTGTGGTTCAcc                                     <  6:99177/135‑1 (MQ=255)
                                                                                        aTTAATTCAACACAAGTCAAACACGTTTGACGACCAAACAGAACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGCCTGACGCCTGTGGTTCAccc                                    <  1:167427/135‑1 (MQ=255)
                                                                                            aTTCAACACAAGTGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGCCTGACGCCTGTGGTTCACCCGAc                                 <  2:139818/134‑1 (MQ=255)
                                                                                             ttCAACACAAGTGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGCCTGACGCCTGTGGTTCACCCGACAg                               <  2:213197/135‑1 (MQ=255)
                                                                                                  cacaCGTGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGCCTGACGCCTGTGGTTCACCCGACAGCCTAc                          <  8:301310/135‑1 (MQ=255)
                                                                                                    caAGTGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGCCTGACGCCTGTGGTTCACCCGACAGCCTACGt                        >  7:140954/1‑135 (MQ=255)
                                                                                                    caAGTGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGCCTGACGCCTGTGGTTCACCCGACAGCCTACGt                        >  7:241385/1‑135 (MQ=255)
                                                                                                       gggATACACGATTGACGACCAACCAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGCCTGACGCCTGTGGTTCACCCGACAGCCTACGTGCa                     <  2:192733/133‑1 (MQ=255)
                                                                                                       gggATACACGATCGACGACCAACCAGCACCTGATACAAGAGCGACTGACATTCCAAATCATTTCGAGAGGGTTGCCATGACTTGCTATCGACTGGACGGCCTGACGCCTGTGGTTCACCCGACAGCCTACGTGCa                     <  6:57736/133‑1 (MQ=255)
                                                                                                       gTGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGCCTGACGCCTGTGGTTCACCCGACAGCCTACGTGCa                     <  6:264757/135‑1 (MQ=255)
                                                                                                        tGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGCCTGACGCCTGTGGTTCACCCGACAGCCTACGt                        <  7:26012/131‑1 (MQ=255)
                                                                                                        tGATACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGCCTGACGCCTGTGGTTCACCCGACAGCCTACGt                        >  8:26012/1‑131 (MQ=255)
                                                                                                           tACACGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGCCTGACGCCTGTGGTTCACCCGACAGCCTACGTGCACCCCa                <  4:235139/136‑1 (MQ=255)
                                                                                                            acacGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGCCTGACGCCTGTGGTTCACCCGACAGCCTACGTGCACCCCa                <  1:264583/135‑1 (MQ=255)
                                                                                                            acacGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGCCTGACGCCTGTGGTTCACCCGACAGCCTACGTGCACCCCa                <  8:14071/135‑1 (MQ=255)
                                                                                                            acacGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGCCTGACGCCTGTGGTTCACCCGACAGCCTACGTGCACCCCa                <  2:349000/135‑1 (MQ=255)
                                                                                                            acacGATTGACGACAAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGCCTGACGCCTGTGGTTCACCCGACAGCCTACGTGCACCCCa                <  6:55735/135‑1 (MQ=255)
                                                                                                            acacGATTGACGACAAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGCCTGACGCCTGTGGTTCACCCGACAGCCTACGTGCACCCCa                <  7:76867/135‑1 (MQ=255)
                                                                                                             cacGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGCCTGACGCCTGTGGTTCACCCGACAGCCTACGTGCACCCCAgc              >  3:325349/1‑136 (MQ=255)
                                                                                                               cGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCAt                                                                              <  7:74177/70‑1 (MQ=255)
                                                                                                               cGATTGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCAt                                                                              >  8:74177/1‑70 (MQ=255)
                                                                                                                  ttGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGCCTGACGCCTGTGGCTCACCCGACAGCCTACGTGCACCCCa                >  8:20483/1‑129 (MQ=255)
                                                                                                                  ttGACGACCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGCCTGACGCCTGTGGCTCACCCGACAGCCTACGTGCACCCCa                <  7:20483/129‑1 (MQ=255)
                                                                                                                     acgacCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGCCTGACGCCTGTGGTTCACCCGACAGCCTACGTGCACCCCAGCGCAGTcc       >  2:286068/1‑135 (MQ=255)
                                                                                                                     acgacCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGCCTGACGCCTGTGGTTCACCCGACAGCCTACGTGCACCCCAGCGCAGTcc       >  1:111790/1‑135 (MQ=255)
                                                                                                                        acCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGCCTGACGCCTGTGGTTCACCCGACAGCCTACGTGCACCCCAGCGCAGTCCTGa    >  1:31301/1‑135 (MQ=255)
                                                                                                                        acCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGCCTGACGCCTGTGGTTCACCCGACAGCCTACGTGCACCCCAGCGCAGTCCTGa    <  5:343166/135‑1 (MQ=255)
                                                                                                                        acCAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGCCTGACGCCTGTGGTTCACCCGACAGCCTACGTGCACCCCAGCGCAGTCCTGAt   >  3:260535/1‑136 (MQ=255)
                                                                                                                          cAAACAGCACCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGCCTGACGCCTGTGGTTCACCCGACAGCCTACGTGCACCCCAGCGCAGTCCTGATc  <  8:140954/135‑1 (MQ=255)
                                                                                                                               aGCACCTGATACAAGATCGACTGACATTCCAAATCAttt                                                                                             >  7:9883/1‑39 (MQ=255)
                                                                                                                               aGCACCTGATACAAGATCGACTGACATTCCAAATCAttt                                                                                             <  8:9883/39‑1 (MQ=255)
                                                                                                                                   |                                                                                                                             
TATGATCACAGCTCCAGTGCAATGCTTGCTGAAGAATCGTTTAACCTTTGCATTTTCTAGTACTTACAGCGGGTTTTTGCCTTGCAGCATTAATTCAACACAAGTGATACACGATTGACGACCAAACAGCATCTGATACAAGATCGACTGACATTCCAAATCATTTCGAGAGTGTTGCCATGCCTTGCTATCGACTGGACGGCCTGACGCCTGTGGTTCACCCGACAGCCTACGTGCACCCCAGCGCAGTCCTGATC  >  KT2440/3712625‑3712881

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: