New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	KT2440	4201049 =	59 (1.390)	4 (0.090)	4/234	NT	6.1%	coding (372/6624 nt)	CJ019_03944	hypothetical protein
	?	KT2440	= 4292766	65 (1.530)					coding (130/315 nt)	CJ019_04027	hypothetical protein

TTGGTTTTAGATGGCCCGTTGCTTAGTCGTCTGACCGAAGCTGAGCTTTCGACATTCACCTTCGTCTTCGAGGCGGATGACAAAGAAGCCGAGAGTGGCAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  KT2440/4201150‑4201049 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCTGAAATTGCCGTCATCCGCCACCTGACAGAGCTGCTGGACATTGAACGGGATGCCCGAAGGGAGGCGCAGGCAAAAGCTGATCTGCTCG  <  KT2440/4292766‑4292676                                                                                                                                                                                                   TTGGTTTTAGATGGCCCGTTGCTTAGTCGTCTGACCGAAGCTGAGCTTTCGACATTCACCTTCGTCTTCGAGGCGGATGACAAAGAAGCCGAGAGTGGCAGAGCTGAAATTGCCGTCATCCGCCACCTGACAGAG                                                            >  6:69211/1‑135                                 GACCGAAGCTGAGCTTTCGACATTCACCTTCGTCTTCGAGGCGGATGACAAAGAAGCCGAGAGTGGCAGAGCTGAAATTGCCGTCATCCGCCACCTGACAGAGCTGCTGGAGATTGAACGGGATGCCCGAAGGGA                            >  8:239793/1‑135                                   CCGAAGCTGAGCTTTCGACATTCACCTTCGTCTTCGAGGCGGATGACAAAGAAGCCGAGAGTGGCAGAGCTGAAATTGCCGTCATCCGCCACCTGACAGAGCTGCTGGACATTGAACGGGATGCCCGAAGGGAG                           <  5:69211/134‑1                                                           CCTTCGTCTTCGAGGCGGATGACAAAGAAGCCGAGAGTGGCAGAGCTGAAATTGCCGTCATCCGCCACCTGACAGAGCTGCTGGACATTGAACGGGATGCCCGAAGGGAGGCGCAGGCAAAAGCTGATCTGCTCG  <  3:164710/135‑1                                                                                                                                                                                                   TTGGTTTTAGATGGCCCGTTGCTTAGTCGTCTGACCGAAGCTGAGCTTTCGACATTCACCTTCGTCTTCGAGGCGGATGACAAAGAAGCCGAGAGTGGCAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  KT2440/4201150‑4201049 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCTGAAATTGCCGTCATCCGCCACCTGACAGAGCTGCTGGACATTGAACGGGATGCCCGAAGGGAGGCGCAGGCAAAAGCTGATCTGCTCG  <  KT2440/4292766‑4292676

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.