| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1463497 | NA (NA) | 10 (0.200) | 9/272 | NT | 21.7% | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | CP009273 | = 1584819 | 36 (0.730) | intergenic (‑26/+292) | yneL/hipA | pseudogene, AraC family/inactivating GltX kinase facilitating persister formation; toxin of HipAB TA pair; autokinase | |||||
ATGGGATAGCTTTCGTAACCGACAGCATAGGCTGCTGTGGTGACATCGTAATGTTCATTCAGCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCATGCACAGGCCAATTATGAAAGAGGAGAGGCTTAAGTTCTTGAACCCTGAACGAAT > CP009273/1584675‑1584967 | cttgcagaggcgttcgagcattataccgaatggcatccgcatagtgcgctgggttatcgctcgcaacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAataagcaat < 1:239586‑M1/10‑5 (MQ=255) tGGGATAGCTGTCGTAACCGACAGCATAGGCTGCTGTGGTGACATCGTAATGTTCATTCAGCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCGCTTGGTCCGTCCTTAAATAAGTAACa > 1:272876/1‑149 (MQ=255) tattCGTAACCGACAGCATAGGCTGCTGTGGTGACATCGTAATGTTCATTCAGCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGGGGACTCATTCCCGCTTGATCCGTCCTTAAATAGGTAACAGCGCCctc > 1:539247/3‑149 (MQ=255) tttCGTAACCGACAGCATAGGCTGCTGTGGTGACATCGTAATGTTCATTCAGCATCTGTCGCCTGACGTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAACTACGtagactggccccct < 1:833758‑M2/149‑15 (MQ=255) cGTAACCGACAGCATAGGCTGCTGTGGTGACATCGTAATGTTCATTCAGCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGCGTGGACTCATTCCCGCTTGATCCGTCCTTATATAGTTAACTGCCCCCTCTGgt > 2:16844/1‑149 (MQ=255) cGTAACCGACAGCATAGGCTGCTGTGGTGACATCGTAATGTTCATTCAGCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGgt > 1:861131/1‑149 (MQ=255) gTAACCGACAGCATAGGCTGCTGTGGTGACATCGTGATGTTCATTCAGCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCGCTTGATCCGTTCTTAAATAAGTAACAACACCCTCTGgtg < 2:486836/149‑1 (MQ=255) cGACAGCATAGGCTGCTGTGGTGACATCGTAATGTTCATTCAGCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTc < 1:60703/149‑1 (MQ=255) gACAGCATAGGCTGCTGTGGTGACATCGTAATGTTCATTCAGCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCg < 2:327533/149‑1 (MQ=255) gACAGCATAGGCTGCTGTGGTGACATCGTAATGTTCATTCAGCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCg < 2:558164/149‑1 (MQ=255) taacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATAAGTAACAGCACCCTCTGGTGTTTTCGTAt > 1:208083‑M1/117‑149 (MQ=255) aGCATAGGCTGCTGTGGTGACATCGTAATGTTCATTCAGCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTCTTCGTAt < 1:727823/149‑1 (MQ=255) aGCATAGCCTGCTGTGGTGACATCGTAATGTTCATTCAGCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTAt < 1:796785/149‑1 (MQ=255) tAGGCTGCTGTGGTGACATCGTAATGTTCATTCAGCATCTGTCGCCTGACTTCATTAAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAg > 2:427733/1‑149 (MQ=255) gctgctGTGGTGACATCGTAATGTTCATTCAGCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAgtgt > 2:56924/1‑149 (MQ=255) gctgctGTGGTGACACCGTAATGTTGATTCAGATTCTGTCGCCTGCCTTCATTGAGACGTAGCCATTTCTTATACCGGAGTGGACTCATTCCCGCTTCATCCGTCCTTAAATAAGTAACAGTACCCTCTGGTTTTTTCGTATGCAgtgt < 1:397218/149‑1 (MQ=255) ccgtggtgACATCGTAATGTTCATTCAGCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTAt < 1:186559/147‑1 (MQ=255) tgtgGTGACATCGTAATGTTCATTCAGCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATg > 1:593142/1‑149 (MQ=255) tgACATCGTAATGTTCATTCAGCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCgaca < 1:56809/149‑1 (MQ=255) aCATCGTAATGTTCATTCAGCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGtagactggccccctgaatctccagacaaccaatatcacttaaataa > 1:776456‑M2/1‑103 (MQ=255) tAATGTTCATTCGGCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTgc < 1:146882/149‑1 (MQ=255) gTTCATTCAGCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGAGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGtagactggacccctgaatctccagacaaccaatatcaattaaataagtgatagtct < 2:671563‑M2/149‑57 (MQ=255) cgCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATg < 1:521486/148‑1 (MQ=255) aGCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatacta > 1:289135‑M2/1‑85 (MQ=255) ggcGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAAAAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGAGAGACACTGCGCTCTTAGCATGGGGCAgg < 2:524217/147‑1 (MQ=255) cttGACTTAATTGAGATGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTCCGCATGCAGTGTCTATGCCACCGACTCTGCGCTCTTAGCATGGGGCAGGGAAt < 2:244483/147‑1 (MQ=255) tGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATaa > 1:138496/1‑149 (MQ=255) tgcggcagcgggcttgtaatgggtcgagtgataaccgatgtcgggaaacataggggccaatccAATAAGTAACAGCACCCGCTGGTGTCTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTGGCATGGGGCAGGGAATAACCa < 1:850164‑M1/86‑1 (MQ=255) gaCGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATCCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTtc > 2:329121/1‑149 (MQ=255) cGTAGCCATTTCTGACCCCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacag > 2:831204‑M2/1‑58 (MQ=255) gtaatgggttaagtgctaacagatgtctggaaatataggggcaaatccAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCATg > 1:351368‑M1/49‑149 (MQ=255) tttCTGATACCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGtagactggccccctgaatctccagtcaaccaatatcacttaaataagtgatagtcttaatactagtttttacactagtcattggagaacagatgattga < 2:605178‑M2/149‑100 (MQ=255) tttCTGATACCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCATGcaca < 2:593142/149‑1 (MQ=255) ttCTGATACCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTATTCGCGGTGGTCAGGGAATAACCAGGCTATTTCTCCATGCACAg < 2:424579/149‑1 (MQ=255) tCTGATACCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCCCCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCATGCACAgg < 2:719190/149‑1 (MQ=255) tCTGATACCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCCCCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCATGCACAgg < 2:719204/149‑1 (MQ=255) tCTGATACCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTACGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCATGCACAgg < 2:102876/149‑1 (MQ=255) tCTGATACCGGAGTGGAATCATTCCGCCGTGAGCAGTAATTAGCACTATATGAACACCCTCTGGTGTTTTCGTAGGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCATGCACAgg < 2:413630/149‑1 (MQ=255) tcataCCGGAGTGGACTCATTCCCGCTTAATCCGTCCTTAAATAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtc > 1:150814‑M2/3‑46 (MQ=255) tGATACCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCATGCACAGGcc > 2:662538/1‑149 (MQ=255) tGACACCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtc > 1:601710‑M2/1‑46 (MQ=255) aTACCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCATGCACAGGCCaa > 2:786443/1‑149 (MQ=255) cGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCATGCACAGGCCAATTAt > 2:145575/1‑149 (MQ=255) aacagatgtctggaaatataggggcaaatccAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCATGCACAGGCCAATTATGaa > 2:384573‑M1/32‑149 (MQ=255) aGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccg > 2:16053‑M2/1‑37 (MQ=255) gACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCATGCACAGGCCAATTATGAAagag > 1:391076/1‑149 (MQ=255) ttCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCATGCACAGGCCAATTATGAAaagggagagg > 1:199604/1‑149 (MQ=255) cccGCTTGATCCGTCCTTAAATAAGTAACAGCAACCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCATGCACAGGCCAAGTATGAAAGAGGAGAGGCt > 2:555208/1‑149 (MQ=255) ccGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCATGCACAGGCCAATTATGAAAGAGGAGAGGCTTAAGTTCTTg < 2:861131/149‑1 (MQ=255) cGTCCTTAAATAAGTAACAGCAACCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCATGCACAGGCCAATTATGAAAGAGGAGAGGCTTAAGTTCTTGa < 1:374237/149‑1 (MQ=255) tCCTTAAATAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacac < 1:604741‑M2/149‑138 (MQ=255) ttAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCATGCACAGGCCAATTATGAAAGAGGAGAGGCTTAAGTTCTTGAACCCt > 2:228877/1‑149 (MQ=255) AATAAGTAACAGCACCCTCTGGTGTTTTAGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCATGCACAGGCCAATTATGAAAGAGGAGAGGCTTAAGTTCTTGAACCCTGaa > 1:775664‑M1/1‑149 (MQ=255) AATAAGTAACACCGCCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCATGCACAGGCCAATTATGAAAGAGGAGAGGCTTAAGTTCTTGAACCCTGaa > 2:272181‑M1/1‑149 (MQ=255) gtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactggtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccccacaggaaaagatc > 1:606655‑M2/1‑1 (MQ=255) gtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatc > 2:792315‑M2/1‑1 (MQ=255) gtagactggccccctgaagctccagacaaccaatatcgcttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatc > 1:118195‑M2/1‑1 (MQ=255) gtagactggcccccggaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatc > 2:553936‑M2/1‑1 (MQ=255) | ATGGGATAGCTTTCGTAACCGACAGCATAGGCTGCTGTGGTGACATCGTAATGTTCATTCAGCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCATGCACAGGCCAATTATGAAAGAGGAGAGGCTTAAGTTCTTGAACCCTGAACGAAT > CP009273/1584675‑1584967 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |