Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | CP009273 | 1,236,056 | A→G | 7.2% | L491P (CTG→CCG) | cvrA ← | putative cation/proton antiporter |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP009273 | 1,236,056 | 0 | A | G | 7.2% | 143.0 / 2.6 | 57 | L491P (CTG→CCG) | cvrA | putative cation/proton antiporter |
Reads supporting (aligned to +/- strand): ref base A (25/26); new base G (2/2); total (28/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.48e-01 |
CGCGCCTAACAACTGCTGGACAATTTCACCCAGCGTTTGCTGCTTATCACGATATTCTCGCCCGTCTTCCAGGCCATATATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAACAC‑ATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCA > CP009273/1235911‑1236199 | cgcgCCTAACAACTGCTGGACAATTTCACCCAGCTTTTGCTGCTTATCACGATATTCTCGCCCGTCTTCCAGGCCATATATCAGCTCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAgcg < 2:167187/149‑1 (MQ=255) gcgcCTAACAACTGCTGGACAATTTCACCCAGCGTTTGCTGCTTATCACGATATTCTCGCCCGTCTTCCAGGCCATATATCCGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCGgcgc > 2:682139/1‑149 (MQ=255) gcgcCTAACAACTGCTGGACAATTTCACCCAGCGTTTGCTGCTTATCACGATATTCTCGCCCGTCTTCCAGGCCATATATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCGgcgc > 2:682125/1‑149 (MQ=255) aacTGCTGGACAATTTCACCCAGCGTTTGCTGCTTATCACGATATTCTCGCCCGTCTTCCAGGCCATATATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACcggcgg > 2:839569/1‑149 (MQ=255) aacTGCTGGACAATTTCACCCAGCGTTTGCTGCTTATCACGATATTCTCGCCCGTCTTCCAGGCCATATATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACcggcgg > 1:344677/1‑149 (MQ=255) ccttttCACCCCGCGTTTGCTGCTTAGCACGAGATTCTCGCCCGTCTTCCAGGCCATATATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTg < 1:430004/146‑1 (MQ=255) tttCCCCCCGCGTTTGCTGCTTAGCACAATATTCTCGCCCGTTTTTCAGGCCATATAGCAGCGCAACCTCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAAc < 2:161462/149‑1 (MQ=255) tttCACCCAGCGTTTGCTGCTTATCACGATATTCTCGCCCGTCTTCCAGGCCATATATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAAc < 2:783980/149‑1 (MQ=255) ccAGCGTTTGCTGCTTATCACGATATTCTCGCCCGTCTTCCAGGCCATATATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTa > 2:91616/1‑149 (MQ=255) cAGCGTTTGCTGCTTATCACGATATTCTCGCCCGTCTTCCAGGCCATATATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGACACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTAc > 1:711128/1‑149 (MQ=255) cGTTTGCTGCTTATCACGATATTCTCGCCCGTCTTCCAGGCCATATATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGa < 2:422512/149‑1 (MQ=255) ctgctTATCACGATATTCTCGCCCGTCTTCCAGGCCATATATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCg > 2:730782/1‑149 (MQ=255) acACGATATTCTTGCCCGTCTCCCAGGCCATATATCAGCGCAACATCGGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAGGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGTACAGTTTACCGAGCGCCGGAAGATc < 1:40232/148‑1 (MQ=255) cGATATTCTCGCCCGTCTTCCAGGCCATATATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATcgcg > 1:660395/1‑149 (MQ=255) tctcGCCCGTCTTCCAGGCCATATATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCg < 2:111091/149‑1 (MQ=255) ctcGCCCGTCTTCCAGGCCATATATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGa < 2:344238/149‑1 (MQ=255) ctcGCCCGTCTTCCAGGCCATATATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGa > 1:724186/1‑149 (MQ=255) ctcGCCCGTCTTCCAGGCCATATATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGa > 2:652999/1‑149 (MQ=255) ccGTCTTCCAGGCCATATATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAAt > 2:787097/1‑149 (MQ=255) ccGTCTTCCAGGCCATATATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAAt > 2:447309/1‑149 (MQ=255) ccGGCTCCCAGGCCAGATATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAAt < 2:281099/149‑1 (MQ=255) cGTCTTCCAGGCCATATATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAAtt > 2:58475/1‑149 (MQ=255) tCCAGGCCATATATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTacaca < 1:331622/149‑1 (MQ=255) aGGCCATATATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACacacaa > 2:184118/1‑149 (MQ=255) ggCCATATATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACacacaac > 1:770203/1‑149 (MQ=255) gCCATATATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACacacaaca > 2:833101/1‑149 (MQ=255) ccATATATCGGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGGGCGACGGGCGGGGAGTGGCTGAACGGTTTACCGAGCGCCGGAAGATAGCGTTCCCGGCCGATTACgcacgaccc > 1:406031/1‑147 (MQ=255) atCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAACAC‑ATCGcc > 2:175565/1‑149 (MQ=255) cAGCGCAACATCATCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAGTAAGCGTTGATCCTGCGCGACCGTCGTCGACTGGCGGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAGTTACACACATCGC‑ATCGCCtt < 1:282615/149‑1 (MQ=255) cgcAACATCAGCATATTTGGCGCTGGCTTCGAGCATGAAGTCACCAAAGGAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACAGAGCGCCGGAAGATCGCGTTCGCGACCAATTACACACAACAC‑AACGCCTTcgc > 1:63592/1‑149 (MQ=255) cgcAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACGGTTTCCCGAGCGCAGGAAGAACGCGGTCCCGACCGATTACACCAAACCC‑ATCGCCTTcgc > 1:266297/1‑149 (MQ=255) cgcAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGCCCAATTACACACAACAC‑CACGCCTTcgc > 1:713269/1‑149 (MQ=255) cgcAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAACAC‑ATCGCCTTcgc > 1:860172/1‑149 (MQ=255) aaCCTCAGCATAGTTGGCGCTGGCTTCGAGAATGAAGTCCCCACAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGCAAGATCGCGTTCCCGACCAATTACACACAACAC‑ATCGCCTTCGCGCa < 1:337606/149‑1 (MQ=255) aTCAGCATATTAGGCGCGGGCTGCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAACAC‑ATCGCCTTCGCGCAGTc < 2:31743/149‑1 (MQ=255) tCAGCATATTTGGTGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAACAC‑ATCGCCTTCGCGCAGTCg > 1:212999/1‑149 (MQ=255) aGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGTAAGATCGCGTTCCCGACCAATTACACACAACAC‑ATCGCCTTCGCGCAGTCggg < 1:723531/149‑1 (MQ=255) gCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCGGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAACAC‑ATCGCCTTCGCGCAGTCGGGt < 1:682139/149‑1 (MQ=255) gCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCGGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAACAC‑ATCGCCTTCGCGCAGTCGGGt < 1:682125/149‑1 (MQ=255) gCAGATTGGGCGCTGGCTTCGAGAATGAAGTCACCAAAGACGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAACAC‑ATCGCCTTCGCGCAGTCGGGt < 1:120330/149‑1 (MQ=255) ggCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAACAC‑ATCGCCTTCGCGCAGTCGGGTGCTGCCgg > 2:98838/1‑149 (MQ=255) gtcgtCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAACAC‑ATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGAt < 1:865495/145‑1 (MQ=255) ggCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAACAC‑ATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGAt < 2:776960/149‑1 (MQ=255) gCTTCGAGAATGAAGTCACCAAAGAAGCGTTGCTGCCGCGCGACGGGCGGCGACTGGGTGAACAGTTTACCGAGCGCCGGGAGGTCGGGTTCCCGACAAATTAAACAC‑ACACAATCACCTTCGCGCAGGCAGGGACTGCCGGTCGGATg > 1:78531/1‑149 (MQ=255) ttCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAACAC‑ATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGaa > 2:81491/1‑149 (MQ=255) aTGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAACAC‑ATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGATGCAACTg < 1:298062/149‑1 (MQ=255) aTGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAACAC‑ATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTg < 2:691971/149‑1 (MQ=255) aTGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAACAC‑ATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTg < 2:445913/149‑1 (MQ=255) tGAAGGCACCAACGCCGCGTGGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCTCGTTCCCGACCAATTACACACAACAC‑ATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTgg < 2:112149/149‑1 (MQ=255) ggAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAACAC‑ATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTgg < 2:347771/148‑1 (MQ=255) cACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAACAC‑ATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCa < 2:711128/149‑1 (MQ=255) aCCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAACAC‑ATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCAc < 1:91616/149‑1 (MQ=255) cAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAACAC‑ATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGa < 1:455107/149‑1 (MQ=255) ttGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAACAC‑ATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCg < 2:344677/149‑1 (MQ=255) gctCCAGCGCGACCGGCTGCGACTGGGTTAACGGTTCACCGAGCGCCGCAACATCGCGTCCCCGACCAATTATACACGACAC‑ACCTCCCTTGCGCAGTCGGGTGCTGCCGGTAGGACGAAGCAACTGTTTATCACGGCACAGTGCCCCa < 1:379605/147‑1 (MQ=255) gATCCAGCGCGACCGGCGGCGCCTGGCTGAACTGTTTCCCGCGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAGCAC‑ATCGCCTTCGCGCAGTGCGGGGCGGCCGGTAGGATGAAGCAACGGGTTATCACGACACCGAGCCGCa > 1:7353/1‑149 (MQ=255) gATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAACAC‑ATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGCTGAAGCAACTGGTTATCACGAAACAGTGCCGCa > 1:663204/1‑149 (MQ=255) | CGCGCCTAACAACTGCTGGACAATTTCACCCAGCGTTTGCTGCTTATCACGATATTCTCGCCCGTCTTCCAGGCCATATATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAACAC‑ATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCA > CP009273/1235911‑1236199 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |