New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP009273 | 1203246 = | 9 (0.170) | 43 (0.900) | 38/258 | 0.3 | 86.0% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
? | CP009273 | 1205075 = | 6 (0.130) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related |
TTCCATCCCCCCCAGAGGCAGATGCTTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1203404‑1203246 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGA > CP009273/1205075‑1205218 TTCCATCCCCCCCAGAGGCAGATGCTTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCT > 1:536139/1‑149 acCCCCCCCAGAGTCAGATGCTTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCGCCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTT < 2:447467/141‑1 CCCCCAGAGGCAGATGCTTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTTTCCCAAACC > 1:248373/1‑149 TTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATGAACGGTCTCGCTATGAAACCGGTGCGACCTCATG‑TAGCCGTTGCTGCATTGCGTTTTGCCCCTTCTCCCCAACCAACCTTagcgaaa > 2:23616/1‑136 GCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACTGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAAT < 2:403292/143‑1 GGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGA > 2:821794/1‑143 GCATTCCACCCCCACTGAATGGTTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAA < 2:340669/143‑1 ATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAAC < 1:814993/149‑1 ATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAAC < 1:523608/149‑1 ACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTACGTGCTAATA‑TAGCCGTTGCTGCATAGAGTTTTGCTCCTTACCCCAAACCAACGTTTATGAACATGACGAAATAA > 2:715055/1‑143 CCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGGTTATGAAAATGAAGAAATAACA > 2:376791/1‑143 cAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAAT < 2:336727/142‑1 GATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCCAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTC > 1:434708/1‑149 ATTACTGATTGCTCAATACCACAAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGATTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATAGCAT > 2:738262/1‑143 ACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC < 1:695304/149‑1 TGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGT‑CAATTGTTAGCTGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCGAATGGCATCATTCCTGCTT < 1:666701/149‑1 tTTGCTCAATACCACCAACCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTCTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTT < 1:396434/148‑1 TGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGAAAATGACATCATTCCTGCTTTTAC > 1:241611/1‑149 AATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGATCCTTCTCCCAAACCAACGTTTATGAAAATGAAAAAATAACAAGAAAATGTCAACAATCCTGCTTTTA > 2:134882/1‑143 ATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGG < 1:328626/149‑1 TACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACC < 2:532371/143‑1 CCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAT > 1:299531/1‑149 ACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGG > 2:692516/1‑143 CCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGG > 2:733048/1‑143 CAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCTAACCAACGTTTATGCAGAAGAAAAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGG > 2:624767/1‑143 ATCATAACCGGTACAGCTATGAAACCGGCGCGTCCTAATG‑TAGCAATCGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACA < 1:437522/149‑1 TAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAA < 2:297190/143‑1 CCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCAGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACAT < 2:567799/143‑1 CGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATT < 1:105173/149‑1 AGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATT > 2:34573/1‑143 CTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCACATGGCAGCATCCCTGCTTTTACCA‑GGGGATTTAACATGCTTATTGGCTATGTA > 1:210850/1‑149 TATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTA > 1:786012/1‑149 agCCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGT < 1:353109/147‑1 AACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTGCTGCTTTTACCAGCGGGATTTAACATGCTTATTGGCTATGTACGCGT < 1:590343/149‑1 AACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGT < 1:58575/149‑1 aCGGTCCGTCCGAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAATTGTCAGCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTAT < 1:308887/148‑1 CGTCCGAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTGTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTAT < 2:474206/143‑1 TCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCGGGGGGGTTTAACATGCTTATTGGCGAGGTACGCGTATCAAAAAAT > 1:19801/1‑149 TG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAG < 1:430405/149‑1 TAGCCGTTGCTGCATTGAGTTTTGCTCCTTTCCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAA < 1:421318/149‑1 AGCCGTTGCTCCATTGAGTTTTGCTCCTTCTACCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAC < 2:497183/143‑1 TGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGAT < 1:801298/149‑1 TGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTg > 1:545750/1‑148 TTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAGCAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGCCTATGTACGCGTATCAACAAATGACCACAACAAAGATC > 2:363850/1‑143 GAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAACTAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGT > 1:181751/1‑149 TTTTGCTCCTTCTCCCAAACCAACGTTTAGTAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAA < 2:559824/143‑1 TTCTCCCAAACCAACGTTTATGAAAAAGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCGATGTACGCATCTCAACAAGTTACCAGAACACGAATCTACAAAGTAATGgg > 2:294372/1‑141 TCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACT < 1:894571/149‑1 CCCAAACCAACGTTTATGAAAATGAAGAAATAAGAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTG > 1:585595/1‑149 CCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTG < 1:757950/149‑1 CCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGATGA > 2:487804/1‑143 CCCAAACCAACGTGTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCATGCTTTTAACAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTAACAACAAATGACCATAACCCAGAGCTACAACGGAATGCGCCGA > 2:8991/1‑143 ACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGA > 1:911789/1‑149 CAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGC < 2:701724/143‑1 TTCCATCCCCCCCAGAGGCAGATGCTTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1203404‑1203246 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGA > CP009273/1205075‑1205218 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |