| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2083416 = | 3 (0.070) | 52 (1.270) | 47/290 | 0.0 | 94.5% | intergenic (‑222/‑61) | yefM/hisL | antitoxin of the YoeB‑YefM toxin‑antitoxin system/his operon leader peptide |
| ? | CP009273 | = 2096424 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
TCTGAATGTCTTCCAGCACACATCGCCTGAAAGACTAGTCAGGATGATGGTGATGATGGTGGTGTTTAAATTGAACGCGTGTCATAAAAGTCTCTGTGAATGTTTATTCAACTGATGTCTTTTAACCTAAACCACTTTCACGTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/2083561‑2083416‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCG < CP009273/2096424‑2096277 TCTGAATGTCTTCCAGCACACATCGCCTGAAAGACTAGTCAGGATGATGGTGATGATGGTGGTGTTTAAATTGAACGCGTGTCATAAAAGTCTCTGTGAATGTTTATTCAACTGATGTCTTTTAACCTAAACCACTTTCACGTTAGGGA > 2:675822/1‑149 TGAATGTCTTCCAGCACACATCGCCTGAAAGACTAGTCAGGATGATGGTGATGATGGTGGTGTTTAAATTGAACGCGTGTCATAAAAGTCTCTGTGAATGTTTATTCAACTGATGTCTTTTAACCTAAACCACTTTCACGTTAGGGAAG > 2:555352/1‑149 TGTCTTCCAGCACACATCGTCTGAAAGACTAGTCAGGATGATGGTGATGATGGTGGTGTTTAAATTGAACGCGTGTCATAAAAGTCTCTGTGAATGTTTATTCAACTGATGTCTTTTAACCTAAACCACTTTCACGTTAGGGAAGGTGC < 2:658736/149‑1 TCCAGCACACCTCGCCTGAAAGACTAGTCAGGATGATGGTGATGATGGTGGTGTTTAAATTGAACGCGTGTCATAAAAGTCTCTGTGAATGTTTATTCAACTGATGTCTTTTAACCTAAACCACTTTCACGTTAGGGAAGGTG < 1:71422/143‑1 TCCAGCACACATCGCCTGAAAGACTAGTCAGGATGATGGTGATGATGGTGGTGTTTAAATTGAACGCGTGTCATAAAAGTCTCTGTGAATGTTTATTCAACTGATGTCTTTTAACCTAAACCACTTTCACGTTAGGGAAGGTG < 1:625777/143‑1 CCAGCACACATCGCCTGAAAGACTAGTCAGGATGATGGTGATGATGGTGGTGTTTAAATTGAACGCGTGTCATAAAAGTCTCTGTGAATGTTTATTCAACTGATGTCTTTTAACCTAAACCACTTTCACGTTAGGGAAGGTGC < 1:559900/143‑1 CACACATCGCCTGAAAGACTAGTCAGGATGCTGGTGATGATGGTGGTGTTTAAATTGAACGCGTGTCATAAAAGTCTCTGTGAATGTTTATTCAACTGATGTCTTTTAACCTAAACCACTTTCACGTTAGGGAAGGTGCGAACCAGTCC > 2:365612/1‑149 CACATCGCCTGGAAGGCTAGTCAGGATGATGGTGATGATGGTTGTGGTTAAATTGAACGCGTTTCATAAAAGGCTCTGTGAATGTTTATTCAACTGATGTCTTTTAACCTAAACCACTTTCACGTTATGGAAGGTGCGAACAA < 1:583832/143‑1 ACATCGCCTGAAAGACTAGTCAGGATGATGGTGATGATGGTGGTGTTTAAATTGAACGCGTGTCATCAAAGTCTCTGTGAATGTTTATTCAACTGATGTCTTTTAACCTAAACCACTTTCACGTTAGGGAAGGTGCGAACAAGTCCCTG < 2:286421/149‑1 ACATCGCCTGAAAGACTAGTCAGGATGATGGTGATGATGGTGGTGTTTAAATTGAACGCGTGTCATAAAAGTCTCTGTGAATGTTTATTCAACTGATGTCTTTTAACCTAAACCACTTTCACGTTAGGGAAGGTGCGAACAAGTCCCTG < 2:415350/149‑1 CTGAAAGACTAGTCAGGATGATGGTGATGATGGTGGTGTTTAAATTGAACGCGTGTCATAAAAGTCTCTGTGAATGTTTATTCAACTGATGTCTTTGAACCTAAACCACTTTCACGTTAGGGAAGATGCGAACAAGTCCCTGATATGAG > 2:488019/1‑149 AGACTAGTCAGGATGATGGTGATGATGGTGGTGTTTAAATTGAACGCGTGTCCTAAAAGTCCCTGTGAATGTTTATTCAACTGATGTCTTTTAACCTAAACCACTTTCACGTTAGGGAAGGTGCGAACAAGTCCCTGATATGA > 1:305829/1‑143 GTCAGGATGATGGTGATGATGGTGGTGTTTAAATTGAACGCGTGTCATAAAAGTCTCTGTGAATGTTTATTCAACTGATGTCTTTTAACCTAAACCACTTTCACGTTAGGGAGGGTGCGAACAAGTCCCTGCTATGAGATCAT > 1:169469/1‑143 