Predicted mutation
evidence seq id position mutation annotation gene description
RA CP009273 2,420,394 G→T intergenic (‑127/+94) hisJ ← / ← argT histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,420,3940GT98.8% 277.9 / NA 84intergenic (‑127/+94)hisJ/argThistidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base T (42/41);  minor base C (1/0);  total (43/41)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

ATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGT  >  CP009273/2420249‑2420534
                                                                                                                                                 |                                                                                                                                            
aTAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCtt                                                                                                                                           >  2:495957/1‑149 (MQ=255)
  aGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAGTTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTaa                                                                                                                                         <  2:1023808/149‑1 (MQ=255)
  aGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTaa                                                                                                                                         <  1:1412301/149‑1 (MQ=255)
    cACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGt                                                                                                                                       >  2:931966/1‑149 (MQ=255)
    cACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGt                                                                                                                                       <  1:862505/149‑1 (MQ=255)
     aCCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTa                                                                                                                                      >  2:360402/1‑149 (MQ=255)
      ccAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTAt                                                                                                                                     >  1:428596/1‑149 (MQ=255)
        aGTTTTGTCGCAAGGCCCTCATCTGACTGTCTGTTTATCGGGAATATTTACAGGTTGGTTACACGTATCGTGCCATAAAATTGACCATTAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGc                                                                                                                                   <  2:40716/149‑1 (MQ=255)
          ttttttCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCAt                                                                                                                                 <  1:358762/149‑1 (MQ=255)
            ttttCATAATGCCCTCAAATGACAGTCTCTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAACTTTGACCATCCAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCAttt                                                                                                                               <  1:658606/149‑1 (MQ=255)
             tttCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTc                                                                                                                              >  1:7369/1‑149 (MQ=255)
               tCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCaa                                                                                                                            <  1:495957/149‑1 (MQ=255)
                cATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAAt                                                                                                                           >  1:1236021/1‑149 (MQ=255)
                cATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAAt                                                                                                                           >  1:842842/1‑149 (MQ=255)
                 ataataTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGCTTGTTACACTTATCGTTCAATAAAATTGACCATCAAGGCAAGATATCGCGCCCCGATACACGTATTATTTTTCATTAAAAATCCTTACGTATCCATTACaact                                                                                                                          >  2:628722/1‑147 (MQ=255)
                     tGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTACAAATTCTTAAGTATGCATTTCAATGcacc                                                                                                                      >  1:1336473/1‑149 (MQ=255)
                       tCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTaa                                                                                                                                         <  1:777096/128‑1 (MQ=255)
                       tCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTaa                                                                                                                                         >  2:777096/1‑128 (MQ=255)
                              cTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTg                                                                                                             <  1:931966/149‑1 (MQ=255)
                               tGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGAACATCAAGGCAAGATATCCCGCCCCGTTAGACGTGTTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGc                                                                                                            >  2:598745/1‑149 (MQ=255)
                                 ataGTTTTTTTATAGGTAATATTTACATGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGcaa                                                                                                          <  1:684640/147‑1 (MQ=255)
                                     tCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCCTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACaaa                                                                                                      >  2:778862/1‑149 (MQ=255)
                                         tttATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAATATACATTACACTGCACCACGATAGAGCAACAAACCta                                                                                                  >  1:417778/1‑148 (MQ=255)
                                             taGTGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGt                                                                                              <  1:468188/149‑1 (MQ=255)
                                                ggAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAg                                                                                                               >  1:246599/1‑129 (MQ=255)
                                                ggAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAg                                                                                                               <  2:246599/129‑1 (MQ=255)
                                                ggAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCa                                                                                           >  2:387252/1‑149 (MQ=255)
                                                ggAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCa                                                                                           >  2:1163236/1‑149 (MQ=255)
                                                ggAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCa                                                                                           >  2:648284/1‑149 (MQ=255)
                                                 gAATATTTACAGGTTTGTTACACTTATCGTGCAATACAATTGACCATCAAGACAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCAc                                                                                          >  2:853231/1‑149 (MQ=255)
                                                   atagTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCa                                                                                        <  2:1020043/149‑1 (MQ=255)
                                                       ttACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCatgat                                                                                    <  2:927814/149‑1 (MQ=255)
                                                        tACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTTGCGTTCACCatgatg                                                                                   >  2:101896/1‑149 (MQ=255)
                                                           aGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTTTTTTTTTTTTCTTAAGTATGCATTTCAATGCAACACGATAGTGCAAGAAACCTCGCGTGCActctcatcatc                                                                                >  2:260864/1‑139 (MQ=255)
                                                           aGGTTTGTTACACTTATCGTGCCATAAAATTGACCAGCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATc                                                                                >  2:454791/1‑149 (MQ=255)
                                                            ggTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCa                                                                               <  1:453082/149‑1 (MQ=255)
                                                               ttGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTc                                                                            <  2:195639/149‑1 (MQ=255)
                                                               ttGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTc                                                                            <  2:195613/149‑1 (MQ=255)
                                                                tGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTGAGTATGCATTTCAATGCACCACGATAGTGCAACTTACCTGGCGTGCACCATGATGATCATTcc                                                                           <  1:947157/149‑1 (MQ=255)
                                                                tGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTcc                                                                           <  1:1275034/149‑1 (MQ=255)
                                                                  atACACATACCGTCCCATAAAATTAACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCAt                                                                         <  1:573263/148‑1 (MQ=255)
                                                                   tACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATc                                                                        >  2:2544/1‑149 (MQ=255)
