| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,419,720 | T→C | 11.2% | D183G (GAT→GGT) | hisJ ← | histidine/lysine/arginine/ornithine transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,419,720 | 0 | T | C | 11.2% | 261.9 / 21.5 | 108 | D183G (GAT→GGT) | hisJ | histidine/lysine/arginine/ornithine transporter subunit |
| Reads supporting (aligned to +/- strand): ref base T (48/46); new base C (4/8); total (53/55) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.60e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.72e-01 | |||||||||||
Only 100 of 108 total aligned reads displayed.
TCGCGCAGTTCGTTATCTTCTTTACGCAGGCCCATGCCGGTCCCTACGCCAAACAGTTTTTCATCTTTAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGATTTCAATGCCT‑TTTGGTGCCCAATGTTCATTACCGAACGTCTCCTGGGTGGTGCCCTGCAATACGCCTACCCGT > CP009273/2419579‑2419866 | tCGCGCAGTTCGTTATCTTCTTTACGCAGGCCCATGCCGGTCCCTACGCCAAACAGTTTTTCATCTTTAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATc < 2:963273/143‑1 (MQ=255)tCGCGCAGTTCGTTATCTTCTTTACGCAGGCCCATGCCGGTCCCTACGCCAAACAGTTTTTCATCTTTAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGaa > 1:1299955/1‑149 (MQ=255) ggcAGTTCGTTATCTTCTTTACGCAGGCCCATGCCGGTCCCTACGCCAAACAGTTTTTCATCTTTAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAAcgc < 1:104557/148‑1 (MQ=255) cgcAGTTCGTTATCTTCTTTACGCAGGCCCATGCCGGTCCCTACGCCAAACAGTTTTTCATCTTTAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTg > 2:925001/1‑143 (MQ=255) cgcAGTTCGTTATCTTCTTTACGCAGGCCAATGCCAGTACCTACGCCAAACAGTTTTTCATCTTTAACAGACGGGCCACCGACTTTGTAATCTTTGCCGACAGGTTGTTTGAGGAAACCTTCGCTGACGGCGACCTCATCCTg > 2:517350/1‑143 (MQ=255) gcAGTTCGTTATCTTCTTTACGCAGGCCCATGCCGGTCCCTACGCCAAACAGTTTTTCATCTTTAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAAcgcg < 1:830112/149‑1 (MQ=255) gcAGTTCGTTATCTCCTTTACGCAGGCCCATGCCGGTCCCTACGCCAAACAGTTTTTCATCTTTAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAAcgcg < 1:172253/149‑1 (MQ=255) cAGTTCGTTATCTTCTTTACGCAGGCCCATGCCGGTCCCTACGCCAAACAGTTTTTCATCTTTAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCgg < 1:444985/149‑1 (MQ=255) cAGTTCGTTACCTTCTTTACGCAGGCCCATGCCGGTCCCTACGCCAAACAGTTTTTCATCTTTAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCgg < 1:489684/149‑1 (MQ=255) aGTTCGTTATCTTCTTTACGCAGGCACATGCCGGTCCCTACGCCAAACAGTTTTTCATCTTTAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGc < 1:1002014/149‑1 (MQ=255) cGTTATCTTCTTTACGCAGGCCCATGCCGGTCCCTACGCCAAACAGTTTTTCATCTTTAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAAcgcg < 2:903412/143‑1 (MQ=255) gTTATCTTCTTTACGCAGGCCCATGCCGGTCCCTACGCCAAACAGTTTTTCATCTTTAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCgg < 2:1128866/143‑1 (MQ=255) gTTATCTTCTTTACGCAGGCCCATGCCGGTCCCTACGCCAAACAGTTTTTCATCTTTAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCaa > 1:1201831/1‑149 (MQ=255) gTTATCTTCTTTACGCAGGCCCATGCCGGTCCCTACCGGCAACAGTTTTTCATCTTTAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCaa > 1:1285736/1‑149 (MQ=255) ttATCTTCTTTACGCAGGCCCATGCCGGTCCCTACGCCAAACAGTTTTTCATCTTTAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGCCCTCATCCTGGAACGCGGCCTCAAt > 1:68645/1‑149 (MQ=255) tATCTTCTTTACGCAGGCCCATGCCGGTCCCTACGCCAAACCGTTTTTCATCTTTAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTGGCTGGCAGCGACCTCATCCTGGAACGGGGCa > 2:380092/1‑143 (MQ=255) tATCTTCTTTACGCAGGCCCATGCCGGTCCCTACGCCAAACAGTTTTTCATCTTTAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCACCCTGGAACGCGGCa > 2:939297/1‑143 (MQ=255) ttcttTACGCAGGCCCATGCCGGTCCCTACGCCAAACAGTTTTTCATCTTTAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCaa > 2:803123/1‑143 (MQ=255) tcttgccGCAGGCCCTTGCCGGTGCCTGCGCCAAACAGTTGTTCATCTTGAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTcc < 1:559953/143‑1 (MQ=255) tttACGCAGGCCCATGCCGGTCCCTACGCCAAACAGTTTTTCATCTTTAACAGACGGGCCACCGAATTTGTACTCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGACAGCGACCTCACCCTGGAACGCGGCGTCAATAc > 2:436208/1‑143 (MQ=255) gttACGCAGGCCCCTGCCGGTCCCTACGCCAAACAGTTTTTTATCTTTAACAGACGGGCCACCGAATTTGCAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCgg < 1:420492/148‑1 (MQ=255) aCGCAGGCCCATGCCGGTCCCTACGCCAAACAGTTTTTCATCTTTAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTCTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCCTCAATACGTCCGGcca > 1:881185/1‑147 (MQ=255) cGCAGGCCCATGCCGGTCCCTACGCCAAACAGTTTTTCATCTTTAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAgt < 1:604781/149‑1 (MQ=255) ccggCCCATGCCGGTCCCTACGCCAAACAGTTTTTCATCTTTAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCgg < 2:28742/141‑1 (MQ=255) cAGGCCCATGCCTGTCCCTACGCCAAACAGTTTTTCATCTTTAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCgg < 2:439057/143‑1 (MQ=255) cAGGCCCATGCCGGTCCCTACGCCAAACAGTTTTTCATCTTTATCAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCgg < 2:774067/143‑1 (MQ=255) ccATGCCGGTCCCTACGCCAAACAGTTTTTCATCTTTAACAGACGGGCCACCGAATTGGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATCCGTCCGCCAgtcaggaca > 1:450916/1‑149 (MQ=255) cATGCCGGTCCCTACGCCAAACAGTTTTTCATCTTTAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCGTGGACCGCGGCATCAATACGTCCGGCAgtcaggtcag > 1:468814/1‑149 (MQ=255) cGGTCCCTACGCCAAACAGTTTTTCATTTTTATCAGGCGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAATCTTCGCTGGCAGCGGCCTCATCCTGGAACGCGGCATCAATACGTCCGGCAgtcaggtca < 2:894525/143‑1 (MQ=255) cGGTCCCTACGCCAAACAGTTTTTCATCTTTAACAGACGGGCCACCGCATGTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGTGAGCGCCCTCCTCCTGGAACGCGGCATCCATCCGTCCGGCCgtcaggtca > 2:542483/1‑143 (MQ=255) cGGTCCCTACGCCAAACAGTTTTTCATCTTTAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAgtcaggcta > 2:1145214/1‑140 (MQ=255) ggTCCCTACGCCAAACAGTTTTTCATCTTTAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATaaa < 1:1158837/149‑1 (MQ=255) ttcGCCAAACAGTTTTTCATCTTTAACAGACGGGCCACCGAATTTGTAATCTCTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCCATCCGTCCCGCAGTCAGGTCAGAATaaa < 2:520814/141‑1 (MQ=255) tACGCCAAACAGTTTTTCATCTTTAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGaaaaaa > 2:340382/1‑143 (MQ=255) tACGCCAAACAGTTTTTCATCTTTAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTAGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATaaa < 2:276908/143‑1 (MQ=255) cGCCAAACAGTTTTTCATCTTTAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCACCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAAtg < 2:441797/143‑1 (MQ=255) cGCCAAACAGTTTTTCATCTTTAACAGACGGGCCACCGAATTTGTAATCGTTACCGACAGGTTGTTTGAGGAAACCTGCGCTGGCAGCGACCTCACCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAAtg < 2:655745/143‑1 (MQ=255) cAAACAGTTTTTCATCTTTAACAGACGGGCCACACATCTAGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGc < 1:358509/149‑1 (MQ=255) aaCAGTTTTTCATCTTTAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGccc < 1:1066941/149‑1 (MQ=255) cAGTTTTTCATCTTTACCAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCt < 2:613455/143‑1 (MQ=255) cAGTTTTTCATCTTTAACAGACGGGCCACCGAACTAGTAATCTTTACCGACAGGTTGTTTGACGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCt < 1:883045/149‑1 (MQ=255) ttttCATCTTTAACAGTCGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGccc < 2:883556/143‑1 (MQ=255) ttttCATCTTTAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGccc < 2:461359/143‑1 (MQ=255) tCATCTTTAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCACCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACga < 1:1068323/149‑1 (MQ=255) cATCTTTAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCATAATAAATGTTGTCCTGCCCCTGa < 2:381393/143‑1 (MQ=255) tCTTTAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAGCCTTCGCTGGCAGCGACCTCACCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGAc < 1:1216388/149‑1 (MQ=255) tCTTTAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATa < 2:643887/143‑1 (MQ=255) tCTTTAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCACCTGATACGAGAc > 1:330600/1‑149 (MQ=255) tCTTTAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTCGAGGAAGCCTTCGCTTGCAGCTACCACAGCCTGGAACGCGGCATCAAGACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGAc < 1:973048/149‑1 (MQ=255) tttAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTGAGATCAGAATAAATGTTGTGCTGCCCCTGATTCg > 2:216361/1‑143 (MQ=255) tttAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGa > 1:924810/1‑149 (MQ=255) tttAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGa > 1:774698/1‑149 (MQ=255) tttAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTAATACg > 2:591116/1‑143 (MQ=255) tttAACAGACGGGCCACCGAATTTGCAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGa > 1:774779/1‑149 (MQ=255) tttAACAGACGGGCCACCGAATTTGCAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGGCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGa > 1:775285/1‑149 (MQ=255) ttAACAGCCGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGAt < 1:163479/149‑1 (MQ=255) aGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCACCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGATTTCaa > 1:195081/1‑149 (MQ=255) aGACGGGCCACCGAATTTGTAATCTTTACCGACAAGATGGTTGAGGAAACCTTCGCTGGCAGCGACCTCGTCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATGCGAGACGa > 2:805797/1‑143 (MQ=255) aGACGGGCAACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCGCATCCTGGAACGCGGCAGCAATACGTCCGGCAGGCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACgaagcga > 2:920447/1‑138 (MQ=255) cGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGAttt < 2:947811/143‑1 (MQ=255) cACCGAATTTGTAATCTTTACCGACAGGATGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGGACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAAGGTTGTCCAGCCCCTGGTACGAGACGATTACAATg > 2:630123/1‑143 (MQ=255) aCCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGATTTCAATGc > 2:1032930/1‑143 (MQ=255) aCCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGATTTCAATGCCT‑TTTg < 1:1126103/149‑1 (MQ=255) ccGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCACAATAAATGTTGTCCTGCCCCTGATACGAGACGATTTCAATGcc > 2:742828/1‑143 (MQ=255) cGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGATTTCAATGCCt > 2:291495/1‑143 (MQ=255) cGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGATTTCAATGCCT‑TTTGGt > 1:172133/1‑149 (MQ=255) aaTTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGATTTCAATGCCT‑TTTGGTGc < 1:1032220/149‑1 (MQ=255) ttGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGATTTCAATGCCT‑TTTGGTGCCCa > 1:1300094/1‑149 (MQ=255) ttGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTAGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCATGCCCCTGATACGAGACGAGTTCAATGCCT‑TTTgg > 2:612138/1‑143 (MQ=255) tAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGAGTTTAATGCTC‑TTTGGTGc > 2:96545/1‑143 (MQ=255) tAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTACGGCCGTCAAGTCAGAAGAAATGTTGTCCTGCCCCTGATACGAGACGATTTCAATGCCT‑TTTGGTGc > 2:123398/1‑143 (MQ=255) aaTCCTCACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGTCCGAATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAAGGTTGTCCTGCCCCTGATACGAGACGATTTCAATGCCT‑TTTGGTGCCCAATGt < 1:498294/149‑1 (MQ=255) aTCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGATTTCAATGCCT‑TTTGGTGCCCCATGtt > 1:1151255/1‑149 (MQ=255) tCTTTACCGACAGGTTGTTTTAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCCGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGATTTCAATGCCT‑TTTGGTGCCCa < 2:1137764/143‑1 (MQ=255) tCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCGGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGATTTCAATGCCT‑TTTGGTGCCCAATGTTc < 1:800742/149‑1 (MQ=255) cGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGATTTCAATGCCT‑TTTGGTGCCCAATGTTCATTACCg > 1:238914/1‑149 (MQ=255) aCAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGGTACGAGACGATTTCGATGCCT‑TTTGGTGCCCAATGTTCATTACCgga > 1:357814/1‑147 (MQ=255) cAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCAGTCCCTGATTCGAGACGATTTCAATGCCT‑TTTGGTGCCCAATGTTCATTACCGAAc < 1:255260/149‑1 (MQ=255) ttgttTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGATTTCAATGCCT‑TTTGGTGCCCAATGTTCATTACCGAACGtct > 1:1111810/1‑149 (MQ=255) tttGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGATTTCAATGCCT‑TTTGGTGCCCAATGTTGATTACGGAACg > 2:239094/1‑143 (MQ=255) tttGAGGAAACCTTCGCTGGCAGCGACCTCACCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGATTTCAATGCCT‑TTTGGTGCCCAATGTTCATTACCGAACGTCTCCt < 1:309910/149‑1 (MQ=255) ttGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCGGATACGAGACGATTTCAATTCCT‑TTTGGTGCCCAATGTTCATTACCGAACGTCTCCTg > 1:1021852/1‑149 (MQ=255) gAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGATTTCAATGCCT‑TTTGGTGCCCAATGTTCATTACCGAACGtct > 2:563814/1‑143 (MQ=255) aGGAAACCTTCGCTGGCAGCGCCCTCACCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGACTTCACTGCCT‑TTTGGCGCCCAATGTTCATTACCGAACGtctc < 2:873986/143‑1 (MQ=255) aGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGATTTCAATGCCT‑TTTGGTGCCCAATGTTCATTACCGACCGTGTCCttgct > 1:1259934/1‑145 (MQ=255) ggAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGATTTCAATGCCT‑TTTGGTGCCCAATGTTCATTACCGAACGTCTcc > 2:90588/1‑143 (MQ=255) cgtggccggCCGCGACCTCACCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGGCGATTTCAATGCCT‑TTTGGTGCCCAATGTTCATTACCGAACGTCTCCTGggtg < 2:67395/136‑1 (MQ=255) cTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGATTTCAATGCCT‑TTTGGTGCCCAATGTTCATTACCGAACGTCTCCTGggtg < 2:72727/143‑1 (MQ=255) cTTCGCTGCCAGCGCCCTCACCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGATTTCAATGCCT‑TTTGGTGCCCAATGTTCATTACCGAACGTCTCCTGggtg < 2:674970/143‑1 (MQ=255) cTGGCAGCGACCTCCTCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGATTTCAATGCCT‑TTTGGTGCCCAATGTTCATTACCGAACGTCTCCTGGGTGGTGCCCTGCaa < 1:862851/149‑1 (MQ=255) ggCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGATTTCAATGCCT‑TTTGGTGCCCAATGTTCATTACCGAACGTCTCCTGGGTGGTGCCCt < 2:1152620/143‑1 (MQ=255) gCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGCTTTCAATGCCT‑TTTGGTGCCCAATGTTCATTACCGAACGTCTCCTGGGTGGTGCCCTGCAATAc > 1:648075/1‑149 (MQ=255) gCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGATTTCAATGCCT‑TTTGGTGCCCAATGTTCATTACCGAACGTCTCCTGGGTGGTGCCCTGCAATAc > 1:519450/1‑149 (MQ=255) accGACCTCATCCTGGAACCCGGCATCACACCGTCCGGCAGTGAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGATTTCAATGCCT‑TTTGGGGCCCAATGTTCATTACCGAACGTCTCCTGGGTGGTGCCCTGCAATACGc < 1:564505/147‑1 (MQ=255) aGCGACCTCATGCTGGAACGCGGCATCAATCCGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGATTTCAATGCCT‑TTTGGTGCCCAATGTTCATTACCGAACGTCTCCTGGGTGGTGCCCTGCa < 2:967876/143‑1 (MQ=255) aGCGAAGTCAGCCGGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATGAATGTTGTCCTGCCCCTGATACGAGACGATTTCAATGCCT‑TTTGGTGCCCAATGTTCATTACCGAACGTCTCCTGGGTGGTGCCCTGCa > 2:1112661/1‑143 (MQ=255) cGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGATTTCACTGAATATTTGGT‑CCCAATGTTCATTACCGAACGTCTCCTGGGTGGTGCCCTGCAATACGCCt > 1:1273477/1‑149 (MQ=255) cGACCTCATCCTGGAACGCGGCATCAATACGTCCGACAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGATTGCAATGCCT‑TTTGGTGCCCAATGTTCATTACCGAACGTCTCCTGGGTGGTGCCCTGCAAt > 2:1118030/1‑143 (MQ=255) gACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGATTTCAATGCCT‑TTTGGTGCCCAATGTTCATTACCGAACGTCTCCTGGGTGGTGCCCTGCAATa > 2:658775/1‑143 (MQ=255) cATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGATTTCAATGCCT‑TTTGGTGCCCAATGTTCATTACCGAACGTCTCCTGGGTGGTGCCCTGCAATACGCCTACCCGt < 1:970751/149‑1 (MQ=255) | TCGCGCAGTTCGTTATCTTCTTTACGCAGGCCCATGCCGGTCCCTACGCCAAACAGTTTTTCATCTTTAACAGACGGGCCACCGAATTTGTAATCTTTACCGACAGGTTGTTTGAGGAAACCTTCGCTGGCAGCGACCTCATCCTGGAACGCGGCATCAATACGTCCGGCAGTCAGGTCAGAATAAATGTTGTCCTGCCCCTGATACGAGACGATTTCAATGCCT‑TTTGGTGCCCAATGTTCATTACCGAACGTCTCCTGGGTGGTGCCCTGCAATACGCCTACCCGT > CP009273/2419579‑2419866 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |