Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | KT2440 | 1,806,731 | G→T | K10N (AAG→AAT) | yeiG → | S‑formylglutathione hydrolase YeiG |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | KT2440 | 1,806,731 | 0 | G | T | 98.0% | 175.2 / ‑5.3 | 49 | K10N (AAG→AAT) | yeiG | S‑formylglutathione hydrolase YeiG |
Reads supporting (aligned to +/- strand): ref base G (0/1); new base T (27/21); total (27/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.49e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01 |
CATCACCCACACGATGGGGCTGGAAGACATCAACAAGGCCTTCGACCTGATGCATGAAGGCAAGAGCATCCGTAGCGTGATCCACTTCTGAGGTCTGTCATGAGCCTGGATAACATCTCCTGCCAGAAGAGCTTCGGCGGCTGGCACAAGCGTTACCGGCATCATTCCAAGGTGCTGGGTTGCGATATGGTGTTCGCTGTGTACCTGCCGCCGCAGGCCGAGCAGGGCGAAAAGCTGCCGGTGCTGTACTGGCTCAGC > KT2440/1806603‑1806860 | catcaCCCACACGATGGGGCTGGAAGACATCAACAAGGCCTTCGACCTGATGCATGAAGGCAAGAGCATCCGTAGCGTGATCCACTTCTGAGGTCTGTCATGAGCCTGGATAACATCTCCTGCCAGAATAGCTTc > 1:29554/1‑135 (MQ=255) tcaCCCACACGATGGGGCTGGAAGACATCAACAAGGCCTTCGACCTGATGCATGAAGGCAAGAGCATCCGTAGCGTGATCCACTTCTGAGGTCTGTCATGAGCCTGGATAACATCTCCTGCCAGAATAGCTTcgg < 3:129065/135‑1 (MQ=255) cccACACGATGGGGCTGGAAGACATCAACAAGGCCTTCGACCTGATGCATGAAGGCAAGAGCATCCGTAGCGTGATCCACTTCTGAGGTCTGTCATGAGCCTGGATAACATCTCCTGCCAGAATAGCTTcggcgg > 4:206773/1‑135 (MQ=255) cacGATGGGGCTGGAAGACATCAACAAGGCCTTCGACCTGATGCATGAAGGCAAGAGCATCCGTAGCGTGATCCACTTCTGAGGTCTGTCATGAGCCTGGATAACATCTCCTGCCAGAATAGCTTCGGCGGCTgg < 1:89480/135‑1 (MQ=255) acGATGGGGCTGGAAGACATCAACAAGGCCTTCGACCTGATGCATGAAGGCAAGAGCATCCGTAGCGTGATCCACTTCTGAGGTCTGTCATGAGCCTGGATAACATCTCCTGCCAGAATAGCTTCGGCGGCTGGc > 7:113179/1‑135 (MQ=255) acGAAGGGGCTGGAAGACATCAACAAGGCCTTCGCCCTGATCCATGAAGGCAAGAGCATCCGTAGCGTCATCCACTTCTGAGGTCTGTCATGAGCCTGGATAACATCTCCTGCCAGAATAGCTTCGGCGGCTCGc > 8:212822/1‑135 (MQ=255) cGATGGGGCTGGAAGACATCAACAAGGCCTTCGACCTGATGCATGAAGGCAAGAGCATCCGTAGCGTGATCCACTTCTGAGGTCTGTCATGAGCCTGGATAACATCTCCTGCCAGAATAGCTTCGGCGGCTGGc > 4:170868/1‑134 (MQ=255) cTGGAAGACATCAACAAGGCCTTCGACCTGATGCATGAAGGCAAGAGCATCCGTAGCGTGATCCACTTCTGAGGTCTGTCATGAGCCTTGATAACATCTCCTGCCAGAATAGCTTcggc < 4:195801/119‑1 (MQ=255) cTGGAAGACATCAACAAGGCCTTCGACCTGATGCATGAAGGCAAGAGCATCCGTAGCGTGATCCACTTCTGAGGTCTGTCATGAGCCTTGATAACATCTCCTGCCAGAATAGCTTcggc > 3:195801/1‑119 (MQ=255) cTGGAAGACATCAACAAGGCCTTCGACCTGATGCATGAAGGCAAGAGCATCCGTAGCGTGATCCACTTCTGAGGTCTGTCATGAGCCTGGATAACATCTCCTGCCAGAATAGCTTCGGCGGCTGGCACAAGCGtt > 6:3076/1‑135 (MQ=255) tGGAAGACATCAACAAGGCCTTCGACCTGATGCATGAAGGCAAGAGCATCCGTAGCGTGATCCACTTCTGAGGTCTGTCATGAGCCTGGATAACATCTCCTGCCAGAATAGCTTCGGCGGCTGGCACAAGCGTTa > 7:30610/1‑135 (MQ=255) aaGACATCAACAAGGCCTTCGACCTGATGCATGAAGGCAAGAGCATCCGTAGCGTGATCCACTTCTGAGGTCTGTCATGAGCCTGGATAACATCTCCTGCCAGAATAGCTTCGGCGGCTGGCACAAGCGTTACCg < 8:30610/135‑1 (MQ=255) aacaaGGCCTTCGACCTGATGCATGAAGGCAAGAGCATCCGTAGCGTGATCCACTTCTGAGGTCTGTCATGAGCCTGGATAACATCTCCTGCCAGAATAGCTTCGGCGGCTGGCACAAGCGTTACCGGCATCAtt < 6:143136/135‑1 (MQ=255) ggCCTTCGACATGATGCATGAATGCAAGAGCCGCCGTAGCGTGCTCGACTTCTGATGTCTGTCCTGAGCCTGGATAAACTCTCCTGCCAGAAGAGCGTCGGCGGCTGGCACAAGCGTTACCGGCATCATTCCacg < 5:95238/135‑3 (MQ=255) gACCTGATGCATGAAGGCAAGAGCATCCGTAGCGTGATCCACTTCTGAGGTCTGTCATGAGCCTGGATAACATCTCCTGCCAGAATAGCTTCGGCGGCTGGCACAAGCGTTACCGGCATCATTCCAAGGTGCt < 3:115772/133‑1 (MQ=255) gACCTGATGCATGAAGGCAAGAGCATCCGTAGCGTGATCCACTTCTGAGGTCTGTCATGAGCCTGGATAACATCTCCTGCCAGAATAGCTTCGGCGGCTGGCACAAGCGTTACCGGCATCATTCCAAGGTGCt < 5:44098/133‑1 (MQ=255) gACCTGATGCATGAAGGCAAGAGCATCCGTAGCGTGATCCACTTCTGAGGTCTGTCATGAGCCTGGATAACATCTCCTGCCAGAATAGCTTCGGCGGCTGGCACAAGCGTTACCGGCATCATTCCAAGGTGCt < 5:3076/133‑1 (MQ=255) gCATGAAGGCAAGAGCATCCGTAGCGTGATCCACTTCTGAGGTCTGTCATGAGCCTGGATAACATCTCCTGCCAGAATAGCTTCGGCGGCTGGCACAAGCGTTACCGGCATCATTCCAAGGTGCTGGGTTGCGat > 3:137887/1‑135 (MQ=255) aGGCAAGAGCATCCGTAGCGTGATCCACTTCTGAGGTCTGTCATGAGCCTGGATAACATCTCCTGCCAGAATAGCTTCGGCGGCTGGCACAAGCGTTACCGGCATCATTCCAAGGTGCTGGGTTGCGATATGgt < 3:170868/134‑1 (MQ=255) aGGCAAGAGCATCCGTAGCGTGATCCACTTCTGAGGTCTGTCATGAGCCTGGATAACATCTCCTGCCAGAATAGCTTCGGCGGCTGGCACAAGCGTTACCGGCATCATTCCAAGGTGCTGGGTTGCGATATGgt < 2:157882/134‑1 (MQ=255) aGGCAAGAGCATCCGTAGCGTGATCCACTTCTGAGGTCTGTCATGAGCCTGGATAACATCTCCTGCCAGAATAGCTTCGGCGGCTGGCACAAGCGTTACCGGCATCATTCCAAGGTGCTGGGTTGCGATAAGgtg > 8:173004/1‑135 (MQ=255) aGGCAAGAGCATCCGTAGCGTGATCCACTTCTGAGGTCTGTCATGAGCCTGGATAACATCTCCTGCCAGAATAGCATCGGCGGCTGGCACAAGCGTTACCGGCATCATTCCAAGGTGCTGGGTTGCGATATGgt < 8:187969/134‑1 (MQ=255) ggCAAGAGCATCCGTAGCGTGATCCACTTCTGAGGTCTGTCATGAGCCTGGATAACATCTCCTGCCAGAATAGCTTCGGCGGCTGGCACAAGCGTTACCGGCATCATTCCAAGGTGCTGGGTTGCGATATGgtgt < 7:35363/135‑1 (MQ=255) cATCCGTAGCGTGATCCACTTCTGAGGTCTGTCATGAGCCTGGATAACATCTCCTGCCAGAATAGCTTCGGCGGCTGGCACAAGCGTTACCGGCATCATTCCAAGGTGCTGGGTTGCGATATGGTGTTCGCtgt > 5:75339/1‑134 (MQ=255) cACTTCTGAGGTCTGTCATGAGCCTGGATAACATCTCCTGCCAGAATAGCTTCGGCGGCTGGCACAAGCGTTCCAGGCATCATTCCAAGGTGCTGGGTTGCGATATGGTCTTCGCTGTGTACCTGCCGCCGCAgg > 1:200990/1‑135 (MQ=255) cACTTCTGAGGTCTGTCATGAGCCTGGATAACATCTCCTGCCAGAATAGCTTCGGCGGCTGGCACAAGCGTTACCGGCATCATTCCAAGGTGCTGGGTTGCGATATGGTGTTCGCTGTGTACCTGCCGCCGCAgg > 1:190516/1‑135 (MQ=255) aCTTCTGAGGTCTGTCATGAGCCTGGATAACATCTCCTGCCAGAATAGCTTCGGCGGCTGGCACAAGCGTTACCGGCATCATTCCAAGGTGCTGGGTTGCGATATGGTGTTCGCTGTGTACCTGCCGCCGCAGGc > 4:213828/1‑135 (MQ=255) tCTGTCATGAGCCTGGATAACATCTCCTGCCAGAATAGCTTCGGCGGCTGGCACAAGCGTTACCg > 8:111834/1‑65 (MQ=255) tCTGTCATGAGCCTGGATAACATCTCCTGCCAGAATAGCTTCGGCGGCTGGCACAAGCGTTACCg < 7:111834/65‑1 (MQ=255) cATGAGCCTGGATAACATCTCCTGCCAGAATAGCTTCGGCGGCTGGCACAAGCGTTACCGGCATCATTCCAAGGTGCTGGGTTGCGATATGgt < 5:113856/93‑1 (MQ=255) cATGAGCCTGGATAACATCTCCTGCCAGAATAGCTTCGGCGGCTGGCACAAGCGTTACCGGCATCATTCCAAGGTGCTGGGTTGCGATATGgt > 6:113856/1‑93 (MQ=255) cATGAGCCTGGATAACATCTCCTGCCAGAATAGCTTCGGCGGCTGGCACAAGCGTTACCGGCATCATTCCAAGGTGCTGGGTTGCGATATGGTGTTCGCTGTGTACCTGCCGCCGCAGGCCGAGCAGGGCGaaaa > 8:92259/1‑135 (MQ=255) cATGAGCCTGGATAACATCTCCTGCCAGAATAGCTTCGGCGGCTGGCACAAGCGTTACCGGCATCATTCCAAGGTGCTGGGTTGCGATATGGTGTTCGCTGTGTACCTGCCGCCGCAGGCCGAGCAGGGCGaaaa > 7:126888/1‑135 (MQ=255) cATGAGCCTGGATAACATCTCCTGCCAGAATAGCTTCGGCGGCTGGCACAAGCGTTACCGGCATCATTCCAAGGTGCTGGGTTGCGATATGGTGTTCGCTGTGTACCTGCCGCCGCAGGCCGAGCAGGGCGaaaa > 8:147619/1‑135 (MQ=255) tGAGCCTGGATAACATCTCCTGCCAGAATAGCTTCGGCGGCTGGCACAAGCGTTACCGGCATCATTCCAAGGTGCTGGGTTGCGATATGGTGTTCGCTGTGTACCTGCCGCCGCAGGCCGAGCAGGGCGAAAAGc < 7:92259/135‑1 (MQ=255) tGAGCCTGGATAACATCTCCTGCCAGAATAGCTTCGGCGGCTGGCACAAGCGTTACCGGCATCATTCCAAGGTGCTGGGTTGCGATATGGTGTTCGCTGTGTACCTGCCGCCGCAGGCCGAGCAGGGCGAAAAGc > 1:86788/1‑135 (MQ=255) cTGGATAACATCTCCTGCCAGAATAGCTTCGGCGGCTGGCACAAGCGTTACCGGCATCATTCCAAGGTGCTGGGTTGCGATATGGTGTTCGCTGTGTACCTGCCGCCGCAGGCCGAGCAGGGCGAAAAGCTGCCg > 3:203449/1‑135 (MQ=255) cTGGATAACATCTCCTGCCAGAATAGCTTCGGCGGCTGGCACAAGCGTTACCGGCATCATTCCAAGGTGCTGGGTTGCGATATGGTGTTCGCTGTGTACCTGCCGCCGCAGGCCGAGCAGGGCGAAAAGCTGCCg > 3:176315/1‑135 (MQ=255) cTGGATAACATCTCCTGCCAGAATAGCTTCGGCGGCTGGCACAAGCGTTACCGGCATCATTCCAAGGTGCTGGGTTGCGATATGGTGTTCGCTGTGTACCTGCCGCCGCAGGCCGAGCAGGGCGAAAAGCTGCCg < 3:107531/135‑1 (MQ=255) cTGGATAACATCTCCTGCCAGAATAGCTTCGGCGGCTGGCACAAGCGTTACCGGCATCATTCCAAGGTGCTGGGTTGCGATATGGTGTTCGCTGTGTACCTGCCGCCGCAGGCCGAGCAGGGCGAAAAGCTGCCg < 2:29554/135‑1 (MQ=255) cTGGATAACATCTCCTGCAAGAATAGCTTCGGCGGCTGGCACAAGCGTTACCGGCATCATTCCAAGGTGCTGGGTTGCGATATGGTGTTCGCTGTGTACCTGCCGCCGCAGGCCGAGCAGGGCGAAAAGCTGCCg > 7:183119/1‑135 (MQ=255) tAACATCTCCTGCCAGAATAGCTTCGGCGGCTGGCACAAGCGTTACCGGCATCAtt < 7:23792/56‑1 (MQ=255) tAACATCTCCTGCCAGAATAGCTTCGGCGGCTGGCACAAGCGTTACCGGCATCAtt > 8:23792/1‑56 (MQ=255) tAACATCTCCTGCCAGAATAGCTTCGGCGGCTGGCACAAGCGTTACCGGCATCATTCCAAGGTGCTGGGTTGCGATATGGTGTTCGCTGTGTACCTGCCGCCGCAGGCCGAGCAGGGCGAAAAGCTGCCGGTGCt > 6:11390/1‑135 (MQ=255) ctcCTGCCAGAATAGCTTCGGCGGCTGGCACAAGCGTTACCGGCATCATTCCAAGGTGCTGGGTTGCGATATGGTGTTCGCTGTGTACCTGCCGCCGCAGGCCGAGCAGGGCGAAAAGCTGCCGGTGCTGTACTg > 1:143458/1‑135 (MQ=255) tGCCAGAATAGCTTCGGCGGCTGGCACAAGCGTTACCGGCATCATTCCAAGGTGCTGGGTTGCGATATGGTGTTCGCTGTGTACCTGCCGCCGCAGGCCGAGCAGGGCGAAAAGCTGCCGGTGCTGTACTGGc < 1:116108/133‑1 (MQ=255) tGCCAGAATAGCTTCGGCGGCTGGCACAAGCGTTACCGGCATCATTCCAAGGTGCTGGGTTGCGATATGGTGTTCGCTGTGTACCTGCCGCCGCAGGCCGAGCAGGGCGAAAAGCTGCCGGTGCTGTACTGGc < 8:183119/133‑1 (MQ=255) gCCAGAATAGCTTCGGCGGCTGGCACAAGCGTTACCGGCATCATTCCAAGGTGCTGGGTTGCGATATGGTGTTCGCTGTGTACCTGCCGCCGCAGGCCGAGCAGGGCGAAAAGCTGCCGGTGCTGTACTGGCTCa > 7:64199/1‑135 (MQ=255) cAGAATAGCTTCGGCGGCTGGCACAAGCGTTACCGGCATCATTCCAAGGTGCTGGGTTGCGATATGGTGTTCGCTGTGTACCTGCCGCCGCAGGCCGAGCAGGGCGAAAAGCTGCCGGTGCTGTACTGGCTCAGc < 6:75339/135‑1 (MQ=255) agaataGCTTCGGCGGCTGGCACAAGCGTTACCGGCATCATTCCAAGGTGCTGGGTTGCGATATGGTGTTCGCTGTGTACCTGCCGCCGCAGGCCGAGCAGGGCGAAAAGCTGCCg < 3:193883/116‑1 (MQ=255) agaataGCTTCGGCGGCTGGCACAAGCGTTACCGGCATCATTCCAAGGTGCTGGGTTGCGATATGGTGTTCGCTGTGTACCTGCCGCCGCAGGCCGAGCAGGGCGAAAAGCTGCCg > 4:193883/1‑116 (MQ=255) | CATCACCCACACGATGGGGCTGGAAGACATCAACAAGGCCTTCGACCTGATGCATGAAGGCAAGAGCATCCGTAGCGTGATCCACTTCTGAGGTCTGTCATGAGCCTGGATAACATCTCCTGCCAGAAGAGCTTCGGCGGCTGGCACAAGCGTTACCGGCATCATTCCAAGGTGCTGGGTTGCGATATGGTGTTCGCTGTGTACCTGCCGCCGCAGGCCGAGCAGGGCGAAAAGCTGCCGGTGCTGTACTGGCTCAGC > KT2440/1806603‑1806860 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |