| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | KT2440 | 5,284,713 | T→G | 20.5% | F162C (TTT→TGT) | cmpR_6 → | HTH‑type transcriptional activator CmpR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | KT2440 | 5,284,713 | 0 | T | G | 20.5% | 135.7 / 3.2 | 78 | F162C (TTT→TGT) | cmpR_6 | HTH‑type transcriptional activator CmpR |
| Reads supporting (aligned to +/- strand): ref base T (8/51); new base G (16/2); total (24/54) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.31e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AAACCCTGGAGTCAGCGTGGATGTGCAAGAGCTGCCGAGTTTGCGCATCGTGCAGGCAATTACCCAAGGCATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGCCACAGGCCCACCCCCTGGCCAGTGCGCTGGCGCCAAGCTTCGTCGACAGCCTGGCCCATGGCTATGTCGGCCTGGGGGCCGGCAGTGCACTG > KT2440/5284582‑5284834 | aaaCCCTGGAGTCAGCGTGGATGTGCAAGAGCTGCCGAGTTTGCGCATCGTGCAGGCAATTACCCAAGGCATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCg < 7:24098/135‑1 (MQ=255) cccTGGAGTCAGCGTGGATGTGCAAGAGCTGCCGAGTTTGCGCATCGTGCAGGCAATTACCCAAGGCATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCgaga < 6:76024/135‑1 (MQ=255) aGTCAGCGTGGATGTGCAAGAGCTGCCGAGTTTGCGCATCGTGCAGGCAATTACCCAAGGCATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGAcc < 4:236768/134‑1 (MQ=255) aGTCAGCGTGGATGTGCAAGAGCTGCCGAGTTTGCGCATCGTGCAGGCAATTACCCAAGGCATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGAcc < 4:96314/134‑1 (MQ=255) aGTCAGCGTGGATGTGCAAGAGCTGCCGAGTTTGCGCATCGTGCAGGCAATTACCCAAGGCATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGAcc < 7:112052/134‑1 (MQ=255) cAGCGTGGATGCGCAAGAGCTGCCGAGTTTGCGCATCGTGCAGGCAATTACCCAAGGCATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCgc < 6:116972/134‑1 (MQ=255) gTGGATGTGCAAGAGCTGCCGAGTTTGCGCATCGTGCAGGCAATTACCCAAGGCATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTGTCGAGATGACCCgctggtg > 1:237173/1‑135 (MQ=255) tGGATGTGCAAGAGCTGCCGAGTTTGCGCATCGTGCAGGCAATTACCCAAGGCATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCgctggtgc > 2:269114/1‑135 (MQ=255) ggATGTGCAAGAGCTGCCGAGTTTGCGCATCGTGCAGGCAATTACCCAAGGCATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGCCACGGCCGTGTGGAGATGACCCccaggtgct > 3:87120/1‑135 (MQ=255) ggATGCGCAAGAGCTGCCGAGTTTGCGCATCGTGCAGGCAATTACCCAAGGCATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCgctggtgct < 3:352178/135‑1 (MQ=255) aggtgCAAGAGCTGCCGAGTTTGCGCATCGTGCAGGCAATTACCCAAGGCATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGCTGACCCgctggtgctgg < 8:12058/133‑1 (MQ=255) tgCAAGAGCTGCCGAGTTTGCGCATCGTGCAGGCAATTACCCAAGGCATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGa < 3:46877/135‑1 (MQ=255) cAAGAGCTGCCGAGTTTGCGCATCGTGCATGCAATTACCCAAGGCATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACg < 3:171747/135‑1 (MQ=255) aaGAGCTGCCGAGTTTGCGCATCGTGCAGGCAATTACCCAAGGCATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACg < 7:389064/134‑1 (MQ=255) aaGAGCTGCCGAGTTTGCGCATCGTGCAGGCAATTACCCAAGGCATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGc > 6:160885/1‑135 (MQ=255) aaGAGCTGCCGAGTTTGCGCATCGTGCAGGCAATTACCCAAGGCATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTGTGGAGCTGGACCGCGGGGGCTGGTGACgg > 2:297791/1‑134 (MQ=255) tGCCGAGTTTGCGCATCGTGCAGGCAATTACCCAAGGCATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGCCACAgg < 4:101043/135‑1 (MQ=255) tGCCGAGTTTGCGCATCGTGCAGGCAATTACCCAAGGCATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGCCACAgg < 1:269114/135‑1 (MQ=255) tGCCGAGTTTGCGCATCGTGCAGGCAATTACCCAAGGCATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGCCACAgg < 4:148446/135‑1 (MQ=255) tGCCGAGTTTGCGCATCGTGCAGGCAATTACCCAAGGCATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGCCACAgg < 1:67392/135‑1 (MQ=255) tGCCGAGTTTGCGCATCGTGCAGGCAATTACCCAAGGCATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGCCACAgg < 4:186393/135‑1 (MQ=255) tGCCGAGTTTGCGCATCGTGCAGGCAATTACCCAAGGCATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGCCACAgg < 2:237173/135‑1 (MQ=255) tGCCGAGTTTGCGCATCGTGCAGGCAATTACCCAAGGCATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTGTCGAGATGACCCGCTGGTGCTGGTGACGCCACAgg > 2:9732/1‑135 (MQ=255) aGTTTGCGCATCGTGCAGGCAATTACCCAAGGCATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGCCACAGGCCCAc < 5:318811/135‑1 (MQ=255) aGTTTGCGCATCGTGCAGGCAATTACCCAAGGCATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGCCACAGGCCCAc < 4:283567/135‑1 (MQ=255) cgcATCGTGCAGGCAATTACCCAAGGCATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGCCACAGGCCCACCCCCt < 3:87874/134‑1 (MQ=255) gCAGGCAATTACCCAAGGCATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGCCACAGGCCCACCCCCTGGCCAGTgc < 3:345183/135‑1 (MQ=255) ccccAGGCCTGGCCCTCCAGGGCATAGGGTCCACACCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGCCACAGGCCCACCCCCTGGCCAGTGCGCTGGCGCCaa < 3:239502/135‑1 (MQ=255) ccAAGGCATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGCCACAGGCCCCCCCCCTGGCCAGTGCGCTGGCGCCCAg > 6:74359/1‑135 (MQ=255) ccAAGGCATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGCCACAGGCCCACCCCCTGGCCAGTGCGCTGGCGCCAAg < 5:281605/135‑1 (MQ=255) ccAAGGCATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTGTCGAGATGACCCGCTGGTGCTGGTGACGCCACAGGCCCCCCCCCTGGCCAGTGCGCTGGCGCCAAg > 3:189546/1‑135 (MQ=255) ggCATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGCCACAGGCCCACCCCCTGGCCAGTGCGCTGGCGCCAAGCTtc < 7:293277/135‑1 (MQ=255) gCATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGCCACAGGCCCACCCCCTGGCCAGTGCGCTGGCGCCAAGCTtcg < 5:308088/135‑1 (MQ=255) gCATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTGTTGAGGTGACCCGCTGGTGCTGGTGCCGGCACCGGCCCCCCCCCTGGCCAGTGCGCAGGCGCCAAGcgagg > 8:186939/1‑131 (MQ=255) gCATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTGTCGAGATGACCCGCTGGTGCTGGTGACGCCACACGCCCCCCCCCAGGCCAGTGCGCTGGCGCCCAGCGtcg > 5:143173/1‑135 (MQ=255) gCATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTGTCGAGATGACCCGCTGGGGCTGGTGACGCCACAGGCCCCCCCCCTGGCCCGTGCGCTGGCGCCAACCAtcg > 8:39187/1‑135 (MQ=255) cagggCCGACCTGGGCATCGGGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGCCACAGGCCCACCCCCTGGCCAGTGCGCTGGCGCCAAGCTtcgg < 5:25662/132‑2 (MQ=255) cATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGTCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGCCACAGGCCCACCCCCTGGCCAGTGCGCTGGCGCCAAGCTtcgt < 7:114946/135‑1 (MQ=255) cATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGCCACAGGCCCACCCCCTGGCCAGTGCGCTGGCGCCAAGCTtcgt < 7:328080/135‑1 (MQ=255) aTGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTGTCGAGATTACCCCCGGGGGCTGGTGCCGCCCCAGGCCCCCCCCCAGGCCAGTGCGCTGGCGCCCAGCTtcgtc > 2:309613/1‑135 (MQ=255) aTGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTGGGGCGAGGACCCGCGGGGGAGGGTGCCGCCACCGCCCCCCCCCCCGGCCCCGGCGGCGGCGCCACGCGtcctc > 6:224849/1‑135 (MQ=255) ccGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGCCACAGGCCCACCCCCTGGCCAGTGCGCTGGCGCCAAGCTTCGTCGACa < 7:326212/135‑1 (MQ=255) ccGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGCCACAGGCCCACCCCCTGGCCAGTGCGCTGGCGCCAAGCTTCGTCGACa < 4:363752/135‑1 (MQ=255) ccGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGCCACAGGCCCACCCCCTGGCCAGTGCGCTGGCGCCAAGCTTCGTCGACa < 2:193100/135‑1 (MQ=255) ccGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGCCACAGGCCCACCCCCTGGCCAGTGCGCTGGCGCCAAGCTTCGTCGACa < 3:100205/135‑1 (MQ=255) ccGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGCGCTGGTGACGCCACAGGCCCACCCCCTGGCCAGTGCGCTGGCGCCAAGCTTCGTCGACa < 3:53662/135‑1 (MQ=255) cGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATTACCCCCTGGTGCTGGTGCAGCCACAGGCCCACCCCCAGGCCAGTGCGCGGGCGGCAACCATAGTCGACac > 4:100205/1‑134 (MQ=255) cGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGCCACAGGCCCCCCCCCAGGCCAGTGCGCTGGCGCCAAGCATCGTCGACac > 6:185821/1‑134 (MQ=255) cGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGCCACAGGCCCACCCCCTGGCCAGTGCGCTGGCGCCAAGCTTCGTCGACAg > 7:35583/1‑135 (MQ=255) tGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATTACCCGCTGGTGCTGGTGACGCCACAGGCCCCCCCCCTGGCCAGTGCGCTGTCGCCACGCTTCGTCGACAGCCTgg > 8:232557/1‑135 (MQ=255) tGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGCCACAGGCCCACCCCCTGGCCAGTGCGCTGGCGCCAAGCTTCGTCGACAGCCTgg < 2:111154/135‑1 (MQ=255) tGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTGTGGCGATGCCCCGCGGGTGCGGGTGCCGCCCCCGGCCCCCCCCCTCGCCACTGCGCGGGCGCCCACCATCCGCGCCAGCCTgg > 2:332514/1‑135 (MQ=255) cATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGCCACAGGCCCACCCCCTGGCCAGTGCGCTGGCGCCAAGCTTCGTCGACAGCCTGGCCCa < 7:364868/135‑1 (MQ=255) aTCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTGTGGAGAAGACCCGCCGGTGCTGGTGCCCCCACACGCCCCCCCCCCCGCCACTGCGCTGGAGCCCAGCATCGTAGCCCGCCAGGCCCaa > 8:296473/1‑134 (MQ=255) aTCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTGTCGAGATGCCCCGCTGGTGCTGGTGACGCCCCAGGCCCCCCCCCGGGCCACGGCGCTGGCGCCCAGCTGCGTCGACAGCCGGGcccct > 8:4158/1‑133 (MQ=255) ccACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTGTCGAGATGACCCGCTGGTGCTGGTGACGCCCCAGGCCCCCCCCCTGGCCAGTGCGCGGGCGCCAAGCGTCGTCGCCAGCCTGGCCCATGGCTATg > 7:315013/1‑135 (MQ=255) caGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTCTCGAGATGACCCGCTGGTGCTGGTGACGCCACAGGCCCACCCCCTGGCCAGTGCGCTGGCGCCAAGCTTCGTCGACAGCCTGGCCCATGGCTATGTCg < 1:326216/135‑1 (MQ=255) cccccAGCGAGCACCTGCAGACCCGGCCGTGTCGAGATGACCCGCGGGTGCTGGTGGCGCCCCACGCCCCCCCCCTGGCCCGTGCGCGGGCGCCCAGCGTCGTCGACCGCCAGGCCCCGGGCGTTGGCGGCCggg > 3:108460/1‑135 (MQ=255) gcccAGCTCGCCCCTGCCCAGCCGGCCGATTCGAGCTGCCCCGCTGGTGCTGGGGCCGCCACAGGCCCCCCCCCTGGCCCGGGCGCGGGCGCCAAGCTTCGTCGACAGCCTGGCCCATGGCTATGTCGGCCTggg < 1:386818/134‑1 (MQ=255) ccccAGCGCGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGCCACAGGCCCACCCCCTGGCCAGTGCGCTGGCGCCAAGCTTCGTCGACAGCCTGGCCCATGGCTATGTCGGCCTggg < 7:11858/135‑1 (MQ=255) ccccAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGCCACAGGCCCACCCCCTGGCCAGTGCGCTGGCGCCAAGCTTCGTCGACAGCCTGGCCCATGGCTATGTCGGCCTggg < 5:176924/135‑1 (MQ=255) ccccAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGCCACAGGCCCACCCCCTGGCCAGTGCGCTGGCGCCAAGCTTCGTCGACAGCCTGGCCCATGGCTATGTCGGCCTggg < 6:304919/135‑1 (MQ=255) ccccAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGCCACAGGCCCACCCCCTGGCCAGTGCGCTGGCGCCAAGCTTCGTCGACAGCCTGGCCCATGGCTATGTCGGCCTggg < 1:309613/135‑1 (MQ=255) ccccAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGCCACAGGCCCACCCCCTGGCCAGTGCGCTGGCGCCAAGCTTCGTCGACAGCCTGGCCCATGGCTATGTCGGCCTggg < 5:185821/135‑1 (MQ=255) ccccAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGGGCTGGTGACGCCACAGGCCCACCCCCTGGCCAGTGCGCTGGCGCCAAGCTTCGTCGACAGCCTGGCCCATGGCTATGTCGGCCTggg < 4:278/135‑1 (MQ=255) ccAGCGAGCACCTGCAGACCCGGCCGTGTCGCGCTGACCCGCGGGTGCTGGTGGCGCCACCGGCCCCCCCCCAGGCCCGTGCGCGGGCGCCCAGCGTCGTCGCCAGCCTGGCCCATGGCTATGTCGGCCgggggg > 2:303881/1‑135 (MQ=255) cAGCGAGCACCTGCAGACCCGGCCGTTGCGAGATGACCCGCTGGTGCTGGGGACGCCACAGGCCCACCCCCTGGCCAGTGCGCTGGCGCCAAGCTTCGTCGACAGCCTGGCCCATGGCTATGTCGGCCTGGGGGc < 5:185241/135‑1 (MQ=255) gCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGCCACAGGCCCACCCCCTGGCCAGTGCGCTGGCGCCAAGCTTCGTCGACAGCCTGGCCCATGGCTATGTCGGCCTGGGGGCCg < 4:208968/135‑1 (MQ=255) gcccACCGGCCGACCCGGCCGTTTCGACATGCCCCGCGGGTGCTGGTGACGCCACAGGCCCACCCCCTGGCCAGTGCGCTGGCGCCAAGCTTCGTCGACAGCCTGGCCCATGGCTATGTCGGCCTGGGGGCCg < 1:196985/130‑1 (MQ=255) aCCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGCCACAGGCCCACCCCCTGGCCAGTGCGCTGGCGCCAAGCTTCGTCGACAGCCTGGCCCATGGCTATGTCGGCCTGGGGGCCGGCAGTg < 7:98041/135‑1 (MQ=255) aCCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGCCACAGGCCCACCCCCTGGCCAGTGCGCTGGCGCCAAGCTTCGTCGACAGCCTGGCCCATGGCTATGTCGGCCTGGGGGCCGGCAGTg < 7:296473/135‑1 (MQ=255) aCCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGCCACAGGCCCACCCCCTGGCCAGTGCGCTGGCGCCAAGCTTCGTCGACAGCCTGGCCCATGGCTATGTCGGCCTGGGGGCCGGCAGTg < 7:8581/135‑1 (MQ=255) ccgtcAGCCCCGGCCGTTGCGCGCTGACCCGCTGGTGCTGGTGACGCCACAGGCCCACCCCCTGGCCAGGGCGCTGGCGCCAAGCTTCGTCGACAGCCTGGCCCATGGCTATGTCGGCCTGGGGGCCGGCAGTGc < 2:160876/131‑1 (MQ=255) ccggCAGACCCGGCCGTTTCGAGAAGACCCGCTGGTGCTGGTGACGCCACAGGCCCACCCCCTGGCCAGTGCGCTGGCGCCAAGCTTCGTCGACAGCCTGGCCCATGGCTATGTCGGCCTGGGGGCCGGCAGTGc < 7:330187/132‑1 (MQ=255) ccTGCCGACCCGGCCGGGTCGAGATGACCCGCTGGTGCTGGTGACGCCACAGGCCCACCCCCTGGCCAGTGCGCTGGCGCCAAGCTTCGTCGACAGCCTGGCCCATGGCTATGTCGGCCTGGGGGCCGGCAGTGc < 8:143458/135‑1 (MQ=255) cTGCAGACCCGGCCGTTTTGGGATGACCCGCTGGGGCGGGTGCCGCCCCACGCCCCCCCCCAGGCCACTGCGCGGGCGCCAAGCATAGTGGCCAGACGGGCCCAAGGGTATTTCGGCCTGGGGGGCGGGAGTgga > 8:330187/1‑133 (MQ=255) aGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGCCACAGGCCCACCCCCTGGCCAGTGCGCTGGCGCCAAGCTTCGTCGACAGCCTGGCCCATGGCTATGTCGGCCTGGGGGCCGGCAGTGCACTg < 7:200515/134‑1 (MQ=255) aGACCCGGCCGTGTCGAGATGACCCGCTGGTGCTGGTGACGCCACAGGCCCACCCCCTGGCCAGTGCGCTGGCGCCAAGCTTCGTCGACAGCCTGGCCCATGGCTATGTCGGCCTGGGGGCCGGCAGTGCACTg < 3:279169/134‑1 (MQ=255) | AAACCCTGGAGTCAGCGTGGATGTGCAAGAGCTGCCGAGTTTGCGCATCGTGCAGGCAATTACCCAAGGCATGGCCGACCTGGGCATCGTGTCCACAGCCGCCCCCAGCGAGCACCTGCAGACCCGGCCGTTTCGAGATGACCCGCTGGTGCTGGTGACGCCACAGGCCCACCCCCTGGCCAGTGCGCTGGCGCCAAGCTTCGTCGACAGCCTGGCCCATGGCTATGTCGGCCTGGGGGCCGGCAGTGCACTG > KT2440/5284582‑5284834 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |