| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | KT2440 | = 3542695 | 19 (0.490) | 20 (0.530) | 17/224 | NT | 57.8% | coding (970/1467 nt) | betA_1 | Oxygen‑dependent choline dehydrogenase |
| ? | KT2440 | 3543005 = | 11 (0.290) | coding (1280/1467 nt) | betA_1 | Oxygen‑dependent choline dehydrogenase | |||||
GTCGACGAGTACAAGGCCGGTAAAGGCAATGTCACCGCCTCCTTGCTGGCCGATGTGCAAACTTATGGCCGCACTGCCGAGGTGAAGTATTTTCTCGAGAGCCTGGCCTGCGACATGGGGTTTGCCAGCAAGGTCGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > KT2440/3542557‑3542695‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcctCGCCGCAGTTCGGTGTGGTCGATGCCAATTGCAAGGTGTTCGGTACCGAAAACCTGTATGTCGCCGGCAGCAGCATTTTTGCCAAGGGCGGCGCCTCCAACCCGACCATGCCGCTGTTGCAATTTGCCTTGCGG > KT2440/3543005‑3543138 GTCGACGAGTACAAGGCCGGTAAAGGCAATGTCACCGCCTCCTTGCTGGCCGATGTGCAAACTTATGGCCGCACTGCCGAGGTGAAGTATTTTCTCGAGAGCCTGGCCTGCGACATGGGGTTTGCCAGCAAGGTC > 2:193810/1‑135 ACGAGTACAAGGCCGGTAAAGGCAATGTCACCGCCTCCTTGCTGGCCGATGTGCAAACTTATGGCCGCACTGCCGAGGTGAAGTATTTTCTCGAGAGCCTGGCCTGCGACATGGGGTTTGCCAGCAAGGTCGCCTC < 7:5484/136‑1 ACAAGGCCGGTAAAGGCAATGTCACCGCCTCCTTGCTGGCCGATGTGCAAACTTATGGCCGCACTGCCGAGGTGAAGTATTTTCTCGAGAGCCTGGCCTGCGACATGGGGTTTGCCAGCAAGGTCGCCTCGCCGC < 2:160760/135‑1 CCGGTAAAGGCAATGTCACCGCCTCCTTGCTGGCCGATGTGCAAACTTATGGCCGCACTGCCGAGGTGAAGTATTTTCTCGAGAGCCTGGCCTGCGACATGGGGTTTGCCAGCAAGGTCGCCTCGCCGCAGTTCG < 2:160662/135‑1 TAAAGGCAATGTCACCGCCTCCTTGCTGGCCGATGTGCAAACTTATGGCCGCACTGCCGAGGTGAAGTATTTTCTCGAGAGCCTGGCCTGCGACATGGGGTTTGCCAGCAAGGTCGCCTCGCCGCAGTTCGGTGT > 5:196537/1‑135 AAGGCAATGTCACCGCCTCCTTGCTGGCCGATGTGCAAACTTATGGCCGCACTGCCGAGGTGAAGTATTTTCTCGAGAGCCTGGCCTGCGACATGGGGTTTGCCAGCAAGGTCGCCTCGCCGCAGTTCGGTGTGG > 3:177622/1‑135 AGGCAATGTCACCGCCTCCTTGCTGGCCGATGTGCAAACTTATGGCCGCACTGCCGAGGTGAAGTATTTTCTCGAGAGCCTGGCCTGCGACATGGGGTTTGCCAGCAAGGTCGCCTCGCCGCAGTTCGGTGTGG < 4:90301/134‑1 CCGCCTCCTTGCTGGCCGATGTGCAAACTTATGGCCGCACTGCCGAGGTGAAGTATTTTCTCGAGAGCCTGGCCTGCGACATGGGGTTTGCCAGCAAGGTCGCCTCGCCGCAGTTCGGTGTGGTCGATGCCAATT < 6:196537/135‑1 GCCTCCTTGCTGGCCGATGTGCAAACTTATGGCCGCACTGCCGAGGTGAAGTATTTTCTCGAGAGCCTGGCCTGCGACATGGGGTTTGCCAGCAAGGTCGCCTCGCCGCAGTTCGGTGTGGTCGATGCCAATTG > 2:192684/1‑134 GATGTGCAAACTTATGGCCGCACTGCCGAGGTGAAGTATTTTCTCGAGAGCCTGGCCTGCGACATGGGGTTTGCCAGCAAGGTCGCCTCGCCGCAGTTCGGTGTGGTCGATGCCAATTGCAAGGTGTTCGGTACC < 1:192684/135‑1 CCGCACTGCCGAGGTGAAGTATTTTCTCGAGAGCCTGGCCTGCGACATGGGGTTTGCCAGCAAGGTCGCCTCGCCGCAGTTCGGTGTGGTCGA < 1:130267/93‑1 CCGCACTGCCGAGGTGAAGTATTTTCTCGAGAGCCTGGCCTGCGACATGGGGTTTGCCAGCAAGGTCGCCTCGCCGCAGTTCGGTGTGGTCGA > 2:130267/1‑93 AGGTGAAGTATTTTCTCGAGAGCCTGGCCTGCGACATGGGGTTTGCCAGCAAGGTCGCCTCGCCGCAGTTCGGTGTGGTCGATGCCAATTGCAAGGTGTTCGGTACCGAAAACCTGTATGTCGCCGGCAGCAGCA > 5:196392/1‑135 AGGTGAAGTATTTTCTCGAGAGCCTGGCCTGCGACATGGGGTTTGCCAGCAAGGTCGCCTCGCCGCAGTTCGGTGTGGTCGATGCCAATTGCAAGGTGTTCGGTACCGAAAACCTGTATGTCGCCGGCAGCAGCA > 5:64174/1‑135 AAGTATTTTCTCGAGAGCCTGGCCTGCGACATGGGGTTTGCCAGCAAGGTCGCCTCGCCGCAGTTCTGTGTGGTCGATGCCAATTGCAAGGTGTTCGGTAACGAGAACCTGTATGTCGCAGGCAGCAGCATATTT > 5:256580/1‑135 CGAGAGCCTGGCCTGCGACATGGGGTTTGCCAGCAAGGTCGCCTCGCCGCAGTTCGGTGTGGTCGATGCCAATTGCAAGGTGTTCGGTACCGAAAACCTGTATGTCGCCGGCAGCAGCATTTTTGCCAAGGGCGG > 2:149690/1‑135 GCCTGGCCTGCGACATGGGGTTTGCCAGCAAGGTCGCCTCGCCGCAGTTCGGTGTGGTCGATGCCAATTGCAAGGTGTTCGGTACCGAAAACCTGTATGTCGCCGGCAGCAGCATTTTTGCCAAGGGCGGCGCCT > 6:228224/1‑135 CCTGCGACATGGGGTTTGCCAGCAAGGTCGCCTCGCCGCAGTTCGGTGTGGTCGATGCCAATTGCAAGGTGTTCGGTACCGAAAACCTGTATGTCGCCGGCAGCAGCATTTTTGCCAAGGGCGGCGCCTCCAACC < 1:113625/135‑1 CAGCAAGGTCGCCTCGCCGCAGTTCGGTGTGGTCGATGCCAATTGCAAGGTGTTCGGTACCGAAAACCTGTATGTCGCCGGCAGCAGCATTTTTGCCAAGGGCGGCGCCTCCAACCCGACCATGCCGCTGTTGCAA > 8:151570/1‑136 CAGCAAGGTCGCCTCGCCGCAGTTCGGTGTGGTCGATGCCAATTGCAAGGTGTTCGGTACCGAAAACCTGTATGTCGCCGGCAGCAGCATTTTTGCCAAGGGCGGCGCCTCCAACCCGACCATGCCGCTGTTGCAA > 8:181948/1‑136 CAGCAAGGTCGCCTCGCCGCAGTTCGGTGTGGTCGATGCCAATTGCAAGGTGTTCGGTACCGAAAACCTGTATGTCGCCGGCAGCAGCATTTTTGCCAAGGGCGGCGCCTCCAACCCGACCATGCCGCTGTTGC < 6:152397/134‑1 CAGCAAGGTCGCCTCGCCGCAGTTCGGTGTGGTCGATGCCAATTGCAAGGTGTTCGGTACCGAAAACCTGTATGTCGCCGGCAGCAGCATTTTTGCCAAGGGCGGCGCCTCCAACCCGACCATGCCGCTGTTGC < 1:149690/134‑1 GGTCGCCTCGCCGCAGTTCGGTGTGGTCGATGCCAATTGCAAGGTGTTCGGTACCGAAAACCTGTATGTCGCCGGCAGCAGCATTTTTGCCAAGGGCGGCGCCTCCAACCCGACCATGCCGCTGTTGCAATTTGC > 1:208132/1‑135 GCCTCGCCGCAGTTCGGTGTGGTCGATGCCAATTGCAAGGTGTTCGGTACCGAAAACCTGTATGTCGCCGGCAGCAGCATTTTTGCCAAGGGCGGCGCCTCCAACCCGACCATGCCGCTGTTGCAATTTGCCTTGC < 8:215455/136‑1 TCGCCGCAGTTCGGTGTGGTCGATGCCAATTGCAAGGTGTTCGGTACCGAAAACCTGTATGTCGCCGGCAGCAGCATTTTTGCCAAGGGCGGCGCCTCCAACCCGACCATGCCGCTGTTGCAATTTGCCTTGCGG > 3:190460/1‑135 GTCGACGAGTACAAGGCCGGTAAAGGCAATGTCACCGCCTCCTTGCTGGCCGATGTGCAAACTTATGGCCGCACTGCCGAGGTGAAGTATTTTCTCGAGAGCCTGGCCTGCGACATGGGGTTTGCCAGCAAGGTCGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > KT2440/3542557‑3542695‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcctCGCCGCAGTTCGGTGTGGTCGATGCCAATTGCAAGGTGTTCGGTACCGAAAACCTGTATGTCGCCGGCAGCAGCATTTTTGCCAAGGGCGGCGCCTCCAACCCGACCATGCCGCTGTTGCAATTTGCCTTGCGG > KT2440/3543005‑3543138 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |