| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | KT2440 | = 4918801 | 0 (0.000) | 47 (1.000) | 33/228 | NT | 100% | coding (6/789 nt) | soj_1 | Sporulation initiation inhibitor protein Soj |
| ? | KT2440 | 5216408 = | NA (NA) | intergenic (‑50/+386) | rhaS_5/CJ019_01212 | HTH‑type transcriptional activator RhaS/IS110 family transposase ISPpu9 | |||||
TAGCTGGTCATCGAGCCGTGCGGGTCGAGGTCGACGACGACCACGCGCTTGCCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > KT2440/4918667‑4918801‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCC > KT2440/5216408‑5216540 TAGCTGGTCATCGAGCCGTGCGGGTCGAGGTCGACGACGACCACGTGCTTGCCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACT > 4:117137/1‑135TAGCTGGTCATCGAGCCGTGCGGGTCGAGGTCGACGACGACCACGCGCTTGCCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTACCGACACCACCTTTTTGATTGGCTACTGCCCAGACT > 2:191239/1‑135 AGCTGGTCATCGAGCCGTGCGGGTCGAGGTCGACGACGACCACGCGCTTGCCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTT < 4:200267/135‑1 TGGTCATCGAGCCGTGCGGGTCGAGGTCGACGACGACCACGCGCTTGCCGGCCTCGGCCCGCCGGCCGGCCAGGGGAATGGTAGTGGTGGTATTGCCGCCACCCCCTTTTTGATTGGGGACTGCCCAGACTTCT > 2:141563/1‑134 CATCGAGCCGTGCGGGTCGAGGTCGACGACGACCACGCGCTTGCCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAA < 1:39772/135‑1 CATCGAGCCGTGCGGGTCGAGGTCGACGACGACCACGCGCTTGCCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTACCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAA < 1:191239/135‑1 CGAGCCGTGCGGGTCGAGGTCGACGACGACCACGCGCTTGCCGGCCTCGGCCCGCAGGCCGGCCACGGCAAAGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACGGCCCAGACATCAATCAAAC > 6:242989/1‑134 CGGGTCGAGGTCGACGACGACCACGCGCTTGCCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAAC < 7:173079/135‑1 CGGGTCGAGGTCGACGACGACCACGCGCTTGCCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAAC < 5:242989/135‑1 CGGGTCGAGGTCGACGACGACCACGCGCTTGCCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAAC < 7:83488/135‑1 GGGTCGAGGTCGACGACGACCACGCGCTTGCCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACC > 2:235393/1‑135 GTCGAGGTCGACGACGACCACGCGCTTGCCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTGTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCC > 7:66573/1‑134 CGACGACGACCACGCGCTTGCCGGCCTCGGCCCGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTT > 2:257957/1‑135 CGACGACGACCACGCGCTTGCCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCT > 7:104166/1‑107 CGACGACGACCACGCGCTTGCCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCT < 8:104166/107‑1 actCGCTTGCCGGCCTCGTCCAGAAGGCCGGCCAGGGCAATGGTAGGGTTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCAAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAA < 5:38462/132‑1 ACGCGCTTGCCGGCCTCGGCCAGCAGGCCGGCCCGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCGTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAA > 8:182139/1‑134 CCGGCCTCGGCCAGCAGGCCGGCCTGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCAAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGC < 4:179072/134‑1 CCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG < 5:217965/135‑1 CGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG < 8:247687/134‑1 CGGCCGCGGCCAGCAGGCCGGCCAGGGCAAGGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGC < 2:306324/135‑1 GGCCTCGGCCCGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCGGACACCACCTTTTTGATTGGCTTCTGCCCAGCCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCGAGCGAAAAAACCGGGCGCG > 1:178253/1‑135 CCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGCCCCCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCCCTGTTCTTTCGAGCGAAAAAAACAGGCGCGCGGGGTCA > 1:187793/1‑135 GCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGG < 1:304157/135‑1 GCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGAATGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGG < 3:165302/135‑1 GGGCAATGGTCGTGGTGGTCTTCCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAACCAGGCGCGCGGGGTCAATGGCGGCGAAGTGT < 7:128649/135‑1 GGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGT < 4:125026/135‑1 GGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGT < 1:84047/135‑1 GGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGT < 1:257957/135‑1 GGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGT < 8:214422/135‑1 GGGCAATGGTAGTGGTGGGCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGGCAATGGCGGCGAAGTGT < 6:296552/135‑1 GGCAATGGGAGTGGGGGTCTTGCCGACACCACCTTTTTGATTTGATACTGCACAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGTCGAAGTGTT < 6:158951/135‑1 GCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTT < 2:330049/134‑1 CAATGGTATGGGGGGACTTGCCGACACGAGCTTTTGTTTTGGCTACTGCCCATAATTCAATCAAACAAAAGATAACCCCCTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCA < 2:165306/135‑1 AATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAGAATACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCAC > 3:127522/1‑135 ATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACT < 4:169925/135‑1 TAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTT > 8:136440/1‑134 AGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCT < 6:115527/135‑1 TGGTTGTCTTGCAGACACCACCTTTTTGATTGGCTACTGCCCTGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTA < 7:121950/134‑1 GTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATAC > 4:199620/1‑135 GGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGT < 4:61442/135‑1 GTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTG < 1:235393/135‑1 TTGCCGACACCACGTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGATAAAAACAGGCGCGCGGGGTCTATGGCGGCGAAGTGTTCCCGGATCTATACGTGGTC > 8:3968/1‑135 TTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAACCAGGCGCGCGGGGTCAATGGCGGCGAAGTGGTCACTCTTGTATACGTGGTC > 2:156604/1‑135 CACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAA < 4:158771/135‑1 CTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTG > 7:209953/1‑135 TTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGC < 1:79655/129‑1 TTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGC > 2:79655/1‑129 TTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCG < 7:76882/134‑1 TTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCG < 8:66573/134‑1 GATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGAGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGCCA > 5:144980/1‑135 CCCAGACTTCTATCAAACAAACTATAAACCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTACACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCC < 6:5857/135‑1 CCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCC < 1:79280/135‑1 CCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCG > 8:192510/1‑135 CTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCC < 5:171183/135‑1 TAGCTGGTCATCGAGCCGTGCGGGTCGAGGTCGACGACGACCACGCGCTTGCCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > KT2440/4918667‑4918801‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCC > KT2440/5216408‑5216540 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |