New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? KT2440 = 49188010 (0.000)48 (1.100) 34/248 0.1 100% coding (6/789 nt) soj_1 Sporulation initiation inhibitor protein Soj
?KT2440 5216408 = NA (NA)intergenic (‑50/+386) rhaS_5/CJ019_01212 HTH‑type transcriptional activator RhaS/IS110 family transposase ISPpu9

AGCTGGTCATCGAGCCGTGCGGGTCGAGGTCGACGACGACCACGCGCTTGCCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  KT2440/4918668‑4918801
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCA  >  KT2440/5216408‑5216541
                                                                                                                                                                                                                                                                            
AGCTGGTCATCGAGCCGTGCGGGTCGAGGTCGACGACGACCACGCGCTTGCCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTT                                                                                                                                       <  4:57346/135‑1
     GTCATCGAGCCGTGCGGGTCGAGGTCGACGACGACCACGCGCTTGCCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGAGACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATC                                                                                                                                  <  6:161454/135‑1
     GTCATCGAGCCGTGCGGGTCGAGGTCGACGACGACCACGCGCTTGCCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATC                                                                                                                                  <  1:248204/135‑1
              CCGTGCGGGTCGAGGTCGACGACGACCACGCGCTTGCCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAG                                                                                                                         <  7:136585/135‑1
              CCGTGCGGGTCGAGGTCGACGACGACCACGCGCTTGCCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAG                                                                                                                         <  7:45184/135‑1
                 TGCGGGGCGAGGTCGACGACGACCACGCGCTTGCCGGCCTCGGCCAGCAGGCCGGCCAGGGAAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATA                                                                                                                      <  8:259998/135‑1
                   CGGGTCGAGGTCGACGACGACCACGCGCTTGCCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAAC                                                                                                                    <  1:192594/135‑1
                    GGGTCGAGGTCGACGACGACCACGCGCTTGCCGGCCTCGGCCAGCCGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACC                                                                                                                   >  3:57189/1‑135
                    GGGTCGAGGTCGACGACGACCACGCGCTTGCCGGCCTCGGCCAGCAGGCCGGCCATGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACC                                                                                                                   <  7:58822/135‑1
                    GGGTCGAGGTCGACGACGACCACGCGCTTGCCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACTCCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACC                                                                                                                   <  7:189158/135‑1
                     gggCGAGGTCGACGACGACCACGCGCTTGCCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCC                                                                                                                  <  8:159625/132‑1
                         GAGGTCGACGACGACCACGCGCTTGCCGGCCTCGGGCAGCAGGCCGGGCAGGGCAATGGTAGTGGTGGTATTGCCGACACCCCCTTTTTTATTGGCTACTGCCCAGACATCAATCAAACAAAAGATAACCAACTG                                                                                                              >  4:60707/1‑135
                                ACGACGACCACGCGCTTGCCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTC                                                                                                       <  2:57743/135‑1
                                                  CCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATTGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG                                                                                     <  6:14791/135‑1
                                                            CCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCACACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCA                                                                           >  2:195010/1‑135
                                                                   GCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGG                                                                    <  3:28046/135‑1
                                                                   GCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAAC                                                                                                                    >  7:202334/1‑87
                                                                   GCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAAC                                                                                                                    <  8:202334/87‑1
                                                                      GGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGA                                                                 <  1:109884/135‑1
                                                                         CAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAACCAGGCGCGCGGGGTCAATGGCGGCGAAGT                                                              <  4:282193/135‑1
                                                                         CAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGT                                                              <  7:243298/135‑1
                                                                         CAGGGCAAAGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCACAGACTTCTATCAAACAAAACATAACCCACTGTTCATTATAGAGAAAAAAACAGGCGCGCGGGGTCAATCGAGCCGAAGT                                                              >  8:111841/1‑135
                                                                           GGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGT                                                            <  7:110173/135‑1
                                                                           GGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGT                                                            <  7:80931/135‑1
                                                                           GGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGT                                                            <  1:266760/135‑1
                                                                           GGGCAATGGTAGGGGTGGTCTTGCCTACACCACTTTTTTGATTGGCTACTGCCCAGACTTCAAACAAAAAAAAGAAAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGGCAATGGCGGCGAAGTGT                                                            <  5:171403/135‑1
                                                                            tGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCTGACTTGTATCAAACAAAATATAACCCACTGTTCATTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTT                                                           <  7:111841/134‑1
                                                                            GGCATTGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTTCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCTCGCGGGGTCAATGGCGGCGAAGTGTT                                                           <  3:22979/135‑1
                                                                                       TGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTAT                                                <  7:265201/135‑1
                                                                                         GTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTAACTCTTCTATAC                                              >  7:160133/1‑135
                                                                                          TGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACG                                             <  1:95100/135‑1
                                                                                           GGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGT                                            <  3:60707/135‑1
                                                                                               TTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTC                                        >  3:122542/1‑135
                                                                                               TTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTC                                        >  8:118574/1‑135
                                                                                               TTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGGGGTC                                        >  1:55186/1‑135
                                                                                               TTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGC                                                                                  >  7:291203/1‑93
                                                                                               TTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGC                                                                                  <  8:291203/93‑1
                                                                                                 GCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTC                                        >  8:284061/1‑133
                                                                                                    GACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAG                                    >  1:254949/1‑134
                                                                                                          ACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGT                                                              >  1:216180/1‑102
                                                                                                          ACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGT                                                              <  2:216180/102‑1
                                                                                                             TTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGC                          <  7:284061/135‑1
                                                                                                                TTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCG                        <  3:3943/134‑1
                                                                                                                TTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCG                        <  7:66924/134‑1
                                                                                                                         TACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCATCTATACGTGGTCACAGCAACCTGTGCCGACAGGGATTA              >  4:21716/1‑135
                                                                                                                               CCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCG        <  7:173787/135‑1
                                                                                                                               CCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCC         <  2:254949/134‑1
                                                                                                                                 AGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGAT      >  1:101159/1‑135
                                                                                                                                    CTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCC   <  7:64377/135‑1
                                                                                                                                    CTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGT                                                            >  2:35073/1‑78
                                                                                                                                    CTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGT                                                            <  3:247027/78‑1
                                                                                                                                    CTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGT                                                            <  1:35073/78‑1
                                                                                                                                    CTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGT                                                            >  4:247027/1‑78
                                                                                                                                    CTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAA                                                                          <  6:177191/64‑1
                                                                                                                                    CTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAA                                                                          >  5:177191/1‑64
                                                                                                                                    CTTCTAGCAAACAAAAGATAACCCACTGTTCTTTATAGAGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACCGCGATTAACGCCGATGCC   >  6:243527/1‑135
                                                                                                                                     TTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCA  >  1:152449/1‑135
                                                                                                                                                                                                                                                                            
AGCTGGTCATCGAGCCGTGCGGGTCGAGGTCGACGACGACCACGCGCTTGCCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  KT2440/4918668‑4918801
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCA  >  KT2440/5216408‑5216541

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.