                                                                    acacTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTg                                                                                                  >  1:190610/1‑122 (MQ=255)
                                                                    acacTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTg                                                                                                  <  2:190610/122‑1 (MQ=255)
                                                                      acTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAgg                                                                     >  2:1221531/1‑149 (MQ=255)
                                                                      acTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAgg                                                                     <  1:648284/149‑1 (MQ=255)
                                                                          aTCGTGCCATAAAATTGACCATCTAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACa                                                                 <  2:1311612/149‑1 (MQ=255)
                                                                            cGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAAAAAACCTGGCGTGCAACATGATGATCATTCAATCAGGTAAAGc                                                               >  1:1311684/1‑149 (MQ=255)
                                                                              tGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCtt                                                             >  1:175832/1‑149 (MQ=255)
                                                                              tGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCtt                                                             >  1:556374/1‑149 (MQ=255)
                                                                                  atatAATTGACCATCAAGGCAAGAAATCCCGCCCCGTTAGACGTATTATTTTTCATTGTAAATTCTTAAGTGTGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCa                                                         <  2:234921/149‑1 (MQ=255)
                                                                                  aTAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCCTGATGATCATTCCATCAGGTACAGCTTCCCa                                                         >  1:816260/1‑149 (MQ=255)
                                                                                  aTAAAATTGACCAGCAAGGCAATATATCCCGCCCCGGTAGACGTATTATTTTTCATTAAAAAGTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAGCGTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCa                                                         <  2:418796/149‑1 (MQ=255)
                                                                                   tAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAg                                                        >  1:1206357/1‑149 (MQ=255)
                                                                                    aaaaTTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTATTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGc                                                       >  1:286743/1‑149 (MQ=255)
                                                                                       aTTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTc                                                            >  2:715378/1‑141 (MQ=255)
                                                                                       aTTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTc                                                            <  1:715378/141‑1 (MQ=255)
                                                                                        ttGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACg                                                   >  2:1340771/1‑149 (MQ=255)
                                                                                         tGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGt                                                  <  1:387252/149‑1 (MQ=255)
                                                                                             cATCAAGGTAAGATATCTCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCa                                              <  1:790794/149‑1 (MQ=255)
                                                                                                  aGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCAc                                         <  1:1163236/149‑1 (MQ=255)
                                                                                                   ggCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCCCCATGATGAGCATTCCATCAGGTACAGCTTCCCAGCGACGTATCCGTCAcc                                        >  1:273146/1‑149 (MQ=255)
                                                                                                      aagatatCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACTTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTa                                     >  1:1315116/4‑149 (MQ=255)
                                                                                                         ctaccccGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGAc                                  <  1:1139289/145‑1 (MQ=255)
                                                                                                          tatCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACa                                 >  2:842423/1‑149 (MQ=255)
                                                                                                           atCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACAt                                <  2:976289/149‑1 (MQ=255)
                                                                                                              ccGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTaa                             >  1:720642/1‑149 (MQ=255)
                                                                                                              ccGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTaa                             >  1:691412/1‑149 (MQ=255)
                                                                                                               cGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGGTAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGGCACCGTAGACCTTaaa                            >  2:1331305/1‑149 (MQ=255)
                                                                                                               cGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTc                                                                            >  2:1220279/1‑101 (MQ=255)
                                                                                                               cGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTc                                                                            <  1:1220279/101‑1 (MQ=255)
                                                                                                               cGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCa                                                                       >  1:405647/1‑106 (MQ=255)
                                                                                                               cGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCa                                                                       <  2:405647/106‑1 (MQ=255)
                                                                                                               cGCCCCGTTAGACGTATTATTGTTCCTTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTaaa                            <  2:412644/149‑1 (MQ=255)
                                                                                                                   ccGTTAGACGTATTATTGTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCg                        <  1:406565/149‑1 (MQ=255)
                                                                                                                     gTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGaa                      <  2:691412/149‑1 (MQ=255)
                                                                                                                     gTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGaa                      <  2:842842/149‑1 (MQ=255)
                                                                                                                        aGACCTATTATTCTCCATTAAAAACTCTTAAGTATGCATTTGAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCAGTCCAGCAGGTACAGCTTCCCAGCGACGTATTCGCAACCGTAGACATTAAAGTCGAAATa                   <  2:1101006/149‑1 (MQ=255)
                                                                                                                          aCGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACt                 <  1:360402/149‑1 (MQ=255)
                                                                                                                           cttattatTTTTCATTAAACATTCTTAAGTATGCATTTCAATGCACCACGCTAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCAAAGTaggg                <  2:966383/147‑4 (MQ=255)
                                                                                                                                     ttCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTCCACCATGATGATCCTTCGAGGAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTGGACATTAAAGTCGAAATACTTTTTCGCCATc      >  1:346477/1‑149 (MQ=255)
                                                                                                                                         ttAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTa                                                 >  2:1123190/1‑102 (MQ=255)
                                                                                                                                         ttAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTa                                                 <  1:1123190/102‑1 (MQ=255)
                                                                                                                                         ttAAAAATTCTTAAGTATGCATTTCAATGCACCAAGCTAGGGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCACCTTGt  >  2:250860/1‑149 (MQ=255)
                                                                                                                                                 |                                                                                                                                            
ATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGT  >  CP009273/2420249‑2420534

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