| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | KT2440 | 1,805,331 | C→T | R48H (CGC→CAC) | dmlR_4 ← | HTH‑type transcriptional regulator DmlR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | KT2440 | 1,805,331 | 0 | C | T | 98.1% | 181.2 / NA | 53 | R48H (CGC→CAC) | dmlR_4 | HTH‑type transcriptional regulator DmlR |
| Reads supporting (aligned to +/- strand): ref base C (1/0); major base T (40/11); minor base G (1/0); total (42/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGCTGGCCAGGTCGCCCATGGCGCGCAGCGCTTCCTCACGGCCATCCTGCAAGCGTTGGCAATGCTGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCGGGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAATTCGTCGATGCC > KT2440/1805206‑1805455 | cGCTGGCCAGGTCGCCCATGGCGCGCAGCGCTTCCTCACGGCCATCCTGCAAGCGTTGGCAATGCTGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGTGCGTTTGCa > 8:315061/1‑135 (MQ=255) gCTGGCCAGGTCGCCCATGGCGCGCAGCGCTTCCTCACGGCCATCCTGCAAGCGTTGGCAATGCTGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGTGCGTTTGCa < 6:111764/134‑1 (MQ=255) gCTGGCCAGGTCGCCCATGGCGCGCAGCGCTTCCTCACGGCCATCCTGCAAGCGTTGGCAATGCTGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGTGCGTTTGCa < 1:38822/134‑1 (MQ=255) tGGCCAGGTCGCCCATGGCGCGCCGCGCTTCCTCACGGCCATCCTGCAAGCGTTGGCAATGCTGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGGGCGGTTGCAGGc > 5:15544/1‑135 (MQ=255) tGGCCAGGTCGCCCATGGCGCGCAGCGCTTCCTCACGGCCATCCTGCAAGCGTTGGCAATGCTGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGTGCGTTTGCAGGc > 7:58226/1‑135 (MQ=255) tGGCCAGGTCGCCCATGGCGCGCAGCGCTTCCTCACGGCCATCCTGCAAGCGTTGGCAATGCTGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGTGCGTTTGCAGGc > 7:116146/1‑135 (MQ=255) tGGCCAGGTCGCCCATGGCGCGCAGCGCTTCCTCACGGCCATCCTGCAAGCGTTGGCAATGCTGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCGGCGATACAGCAGGTGCGTGTGCAGGc > 5:87123/1‑135 (MQ=255) tGGCCAGGTCGCCCATGGCGCGCAGCGCTTCCTCACGGCCATCCTGCAAGCGTTGGCAATGCTGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCAGGCGGGTGCTGCGATACAGCAGGTGCGTTTGCAGGc > 7:114185/1‑135 (MQ=255) ggCCAGGTCGCCCATGGCGCGCAGCGCTTCCTCACGGCCATCCTGCAAGCGTTGGCAATGCTGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGTGCGTTTGCAGGCg > 8:191814/1‑135 (MQ=255) ggCCAGGTCGCCCATGGCGCGCAGCGCTTCCTCACGGCCATCCTGCAAGCGTTGGCAATGCTGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGTGCGTTTGCAGGCg > 7:305208/1‑135 (MQ=255) gCCAGGTCGCCCATGGCGCGCAGCGCTTCCTCACGGCCATCCTGCAAGCGTTGGCAATGCTGCAGGAAGGTCTGCCCTGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGTGCGTTTGCAGGCgg > 8:169210/1‑135 (MQ=255) aGCGCTTCCTCACGGCCATCCTGCAAGCGTTGGCAATGCTGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGTGCGTTTGCAGGCGGTCCTCCAGCCGGGCGATCTGc < 3:146777/135‑1 (MQ=255) ccATCCTGCAAGCGTTGGCAATGCTGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGTGCGTTTGCAGGCGGTCCTCCCGCCGGGCGATCTGCCGGCTGATGTGCGa > 6:147677/1‑134 (MQ=255) aTCCTGCAAGCGTTGGCAATGCTGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGTGCGTTTGCAGGCGGTCCTCCAGCCGGGCGATCTGCCGGCTGATGTGCGATGa < 5:288848/135‑1 (MQ=255) cTGCAAGCGTTGGCAATGCTGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGTGCGTTTGCAGGCGGTCCTCCAGCCGGGCGCTCTGCCGGCGGATGTGCGATGAgg > 5:96019/1‑134 (MQ=255) cTGCAAGCGTTGGCAATGCTGCAGGAAGGTCTGCCCGGCTTCGCTCAGCGTTACCCTGCGGGTGCTGCGATACAGCAGGTGCGTTTGCAGGCGGTCCTCCAGCCGGGCGATCTGCAGGATGAGGTGCGATGAgg > 2:207296/1‑134 (MQ=255) tGCAAGCGTTGGCAATGCTGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACCGCAGGTGCGTTTGCAGGCGGTCCTCCAGCCGGGCGATCTGCCGGCTGATGTGCGATGAGGac > 2:324627/1‑134 (MQ=255) tGCAAGCGTTGGCAATGCTGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGTGCGTTTGCAGGCGGTCCTCCAGCCGGGCGATCTGCCGGCTGATGTGCGATGAGGaa > 1:134171/1‑135 (MQ=255) tGCAAGCGTTGGCAATGCTGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGTGCGTTTGCAGGCGGTCCTCCAGCCGGGCGATCTGCCGGCTGATGTGCGATGAGGaa > 6:155596/1‑135 (MQ=255) aaGCGGTGGCAATGCTGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGTGCGTTTGCAGGCGGGCCTCCAGCCGGGCGATCTGCCGGCTGATGTGCGATGAGGAAAcc < 6:316050/135‑1 (MQ=255) gCGTTGGCAATGCTGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGTGCGTTTGCAGGCGGTCCTCCAGCCGGGCGATCTGCCGGCTGATGTGCGATGAGGAAAcccc > 6:117391/1‑135 (MQ=255) gTTGGCAATGCTGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGTGCGTTTGCAGGCGGTCCTCCAGCCGGGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCa > 3:177477/1‑135 (MQ=255) aaTGCTGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGTGCGTTTGCAGGCGGTCCTCCAGCCGGGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGtt > 1:99622/1‑135 (MQ=255) aaTGCTGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGTGCGTTTGCAGGCGGTCCTCCAGCCGGGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGtt > 8:295773/1‑135 (MQ=255) tgcAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGTGCGTTTGCAGGCGGTCCTCCAGCCGGGCGATCTGCCGGCTGATGTGc < 5:186569/108‑1 (MQ=255) tgcAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGTGCGTTTGCAGGCGGTCCTCCAGCCGGGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTcggcg > 1:50064/1‑135 (MQ=255) tgcAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCAGGCGGGTGCTGCGATACAGCAGGTGAGTTTGCAGGCGGTCCTCCAGCCGGGCGATCTGCCGGCTGATGTGc > 6:186569/1‑108 (MQ=255) aGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGTGCGTTTGCAGGCGGTCCTCCAGCCGGGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTcggcggcg < 5:147677/135‑1 (MQ=255) ccGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGTGCGTTTGCAGGCGGTCCTCCAGCCGGGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTgg > 3:160252/1‑135 (MQ=255) ggCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGTGCGTTTGCAGGCGGTCCTCCAGCCGGGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGcc > 7:129330/1‑135 (MQ=255) cGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGTGCGTTTGCAGGCGGTCCTCCAGCCGGGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGAtt > 4:66344/1‑135 (MQ=255) aGGGTTACCCGGCGGGTGCTGCGATACAGCAGGTGCGTTTGCAGGCGGTCCTCCAGCCGGGCGCTCGGCCGGCGGATGTGCGATGAGGAAACCCCCAGGCGGTCGGCGGCGGCCCTGAACAGGCCCGCTTCGGcc > 1:347026/1‑135 (MQ=255) aGGGTTACCCGGCGGGTGCTGCGATACAGCAGGTGCGTTTGCAGGCGGTCCTCCAGCCGGGCGATGTGCCGGCTGCGGTGCGATGAGGAAACCCCCCGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGcc > 2:279305/1‑135 (MQ=255) aGGGTTACCCGGCGGGTGCGGCGATACAGCACCTGAGTTTGCCGGCGGTCCTACAGCCCGGCCAACAGCCGGCGGAGGTGCGATTATGAAACCCCCACGCGTTCGGCGGGGGGAGTGAACAGGCCCCCTTCGGcc > 6:20802/1‑135 (MQ=255) ggcggGTGCTGCGATACAGCAGGTGCGTTTGCAGGCGGTCCTCCAGCCGGGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACaa > 5:190525/1‑135 (MQ=255) ggcggGTGCTGCGATACAGCAGGTGCGTTTGCAGGCGGTCCTCCAGCCGGGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACa > 5:333231/1‑134 (MQ=255) ggcggGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCGGGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACaa > 7:66728/1‑135 (MQ=255) gggctgcGAGACAGCAGGTGCGGGTGCAGGCGGTCCTCCAGCCGGGCGCGCTGCCGGCGGATGGGCGCTGCGGCACCCCCCAGGCGGTCGGCGGCGGCAGTGCACTGGCCCGAGTCGGCCCCGGCGCCAACTtcg > 4:176321/3‑135 (MQ=255) gTGCTGCGATACAGCAGGTGCGTTTGCAGTCGGTCCTCCAGCCGGGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAATtcg > 5:292747/1‑135 (MQ=255) gTGCTGCGATACAGCAGGTGCGTTTGCAGGCGGTCCTCCAGCCGGGCGATCTGCCGGCTGATGTGCGATGAGGCAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCCCGGCGACAAATtcg > 1:48255/1‑135 (MQ=255) gTGCTGCGATACAGCAGGTGCGTTTGCAGGCGGTCCTCCAGCCGGGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAATtcg > 8:342987/1‑135 (MQ=255) gTGCTGCGATACAGCAGGTGCGTTTGCAGGCGGTCCTCCAGCCGGGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAATtcg > 3:92533/1‑135 (MQ=255) gTGCTGCGATACAGCAGGTGCGTTTGCAGGCGGTCCTCCAGCCGGGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAATtcg > 6:93430/1‑135 (MQ=255) gTGCTGCGATACAGCAGGTGCGTTTGCAGGCGGTCCTCCAGCCGGGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAATtcg > 5:62632/1‑135 (MQ=255) gTGCTGCGATACAGCAGGTGCGTTTGCAGGCGGTCCTCCAGCCGGGCGATCTGCCGGCGGATGTGTGATGAGGCAACCCCCAGTCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACCAATtcg > 5:198651/1‑135 (MQ=255) gTGCTGCGATACAGCAGGTGCGTTTGCAGGCGGTCCTCCAGCCGGGCGATCTGCCGGCGGATGTGCGTATAGGAAACCCCCAGGAGTTCGGCGGCGGCCGTGAACTGGCCCGAGTCGGCCCCGGCGACAAAttag > 4:201647/1‑133 (MQ=255) gTGCTGCGATACAGCAGGTGCGTGTGCAGGCGGTCATGCACCCGCGGGCTCTGCCCGGGGAAGTGGCGTGTGGAAACCCCCCCGCGATCGGCGGCCGCCCGGTACTGGCCCCCTTCGGCCACCCCGACcaaaaac > 2:180751/1‑131 (MQ=255) gcGATACAGCAGGTGCGTTTGCAGGCGGTCCTCCAGCCGGGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAATTCGTCGAt > 8:248717/1‑135 (MQ=255) cGATACAGCAGGTGCGTTTGCAGGCGGTCCTCCAGCCGGGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAATTCGTCGATg > 6:112742/1‑135 (MQ=255) gATACAGCAGGTGCGTTTGCAGGCGGTCCTCCAGCCGGGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAATTCGTCGAt < 4:177477/133‑1 (MQ=255) gATACAGCAGGTGCGTTTGCAGGCGGTCCTCCAGCCGGGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAATTCGTCGAt < 3:58434/133‑1 (MQ=255) gATACAGCAGGTGCGTTTGCAGGCGGTCCTCCAGCCGGGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAATTCGTCGAt < 8:305208/133‑1 (MQ=255) aTACAGCAGGTGCGTTTGCAGTCGGTCCTCCAGCCGGGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAATTCGTCGATGcc < 6:292747/135‑1 (MQ=255) | CGCTGGCCAGGTCGCCCATGGCGCGCAGCGCTTCCTCACGGCCATCCTGCAAGCGTTGGCAATGCTGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCGGGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAATTCGTCGATGCC > KT2440/1805206‑1805455 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |