mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 136 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 580,431 | 0 | T | A | 76.9% | 9.9 / 12.4 | 26 | I125I (ATT→ATA) ‡ | nohB | bacteriophage DNA packaging protein |
| * | NC_000913 | 1,634,019 | 0 | T | C | 65.8% | 37.8 / 37.4 | 41 | I125V (ATT→GTT) ‡ | nohA | NohA |
| * | NC_000913 | 580,429 | 0 | A | G | 64.5% | 28.4 / 27.5 | 31 | I125V (ATT→GTT) ‡ | nohB | bacteriophage DNA packaging protein |
| * | NC_000913 | 580,425 | 0 | T | A | 62.2% | 44.1 / 48.2 | 45 | G123G (GGT→GGA) | nohB | bacteriophage DNA packaging protein |
| * | NC_000913 | 3,192,873 | 0 | T | C | 59.7% | 298.4 / inf | 457 | intergenic (+332/+88) | b3051/b3052 | putative membrane protein/putative kinase |
| * | NC_000913 | 3,192,891 | 0 | C | T | 58.7% | 351.2 / inf | 443 | intergenic (+350/+70) | b3051/b3052 | putative membrane protein/putative kinase |
| * | NC_000913 | 3,192,907 | 0 | A | T | 56.0% | 234.7 / inf | 440 | intergenic (+366/+54) | b3051/b3052 | putative membrane protein/putative kinase |
| * | NC_000913 | 3,192,905 | 0 | C | A | 55.6% | 26.0 / inf | 438 | intergenic (+364/+56) | b3051/b3052 | putative membrane protein/putative kinase |
| * | NC_000913 | 1,634,023 | 0 | A | T | 55.1% | 63.5 / 72.7 | 49 | G123G (GGT→GGA) | nohA | NohA |
| * | NC_000913 | 580,422 | 0 | A | C | 54.5% | 73.9 / 76.5 | 55 | A122A (GCA→GCC) | nohB | bacteriophage DNA packaging protein |
| * | NC_000913 | 580,419 | 0 | C | G | 54.2% | 98.1 / 112.1 | 72 | I121M (ATC→ATG) | nohB | bacteriophage DNA packaging protein |
| * | NC_000913 | 580,509 | 0 | G | C | 53.5% | 144.4 / 166.2 | 101 | L151L (CTG→CTC) | nohB | bacteriophage DNA packaging protein |
| * | NC_000913 | 580,512 | 0 | A | G | 52.4% | 134.8 / 149.4 | 103 | K152K (AAA→AAG) | nohB | bacteriophage DNA packaging protein |
| * | NC_000913 | 1,634,026 | 0 | T | G | 50.0% | 85.4 / 104.9 | 54 | A122A (GCA→GCC) | nohA | NohA |
| * | NC_000913 | 1,949,411 | 0 | A | C | 49.7% | 143.8 / inf | 499 | N197H (AAC→CAC) | yecD | hypothetical protein |
| * | NC_000913 | 1,949,410 | 0 | C | T | 49.4% | 27.2 / inf | 501 | L196L (CTC→CTT) | yecD | hypothetical protein |
| * | NC_000913 | 3,192,619 | 0 | A | C | 48.5% | 151.4 / inf | 521 | intergenic (+78/+342) | b3051/b3052 | putative membrane protein/putative kinase |
| * | NC_000913 | 1,949,356 | 0 | T | C | 48.2% | 76.4 / inf | 487 | S178S (AGT→AGC) | yecD | hypothetical protein |
| * | NC_000913 | 1,949,436 | 0 | A | G | 48.1% | 88.2 / inf | 423 | L6L (CTA→CTG) | yecE | hypothetical protein |
| * | NC_000913 | 580,513 | 0 | C | A | 47.8% | 202.1 / 168.7 | 111 | R153R (CGG→AGG) | nohB | bacteriophage DNA packaging protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207013 = | 177 (0.690) | 90 (0.420) | 66/152 | 4.4 | 39.3% | coding (290/630 nt) | ycfK | hypothetical protein |
| ? | NC_000913 | 1208842 = | 132 (0.620) | coding (40/540 nt) | b1157 | putative tail fiber protein | |||||
| * | ? | NC_000913 | = 1207028 | 160 (0.620) | 88 (0.410) | 65/152 | 4.6 | 40.8% | coding (305/630 nt) | ycfK | hypothetical protein |
| ? | NC_000913 | = 1208825 | 124 (0.580) | coding (57/540 nt) | b1157 | putative tail fiber protein | |||||
| * | ? | NC_000913 | = 4008398 | 74 (0.290) | 49 (0.200) +AAGA |
21/172 | 19.0 | 40.6% | coding (481/516 nt) | b4555 | hypothetical protein |
| ? | NC_000913 | 4008399 = | 74 (0.290) | coding (482/516 nt) | b4555 | hypothetical protein | |||||
| * | ? | NC_000913 | = 1208841 | 193 (0.750) | 15 (0.070) | 10/154 | 23.3 | 7.4% | coding (41/540 nt) | b1157 | putative tail fiber protein |
| ? | NC_000913 | 2469917 = | 212 (0.980) | coding (166/519 nt) | yfdL | putative RNA polymerase beta | |||||
| * | ? | NC_000913 | = 2875930 | 0 (0.000) | 4 (0.020) +G |
4/182 | 30.5 | 100% | intergenic (+289/+662) | iap/ygbF | Iap/hypothetical protein |
| ? | NC_000913 | 2875993 = | 0 (0.000) | intergenic (+352/+599) | iap/ygbF | Iap/hypothetical protein | |||||