New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2269338 =	3 (0.060)	44 (0.820)	39/290	0.4	93.6%	coding (587/1026 nt)	yejE	microcin C transporter YejABEF, permease subunit; ABC family
	?	CP009273	= 3577555	NA (NA)					intergenic (+15/‑1)	insB1/yrhA	IS1 transposase B/pseudogene, interrupted by IS1E

CGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCAT  >  CP009273/3577415‑3577693                                                                                                                                             |                                                                                                                                           cGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTAGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTaa                                                                                                                                    >  1:220730/1‑149 (MQ=25)   gCATAACCTGGATCTGAGGCAGCACCTGGCACGCATGGGACGGGAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTaaaa                                                                                                                                  <  1:253272/149‑1 (MQ=255)      tAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGACCATAAAACACTATCAATAAGTTGGAGTCATTACGGAGATTAAAAGTa                                                                                                                               >  1:419060/1‑149 (MQ=255)         ccgtgaTCCGACGCAGCACCGTGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCTGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTaaaa                                                                                                                                  <  2:774871/138‑1 (MQ=11)           tGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACttt                                                                                                                          <  1:465157/149‑1 (MQ=40)              aTCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACtttttt                                                                                                                       >  1:903049/1‑149 (MQ=255)                 tGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGaa                                                                                                                    <  1:684625/149‑1 (MQ=255)                  gAGGCTGCAGCTGGCACGGCTGGGAGGTAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTCGAGTCATTACCGACATTAAAAGTAACtttt                                                                                                                         <  2:571982/143‑1 (MQ=14)                       ggcaCCTTGCACGGCGGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGaa                                                                                                                    <  2:495232/142‑1 (MQ=255)                         caCCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCCTTACCGACATTAAAAGTAACTTTTTTGAAATTAgaga                                                                                                            <  1:594371/149‑1 (MQ=255)                           tcTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAAGCGGTGGGCCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGata                                                                                                          <  1:173705/148‑1 (MQ=255)                                cACGGCTGGGACGGAAGTCGCTGTCGTTCTCTAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACAATATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATAtt                                                                                                     <  1:614851/149‑1 (MQ=255)                                cACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGGGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATAtt                                                                                                     <  1:537653/149‑1 (MQ=255)                                     cTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAatat                                                                                                      >  2:263270/1‑143 (MQ=255)                                          aCGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGaaa                                                                                           <  1:541002/149‑1 (MQ=255)                                            ggAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAat                                                                                         <  1:182516/149‑1 (MQ=255)                                                   tcggTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACACAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAata                                                                                        <  2:621249/140‑1 (MQ=255)                                                     tGTCGTTCTCAAAATCGGTGGAGCTGAATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGATTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGt                                                                                <  1:128397/149‑1 (MQ=255)                                                          ttCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAGCACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGCAATTAGAGTTAATATTTGCCCAGAACATATATTCAGTTCgat                                                                           >  1:357433/1‑147 (MQ=18)                                                             tcAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAg                                                                        >  1:318750/1‑149 (MQ=255)                                                             tcAAAAACGATAAAGCTGCATAGAAAAATCATCGGGCATTATCGGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACCTTAAAAGTAACTTTTTTGAAGTTAGCAATAATATTGGCACAGAAAATAAATACAGTTc                                                                              >  2:282305/1‑143 (MQ=18)                                                                aaaTCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGa                                                                     >  1:227797/1‑149 (MQ=255)                                                                     ggTGGAGCTGCAGGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGGTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTtct                                                                <  1:124530/149‑1 (MQ=255)                                                                              gCATGACAAGGGCATCGGGCATTAGCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCt                                                       <  1:161889/149‑1 (MQ=255)                                                                               cATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTc                                                            >  2:229389/1‑143 (MQ=255)                                                                               cATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCtt                                                      >  1:504984/1‑149 (MQ=255)                                                                                 tGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCAt                                                          >  2:821609/1‑143 (MQ=255)                                                                                 tGACAAAGTCATCGGGCATTATCTGAACATAAAACACTACTAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTTAAACCAGAAATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTaa                                                    <  1:630982/149‑1 (MQ=37)                                                                                   aCAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTGGTTTAGTGATTTCTCTTCAttt                                                        >  2:321750/1‑142 (MQ=255)                                                                                       aGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGaaa                                              <  1:701645/149‑1 (MQ=255)                                                                                              gggCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGa                                       >  1:742321/1‑149 (MQ=255)                                                                                                gCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACa                                     <  1:152588/149‑1 (MQ=255)                                                                                                 cATTATCCGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAg                                    >  1:196842/1‑149 (MQ=255)                                                                                                       cTGAACATAAAACACTATCAATAAGTGGTAGTCATCACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATACGATTGGCACAGAAATTATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATTGACAg                                    >  2:806287/1‑143 (MQ=39)                                                                                                             aTAAAACACTATCCATAAGTTGGAGCCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCATAGAAAAAATGTCCAGTTCGTTTAGTGATTTCTCGTCATTCTTAAACGAAATCATGGACAGTTGTTCataata                        <  1:176677/149‑1 (MQ=255)                                                                                                             aTAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCataata                        >  1:247574/1‑149 (MQ=255)                                                                                                              tAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTTTTTTTTTTTATAAAATTGGCACAGAAAATATATTTAGTTTGTTTTGTGATTTCTCTTCATTCTTTAACGAAATCATGGACAGTTTTTCa                             >  2:563948/1‑143 (MQ=25)                                                                                                              tAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCAtaataa                       <  1:277610/149‑1 (MQ=255)                                                                                                               aaaaCACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCat                            <  2:841625/143‑1 (MQ=255)                                                                                                               aaaaCACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATaataat                      <  1:619281/149‑1 (MQ=255)                                                                                                                 aaCACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCataa                          <  2:363310/143‑1 (MQ=255)                                                                                                                  acacTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCGGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCataat                         >  2:603364/1‑143 (MQ=255)                                                                                                                               gTTGGAGTCATTACCGACATTAAAAGTAACGTTTGTCAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTTATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGaaa            <  2:475940/143‑1 (MQ=255)                                                                                                                                ttGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTGAAGGAAAGGATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAAt     >  1:70982/1‑149 (MQ=255)                                                                                                                                       cATTACCGACATTAAAATTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATc    <  2:448564/143‑1 (MQ=255)                                                                                                                                         ttACCGACATTAAAAGTAACTTTTTTGTTTTTTGTTATAATATTAGCAAAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGTACAGTTGTTCATAATAATCAAAAGGAAACAATAATCAt  >  2:282182/1‑143 (MQ=255)                                                                                                                                             |                                                                                                                                           CGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCAT  >  CP009273/3577415‑3577693

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.