AGGATGATGGTGATGATGGTGGTGTTTAAATTGAACGCGTGTCATAAAAGTCTCTGTGAATGTTTATTCAACTGATGTCTTTTAACCTAAACCACTTTCACGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCAT > 2:674628/1‑149 GGATGATGGTGATGATGGTGGTGTTTAAATTGAACGCGTGTCATAAAAGTCTCTGTGAATGTTTATTCAACTGATGTCTTTTAACCTAAACCACTTTCACGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATC < 2:288144/149‑1 ATGATGGTGGTGTTTTAATTGAACGCGTGTCATAAAAGTCTCTGTGAATGTTTATTCAACTGATGTCTTTTAACCTTAACCACTTTCACGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAG < 1:148858/143‑1 TGGTGGTGTTTAAATTGAACGCGTGTCATAAAAGTCTCTGTGAATGTTTATTCAACTGATGTCTTTTAACCTAAACCACTTTCACGTTAGGGAAGGTACGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATATAACA > 2:655565/1‑149 GTGGTGTTTAAATTGAACGCGTGTCATAAAAGTCTCTGTGAATGTTTATTCAACTGATGTATTTTAACCTAAACCACTTTCACGTTAGGGAGGGTGCGAACAAGTCCATGTTCTGAGATCAGGTTTGTCATCTGGGGCCATAGTACAGG > 2:584312/1‑149 AAATTGAACGCGTGTCATAAAAGTCTCTGTGAATGTTTATTCAACTGATGTCTTTTAACCTAAACCACTTTCACGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCAT > 2:482185/1‑149 ATTGAACGCGTGTCATAAAAGGCTCTGTGAATGTTTATTCAACTGATGTCTTTTAACCTAAACCACTTTCACGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGA < 2:603672/149‑1 AACGCGTGTCATAAAAGTCTCTGTGAATGTTTATTCAACTGATGTCTTTTAACCTAAACCACTTTCACGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCct > 1:97600/1‑141 CGCGGGTCATAAAAGTCTCTGTGAATGTTTATTCAACTGATGTCTTTTAACCTAAACCACTTTCACGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGA < 1:326390/143‑1 CGTGTCATAAAAGTCTCTGTGAATGTTTATTCAACTGATGTCTTTTAACCTAAACCACTTTCACGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAat > 1:203778/1‑141 TGTCATAAAAGTCTCTGTGAATGTTTATTCAACTGATGTCTTTTAACCTAAACCACTTTCACGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTGCATCCTGAGTCA > 1:511706/1‑143 GTCATAACCGACCCTGTGAATGTTTATTCAACTGATGTCTTTTAACCTAAACCACTTTCACGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCAT < 1:580360/143‑1 TAAAAGTCTCTGTGAATGTTTATTCAACTGATGTCTTTTAACCTAAACCACTTTCACGGTAGGGAAGGTGCGAACCAGTCCCTGATATGGGATCATGTTTGTCATCTGGAGCCATAGAACAGGGGTCGTCATGAGTCGTCAACTTACCT > 2:116368/1‑149 CTGTGAATGTTTATTCAACTGATGTCTTTTAACCTAAACCACTTTCACGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACA > 2:162915/1‑149 TGTGAATTTTTATTCAACTGATGTCTTTTAACCTAAACCACTTGCACGTTAGGGAAGGTGCGAACACGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGC < 1:406742/143‑1 TGTGAATGTTTATTCAACTGATGTCTTTTAACCTAAACCACTTTCACGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAG > 2:218543/1‑149 AATGTTTATTCAACTGATGTCTTTTAACCTAAACCACTTTCACGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGGGCCATAGAACAGGGTTCATCATGAGTCATGAACTTACCTTCGCCGAC > 1:25858/1‑143 AATGTTTATTCAACTGATGTCTTTTAACCTAAACCACTTTCACGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAA < 2:532425/149‑1 GTTTATTCAACTGATGTCTTTTAACCTAAACCACTTTCACGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGAGCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTGATCAACTTACCTTCGCCGACAGTGAATTa > 2:530329/1‑148 TTATTCAACTGATGTCTTTTAACCTAAACCACTTTCACGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGA < 1:441564/143‑1 TTCAACTGATGTCTTTTAACCTAAACCACTTTCACGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAG > 2:248266/1‑149 AACTGATGTCTTTTAACCTAAACCACTTTCACG‑TAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGC > 1:397026/1‑143 ACTGATGTCTTTTAACCTAAACCACTTTCACGTTAGGGAAGGTGCGTACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGTGCCATAGCACAGGGTTCATCATGAGTCATCAACTTACATTCAGCGACACTGAATTCAGC > 1:478438/1‑143 CTGATGTCTTTTAACCTAAACCACTTTCACGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCA < 1:180124/143‑1 TGATGTCTTTTAACCTAAACCACTTTCACGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCAGGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGCGTCATCAACTTCCCTTCGCCGACAGCGAATTCAGCAGTAAGag > 2:433315/1‑147 ATGTCTTTTAACCTAAACCACTTTCACGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTA > 1:524521/1‑143 TCTTTTAACCTAAACCACTTTCACGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCGGTAAGC > 1:328172/1‑143 TTTTAACCTAAACCACTTTCACGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTACGCGC > 1:181592/1‑143 TTTTAACCTAAACCACTTTCACGTTAGGGAAGATGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCCGCAGTAAGCGC > 1:183863/1‑143 ACCACTTTCACGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCATCGCCGACAGTGAATTCAGCAGTGAGCCGCGCAAGACCAG > 1:335121/1‑143 CCACTTTCACGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAG > 2:521757/1‑149 CACTTTCACGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAA > 1:612166/1‑143 ACTTTCACGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAA < 1:362325/143‑1 ACTTTCACGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAAAAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGGCAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAc > 1:35546/1‑142 TTTCACGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTCCCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTT < 2:485903/149‑1 TCACGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCCACTTACCTTCGCCGACAGAGAATTCAGCAGTAAGCGCCAAACAACCAGAAAAAAGATTATC > 2:4976/1‑149 TTAGTGAAGGTGCGAACAAGTCCCTGATATGAGATCATGGTTGTCATCTGGAGCCGTTGAGCAGGGTTCATCATGATGCATGAACGTACCGTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTT < 1:165690/143‑1 AGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCT < 1:283134/143‑1 GGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCG > 2:41057/1‑149 TCTGAATGTCTTCCAGCACACATCGCCTGAAAGACTAGTCAGGATGATGGTGATGATGGTGGTGTTTAAATTGAACGCGTGTCATAAAAGTCTCTGTGAATGTTTATTCAACTGATGTCTTTTAACCTAAACCACTTTCACGTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/2083561‑2083416‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCG < CP009273/2096424‑2096277 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |