| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | KT2440 | = 3141374 | 38 (1.020) | 4 (0.110) | 3/236 | 4.1 | 11.1% | coding (111/561 nt) | msuE | FMN reductase (NADPH) |
| ? | KT2440 | 4345498 = | 28 (0.790) | coding (331/360 nt) | CJ019_04083 | hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGCAAGGAGGGATGAGCATGAACGCACGTGTTATCAGGGTCGTGGTGGTGTCCGGCAGCCTGCGGGCCCCATCACGCACCCATGGTCTGCTGCAGGCCCTGGTGGAGCGGCTGCCGGCCGTGTTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > KT2440/3141247‑3141374‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgccgCAGTGCGCACATCGCCAAGGCGCAGCGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTAC > KT2440/4345498‑4345630 GGCAAGGAGGGATGAGCATGAACGCACGTGTTATCAGGGTCGTGGTGGTGTCCGGCCGCCGGCGGGCCCCCACCAGCACCCCTGGGCTGCTGCAGGCCCGGGGGGAGCGGCTGCCGGCCGGGTTGCCGCggcgg > 1:170844/1‑129GGCAAGGAGGGATGAGCATGAACGCACGTGTTATCAGGGTCGTGGTGGTGTCCGGCAGCCGGCGGGCCCCCACACGCCCCCCAGGTCTGCGGCAGGCCCTGGGGGCGCGGCTGCCCGCCGTGTTGCCGGAGcgggc > 4:41050/1‑131 TCACGCACCCATGGTCTGCTGCAGGCCCTGGTGGAGCGGCTGCCGGCCGTGTTG < 7:236487/54‑1 TCACGCACCCATGGTCTGCTGCAGGCCCTGGTGGAGCGGCTGCCGGCCGTGTTG > 8:236487/1‑54 TGCAGGCCCTGGTGGAGCGGCTGCCGGCCGTGTTGCCGCAGTGCGCACATCGCCAAGGCGCAGCGGGAAGTTATTCAGCCGCTC > 3:31429/1‑84 TGCAGGCCCTGGTGGAGCGGCTGCCGGCCGTGTTGCCGCAGTGCGCACATCGCCAAGGCGCAGCGGGAAGTTATTCAGCCGCTC < 4:31429/84‑1 CCGCAGTGCGCACATCGCCAAGGCGCAGCGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTAC < 2:52423/136‑1 CCGCAGTGCGCACATCGCCAAGGCGCAGCGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTAC > 4:167248/1‑136 CCGCAGTGCGCACATCGCCAAGGCGCAGCGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTAC < 7:114542/136‑1 GGCAAGGAGGGATGAGCATGAACGCACGTGTTATCAGGGTCGTGGTGGTGTCCGGCAGCCTGCGGGCCCCATCACGCACCCATGGTCTGCTGCAGGCCCTGGTGGAGCGGCTGCCGGCCGTGTTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > KT2440/3141247‑3141374‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgccgCAGTGCGCACATCGCCAAGGCGCAGCGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTAC > KT2440/4345498‑4345630 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |