New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 226934612 (0.590)12 (0.590) 12/276 NT 50.0% coding (595/1026 nt) yejE microcin C transporter YejABEF, permease subunit; ABC family
?CP009273 3576788 = NA (NA)intergenic (+10/‑55) yrhA/insA pseudogene, interrupted by IS1E/IS1 repressor TnpA

GCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATTTCGACTACATTCGTGCGGCACAGGCGCTTGGCGTCAGCGATCGCAGTA  >  CP009273/2269198‑2269493
                                                                                                                                                    |                                                                                                                                                   
ggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCCAGcgtcg                                                                                                                                                     >  2:73613‑M1/141‑149 (MQ=255)
  cataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCCAGCGTCGTa                                                                                                                                                   >  1:212988‑M1/139‑149 (MQ=255)
      tctctGTTCCAGCGTGATGGGCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGGCAACGCTTTATAGAAGTATGGTGGGGGATGCCGGCGCTGTTTTTGATTGTTTTACTTTCCAGCGACGTACAGc                                                                                                                                               >  1:216421/1‑149 (MQ=255)
         ctGTTCCAGCGTGATGGGCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGggtgatgct                                                                                                                                            <  1:209577‑M1/149‑10 (MQ=255)
              ccAGCGTGATGGGCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGggtgatgctgccaa                                                                                                                                       <  1:48910‑M1/149‑15 (MQ=255)
                aGCGTGATGGGCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGggtgatgctgccaact                                                                                                                                     >  2:303484‑M1/1‑133 (MQ=255)
                  cGTGATCGCCCTGCTGGCGGCGCCGCCACAAGGCTCCTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGCATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCtggt                                                                                                                                   <  1:249949/149‑1 (MQ=255)
                     gATGGGCGTGCTCGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGgc                                                                                                                                <  1:292345/149‑1 (MQ=255)
                          gCGTGCTGGCGGGGGCGGTACAAGGTTATTACGGCGGTAAAGTCGATCTCTGGGTACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCTGCTTCTTACAGCCTAACTTCTTGTGGctgctg                                                                                                                           <  1:345536/149‑1 (MQ=255)
                            gTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGAATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTCACTTCCGGCGGTCGCTGGc                                                                                                                         >  1:358038/1‑149 (MQ=255)
                             gcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCa                                                                                                                        <  2:347783‑M1/38‑1 (MQ=255)
                                  gggggggcgCTAGAAGGCTAGTACGGCGGTACAGTCGATCTCTGGGAACAACTCTTTATTGAAGTATGGTCGGGGATGTCCCCGCTGTTATTGATTCGTTTACTTTCCAGCGTCGggtgatgctgccaacttactgatttagtgtatga                                                                                                                   <  1:197896‑M1/147‑35 (MQ=255)
                                  gctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTAc                                                                                                                   <  2:297137‑M1/43‑1 (MQ=255)
                                    gggggCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGggtgatgctgccaacttactgatttagtgtatgatg                                                                                                                 <  2:222378‑M1/149‑37 (MQ=255)
                                       ggCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCGAGCGGCGTACAGCCTAACTTCTGGTGGGTGCTGGCACTTACTGTcg                                                                                                              >  1:218062/1‑148 (MQ=255)
                                       ggCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGggtgatgctgccaacttactgatttagtgtatgatggtg                                                                                                              >  2:148052‑M1/1‑110 (MQ=255)
                                                 gctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggaggcattaccCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATGACTGTCTTGTTTGGCTg                                                                                                    <  2:225249‑M1/58‑1 (MQ=255)
                                                        ttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGt                                                                                             >  1:9124‑M1/85‑149 (MQ=255)
                                                         cggcggTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGggtgatgctgccaaattactgatttagtgtatgatggtgtttttgaggtgctccagt                                                                                            >  1:285730‑M1/1‑92 (MQ=255)
                                                                    tCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgttt                                                                                 <  1:38189‑M1/149‑69 (MQ=255)
                                                                       gagctgcatgacaaagtcatcgggcattatctgaacataaaacactatccataagatggagtcattaccCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCGATTCCTGTCTGGTTTGGCTGGGTGGTTCTGGTCGCCgtggtg                                                                              <  1:281346‑M1/80‑1 (MQ=255)
                                                                        tctcTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctat                                                                             <  2:280562‑M1/149‑73 (MQ=255)
                                                                          ctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCCAGCGTCGTACAGCCTAACTTCTGGCGGCCTTCGGTAATGACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTgcgg                                                                           <  2:277740‑M1/83‑1 (MQ=255)
                                                                                     cGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGttttt                                                                >  2:60866/1‑149 (MQ=255)
                                                                                       cTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTAc                                                              <  2:310860/149‑1 (MQ=255)
                                                                                              gAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagatgtccctcctgttcagct                                                       >  1:289149‑M1/1‑55 (MQ=255)
                                                                                              gAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCg                                                       <  2:148351/149‑1 (MQ=255)
                                                                                                    tctgaacataaaacactatcaataagttggagtcattaccCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAAttt                                                 >  2:302974‑M1/41‑149 (MQ=255)
                                                                                                         ggggATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCCATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTGCTCGTAATTTCGGCt                                            >  2:143451/1‑149 (MQ=255)
                                                                                                         ggggATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATTTCGACt                                            >  1:209428/1‑149 (MQ=255)
                                                                                                                      cTGTTTTTGATTATTTTACTTTCCAGCGTCGggtgatgctgccaacttactgatttagggtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggc                               <  1:148052‑M1/149‑119 (MQ=255)
                                                                                                                               attattTTACTTTCCAGCGTCGTACAGCCTAACGTCTGGTGGCTGCTAGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATTTCGACTACATTCGTGCGGCCCAGGCGCt                      >  2:230809/1‑149 (MQ=255)
                                                                                                                                   ttttACTTTCCAGCGTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccg                  <  2:33111‑M1/149‑132 (MQ=255)
                                                                                                                                           cCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATTTCGACTACATTCGTGCGGCACAGGCGCTTGGCGTCAGCGa          >  2:93673‑M1/2‑149 (MQ=255)
                                                                                                                                                   cGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcgccgcgatct  >  1:186525‑M1/1‑2 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
GCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATTTCGACTACATTCGTGCGGCACAGGCGCTTGGCGTCAGCGATCGCAGTA  >  CP009273/2269198‑2269493

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.