New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP009273 | 3519931 = | 59 (1.080) | 4 (0.080) | 4/288 | 6.9 | 6.1% | coding (104/2136 nt) | yrfF | inner membrane protein |
? | CP009273 | 3519957 = | 65 (1.230) | coding (130/2136 nt) | yrfF | inner membrane protein | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
TGCGACTGACCACGCCTGACAGACTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGG‑GATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGAAAATTATCTTGAGAGCCTGACGCAGGTATTACAGGTGCCTGGCCCAACGGGAGCCAGCGCGGCACCGATCTCTCTGGCGCTGAATGCCGA > CP009273/3519785‑3520078 | tGCGACTGACCACGCCTGACAGACTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGTTGCTTTGCTGGCCTGCTCACTACTTGCGG‑GATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACg > 1:299820/1‑149 (MQ=255) gACCACGCCTGACAGACTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGG‑GATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTcgc > 2:864299/1‑149 (MQ=255) aCGCCTGACAGACTAAGTAAGATGGGGAAAGCATGAGCACCACTGTGATTTTTTTAGCTGCTTTGCTGCCCTGCTCACTACTTGCGC‑GATAGCTGATAAAAGTGCGATCCAATCGGCGCCAGCTGCCCTGGACCACCGCCCTCACGCAt > 1:401237/1‑149 (MQ=255) gCCTGACAGACTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCCCACTACTTGCGG‑GCTGGCTGATAAAAGTGCGAACCAGCCGCCGTCAGCGGCCCTCGACCAACGCCGTCGCGGCTgc > 1:838781/1‑149 (MQ=255) cTGACAGACTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGG‑GATGGCTGGTAAAAGTGCGATCCAGACGGCGTCAGCGGCCCGGGACCACCGCCTGCGCGGATgcgc > 2:36249/1‑149 (MQ=255) cAGACTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGG‑GATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGAATGCGCaacc > 1:613287/1‑147 (MQ=255) cAGACTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGCCCTGCCCACTACTTGCGG‑GATGGCTGATAAACATGCGAGACAGGCGGACTCCGCTGACCCGCACCAACGCCATCCCAGAtcggaaacc > 1:537410/1‑141 (MQ=255) agtaagATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGG‑GATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCACAAACGCGTaaa > 1:682404/1‑149 (MQ=255) gtaagATGGGGAAAGCATGAGCACCGTTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGG‑GATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGCAAACGCGGAAAc > 2:463007/1‑149 (MQ=255) tGGGGAAAGCAGGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCTTGCTCACTACTTGCGG‑GATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGCAAACCCGTAAACTCacac < 1:544237/149‑1 (MQ=255) ggAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGG‑GATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCCACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTg > 2:119525/1‑149 (MQ=255) gAGCACCATTGTGATTTTTGTAGCTGTCTTGCTGGCCTGCTCGCGACTTGGGG‑GATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTa < 1:780262/149‑1 (MQ=255) gCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGG‑GATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAgc < 1:786998/149‑1 (MQ=255) gCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGG‑GATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAgc < 1:524070/149‑1 (MQ=255) cACCATTGTGATTTTTTTAGCTGCTTTGCTGGCATGCTCCGTCATTGCGGCGAT‑CTTCGTGTCATCGCGGTCCGGGCGGAGCCAGCCGTACTTCGTTAATGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAgcg < 1:853772/149‑1 (MQ=255) tgATTTTTTTAGCTGCTTGGCGGGCCTGCTCACTACTTGCGG‑GATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGaa < 2:322226/149‑1 (MQ=255) aTTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGG‑GATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGaaaa > 2:800084/1‑149 (MQ=255) ttttttAGCTGCTTTGCTGGCCTGCTCACTACTTGCGG‑GATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGAAAAtt > 2:442824/1‑149 (MQ=255) tttttAGCTGCTTTGCTGGCCTGCTCACTACTTGCGG‑GATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGAAAATTa < 1:307943/149‑1 (MQ=255) tggcggctTTGCTGGCCTGCTCACTACTTGCGG‑GATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGAAAATTATCtt < 1:565735/144‑1 (MQ=255) ggtgctTTGCTGGCCTGCTCACTACGTGCGG‑GATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACCCCTGAAGAACGTAGCGCCGTTGAAAATTATCTTga < 1:555137/147‑1 (MQ=255) tgctTTGCTGGCCTGCTCACTACTTGCGG‑GATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGAAAATTATCTTgaga < 1:733251/149‑1 (MQ=255) tttGCTGGCCTGCTCACTACTTGCGG‑GATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTGGCGCCGTTGAAAATTATCTTGAGAGcc > 2:56738/1‑149 (MQ=255) gcgggCCCGCTCCCTACTTGCGG‑GATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCATACGTGGATGCGCAAACGCGTACACTCACGCCTGAAGAACGTAGCGCCGTTGAAAATTATCTTGAGAGCCTGa < 1:854493/146‑1 (MQ=255) ccTGCCCACTACTTGCGG‑GATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGAAAATTATCTTGAGAGCCTGACGCAg < 2:299820/149‑1 (MQ=255) cTGGTCACTACTGGCTG‑GATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACGCACACCTGAAGAACGTAGCGCCGTTGAAAATTATCTTGAGAGCCTGACGCAgg < 2:409924/149‑1 (MQ=255) cTCACTACTTGCGG‑GATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGAAAATTATCTTGAGAGCCTGACGCAGGTAt > 1:871527/1‑149 (MQ=255) cTCACTACTTGCGG‑GATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGAAAATTATCTTGAGAGCCTGACGCAGGTAt > 1:416285/1‑149 (MQ=255) cTCACTACTTGCGG‑GATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTACGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGAAAATTATCTTGGAAGCCTGACGCGGGCAt > 1:598941/1‑149 (MQ=255) actactTGCGG‑GATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGAAAATTATCTTGAGAGCCTGACGCCGGTATTAc > 1:210573/1‑149 (MQ=255) actactTGCGG‑GATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGCTGAAAATTGTCTTGAGAGCCTGACGCGGGCATTAc > 1:386663/1‑149 (MQ=255) ctactTGCGG‑GATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGAAAATTATCTTGAGAGCCTGACGCAGGTATTACa < 2:890835/149‑1 (MQ=255) ctactTGCGG‑GATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGAAAATTATCTTGAGAGCCTGACGCAGGTATTACa < 1:432420/149‑1 (MQ=255) ctactGGCGG‑GGTGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGAAAATTATCTTGAGAGCCTGACGCAGGTATTACa < 1:543132/149‑1 (MQ=255) cGG‑GATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGAAAATTATCTTGAGAGCCTGACGCAGGTATTACAGGTGCCt > 1:521662/1‑149 (MQ=255) aTGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGAAAATTATCTTGAGAGCCTGACGCAGGTATTACAGGTGCCTGGcc > 2:192107/1‑149 (MQ=255) gCTGATAAAAGTGCGATCCAGACGGCGTCCGCTGCACATCATAAGCGCCCTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGCTGAAAATTATCTTGAGAGCCGGACGCAGGGATTACAGGTGCCGGGccccg > 1:592614/1‑147 (MQ=255) gCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGAAAATTATCTTGAGAGCCTGACGCAGGTATTACAGGTGCCTGGCCCaa < 2:401237/149‑1 (MQ=255) tAACAGTGCGATCGAGCTGGCGTCATCTGACCTGGACCAACGCCATAGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGAAAATTATCTTGAGAGCCTGACGCAGGTATTACAGGTGCCTGGCCCAACGGGa < 2:853181/149‑1 (MQ=255) aaaaGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGAAAATTATCTTGAGAGCCTGACGCAGGTATTACAGGTGCCTGGCCCAACGGGAg > 1:18433/1‑149 (MQ=255) aGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGCCAATATTCTGGAGAGCCGGACGCAGGGATTACCGGTGCCTGGACCCACGGGAGCCa > 2:691995/1‑149 (MQ=255) gATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGAAAATTATCTTGAGAGCCTGACGCAGGTATTACAGGTGCCGGGCCCAACGGGAGCCAGcgcg > 2:111536/1‑149 (MQ=255) gATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGAAAATTATCTTGAGAGCCGGACCCCGGTCTTCCGGGTGCCTGGCCCAACGGGAGCCAGcacg > 2:111552/1‑149 (MQ=255) aTCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCGGTTGAAAATTATCTTGAGAGCCTGACGCAGGTATTACAGGTGCCTGGCCCAACGGGAGCCAGCGCgg > 2:84680/1‑149 (MQ=255) tCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGCAAATTATCTTGAGAGCCTGACGCAGGTATTACAGGTGCCTGGCGCAGCGGGAACCAGcgccgc > 2:755225/1‑149 (MQ=255) cAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGAAAATTATCTTGAGAGCCTGACGCAGGTATTACAGGTGCCTGGCCCCACGGGAGCCAGCGCGGccc > 1:83453/1‑147 (MQ=255) gCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGAAAATTATCTTGAGAGCCTGACGCAGGTATTACAGGTGCCTGGCCCAACGGGAGCCAGCGCGGCACCGAtct < 1:598717/149‑1 (MQ=255) ccgCTGCCCTCGACCACAGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGAAAATTATCTTGAGAGCCTGACGCAGGTATTACAGGTGCCTGGCCCAACGGGAGCCAGCGCGGCACCGATctctct < 1:473364/147‑1 (MQ=255) cTGCCCTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGAAAATTATCTTGAGAGCCTGACGCAGGTATTACAGGTGCCTGGCCCAACGGGAGCCAGCGCGGCACCGATCTCTCTGgc < 1:466538/149‑1 (MQ=255) ccTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGAAAATTATCTTGAGAGCCTGACGCAGGTGTTACGGGTGCCTGGCCCAACGGGAGCCAGCGCGGCACCGATCTCTCTGGAGCTg > 1:595473/1‑149 (MQ=255) ccTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGAAAATTATCTTGAGAGCCTGACGCAGGTATTACAGGTGCCTGGCCCAACGGGAGCCAGCGCGGCACCGATCTCTCTGgcg < 1:780361/146‑1 (MQ=255) ccTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGAAAATTATCTTGAGAGCCTGACGCAGGTATTACAGGTGCCTGGCCCAACGGGAGCCAGCGCGGCACCGATCTCTCTGgcg > 2:780361/1‑146 (MQ=255) cTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGAAAATTATCTTGAGAGCCTGACGCAGGTATTACAGGTGCCTGGCCCAACGGGAGCCAGCGCGGCACCGATCTCTCTGGCGCTGa > 1:590847/1‑149 (MQ=255) cTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGAAAATTATCTTGAGAGCCTGACGCAGGTATTACAGGTGCCTGGCCCAACGGGAGCCAGCGCGGCACCCATCTCTCTGGCGCTGa > 2:86120/1‑149 (MQ=255) tGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGAAAATTATCTTGAGAGCCTGACGCAGGTATTACAGGTGCCTGGCCCAACGGGAGCCAGCGCGGCACCGATCTCTCTGGCGCTGaa < 1:412519/149‑1 (MQ=255) aCCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGAAAATTATCTTGAGAGCCTGACGCAGGTATTACAGGTGCCTGGCCCAACGGGAGCCAGCGCGGCACCGATCTCTCTGGCGCTGAATGc < 2:330975/149‑1 (MQ=255) aCCAACGCCCTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGAAAATTATCTTGAGAGCCTGACGCAGGTATTACAGGTGCCTGGCCCAACGGGAGCCAGCGCGGCACCGATCTCTCTGGCGCTGAATGc < 1:704765/149‑1 (MQ=255) ccAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGAAAATTATCTTGAGAGCCTGACGCAGGTATTACAGGTGCCTGGCCCAACGGGAGCCAGCGCGGCACCGATCTCTCTGGCGCTGAATGcc < 1:463007/149‑1 (MQ=255) aaCGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGAAAATTATCTTGAGAGCCTGACGCAGGTATTACAGGTGCCTGGCCCAACGGGAGCCAGCGCGGCACCGATCTCTCTGGCGCTGAATGCCGa < 2:331791/149‑1 (MQ=255) | TGCGACTGACCACGCCTGACAGACTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGG‑GATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGCAAACGCGTAAACTCACACCTGAAGAACGTAGCGCCGTTGAAAATTATCTTGAGAGCCTGACGCAGGTATTACAGGTGCCTGGCCCAACGGGAGCCAGCGCGGCACCGATCTCTCTGGCGCTGAATGCCGA > CP009273/3519785‑3520078 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |