| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,421,172 | A→C | 32.0% | D33E (GAT→GAG) | argT ← | lysine/arginine/ornithine transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,421,172 | 0 | A | C | 32.0% | 69.3 / 49.8 | 79 | D33E (GAT→GAG) | argT | lysine/arginine/ornithine transporter subunit |
| Reads supporting (aligned to +/- strand): ref base A (30/22); new base C (16/10); total (46/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.10e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.30e-01 | |||||||||||
CTTTCAGTGAGGGGATCAGCGCGTCAAAGTCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGAC‑AGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGTGAAAATGGCTTTTTTATGTTGTGTATTGTGTTG > CP009273/2421024‑2421318 | cTTTCAGTGAGGGGATCAGCGCGTCAAAGTCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTa > 2:303655/1‑149 (MQ=255) tttCAGTGAGGGGGTCAGCGCGTCAAAGTCACTGGCAACCCGGGTACATTTCTCCTGCATCCGTTTGCACATCTCCCTACCGAGTTCGATATCAAAGCCAACAAAAGCACCTTGAGCATCTTTCGATGAGAACTGTGCGTAGGTGGTAt < 1:220114/149‑1 (MQ=255) tttCAGTGAGGGGATCAGCGCGTCAAAGTCACTGGCAACCCAGGTACATTTCACCTGCATCCTTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCTTCTTTCGATGAGAACGGTGCGTAGGTGGTAt > 2:584646/1‑149 (MQ=255) tttCAGTGAGGGGATCAGCGCGTCAAAGTCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCACCAAAATCACCTGTCGCATCTTTCGATGAGAACGGTGCGTCGGTGGTAt > 1:260855/1‑149 (MQ=255) gttCAGTGAGGGGACCAGCGCGCCAAAGTCACGGGCAACCCAGGTACATTTCCCCTGCATCCGTGTTCACATCTCGTTACGGTGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTAt < 1:51363/148‑1 (MQ=255) gtgtgtCAGCGCGTCAAAGTCACTGGCAACCCAGGGACATTTCACCTCCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGa < 1:430381/144‑1 (MQ=255) ggtaTCAGCCCGTCAAGGTCACTGGCAACCCGGTTACATGCCCCCTGTATACGTTCGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAGTCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGCTGGTCTCGGTTCCGAt < 1:612908/146‑1 (MQ=255) gATCAGCGCGTCAAAGTCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTACtatag > 2:157380/1‑148 (MQ=255) aTCAGCGCGTCAAAGTCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACg > 2:505164/1‑149 (MQ=255) aTCAGCGCGTCAAAGTCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACg > 2:730695/1‑149 (MQ=255) aTCACCGCGTCAAAGTCACTGGCAACCCAGGTACATTTCACCTGCATCCCTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGAACCGATAcc < 2:214731/149‑2 (MQ=255) cAGCGCGGCAAAGTCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAGCGGTGCGTAGGTGGGATCGGTTCCGATACGTa < 1:622921/149‑1 (MQ=255) aGCGCGTCAAAGTCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTAc > 1:649270/1‑149 (MQ=255) aGCGCGTCAAAGTCACTGGCAACCCAGGTACATTTCACCTGCATACGTTTGCACATCTCGTTACCGGGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGGGCGTAGGTGGTATCGGTTCCGATACGTAc > 1:789893/1‑149 (MQ=255) gcgcGTCAAAGTCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTAcc > 1:810299/1‑149 (MQ=255) cgcgTCAAAGTCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGGTCCGGTACCTACCg > 2:441647/1‑149 (MQ=255) aaaGTCACTGGCAACCCCGGTACATTGCACCTGCATCCGTTTGCACATCTCGTTACCGACATCGATATCAAAGCCAACAAAATCCCCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCg < 2:29198/149‑1 (MQ=255) gtgccttgCAACCCCGGTCCATTTCACCTGCATCCGTTTGCACATCTCGCTACCGAGATCGATATCAACGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGTTGCGTAGGTGGTATCCGTTCCGATACGTACCGTCTCCGGTa < 2:328447/142‑1 (MQ=255) gTCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTa > 1:849110/1‑149 (MQ=255) tGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGcgcc > 1:731471/1‑149 (MQ=255) ggCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGcgccg < 2:838163/149‑1 (MQ=255) gCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGcgccgc > 2:729218/1‑149 (MQ=255) cccAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGGTACGTACCGTCTCCGGTAGCGCCCCATAg > 1:127318/1‑149 (MQ=255) cccAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTGGCGCCGCATAg > 1:401816/1‑149 (MQ=255) cccAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGAGCGTAGGTGGTATCGGGTCCGATACATACCGTCCCCGGTAGCGCCCCATAg > 1:27446/1‑149 (MQ=255) ccAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAAAACGGTGAGTAGGTGGGCTCGGTTCCGATAAGTAACGTCGCGGCTAGCGCCGGATAGc > 1:24541/1‑149 (MQ=255) ccAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCAATATCAAGGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTCGCGTCTCCGGTAGCGCCGCATaca > 1:546604/1‑147 (MQ=255) aGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTg < 1:844208/149‑1 (MQ=255) aGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGACATCAAAGCCAACCAAGACGCCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTTGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTg < 1:855268/149‑1 (MQ=255) aGGTACATTTCACCTGCATCCGTTTGCACACCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTg < 1:845255/149‑1 (MQ=255) gTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGa > 2:30622/1‑149 (MQ=255) gTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGa > 2:415579/1‑149 (MQ=255) gTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGCCTCCGGGAGCGCCGCATAGCCGGa > 1:715304/1‑149 (MQ=255) aCCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTGGGTGGTATCGGTTCCGATACGTACCGTCTCCCGTAGCGACGCAGAGCTGGAAGCCGCttt > 1:296866/1‑147 (MQ=255) ccTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTGTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCtgtg < 2:56665/149‑1 (MQ=255) tGCATCCTTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGGGCGTAGGTGGGATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGga < 2:99150/149‑1 (MQ=255) tCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGgagaga > 2:186262/1‑149 (MQ=255) ccGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGAc > 2:517499/1‑149 (MQ=255) gTTTGCACATTTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAAAGGTGCGTAGGTGGTCTCGGTTCCGATACGTACAGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCg > 1:370644/1‑149 (MQ=255) atcgaTCTCGGTAACGAGATCGATATCAAAGCCAGCAAAATCACCTTTAGCAGCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGCAGCCGCTGTGGAGAGACCGACtc > 1:98114/5‑148 (MQ=255) acaTCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCCTAGCTGGAAGCCGCTGTGGAGAGAGCGACTAAc > 2:279437/1‑149 (MQ=255) cGTTACCGAGATCGATATCAAAGCCAACAGAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGAc < 2:685339/149‑1 (MQ=255) cGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTGCGGTGGAGCCGCTTAGCTGGGAGCCGCTGTTGAACGACCGACTACGAAAAAC‑AAAGCg > 1:163175/1‑149 (MQ=255) cGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCCTAGCTGGAAGCCGCTGTGCAGAGACCGACTAACAAAGaaaaacag > 1:163730/1‑142 (MQ=255) cGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGAC‑AGAGCg > 2:105991/1‑149 (MQ=255) cGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGAC‑AGAGCg > 2:129376/1‑149 (MQ=255) cGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGAC‑AGAGCg > 2:144201/1‑149 (MQ=255) gagaTCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGAC‑AGAGCga > 1:144532/1‑149 (MQ=255) aacGATATCAAAGCCAACAAAATCGCCTTTAGCATCGTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGAC‑AGAGCGAGaa < 1:677764/147‑1 (MQ=255) tCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGAGGAGAACGGTGCGTAGGTGGTCTCGGTTCCAATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGAC‑AGAGCGAGAAt > 2:624468/1‑149 (MQ=255) gATCTCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACAGTGCGTAGGTGGTATCGCTTCCGATACGTACCGTCTCCGGGAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGAC‑AGAGCGAGAAACg > 2:131848/1‑149 (MQ=255) atatCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGGCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGAC‑AGAGCGAGAATCGa < 2:184360/149‑1 (MQ=255) agaacAAAGCCACAAAAACCACCGTTGTCATCTGTCGATGGGAACGGCGCGTAGGTCGTATCGGTGCCGATACGGACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACGAACAAAGAC‑AGAGCGAGAATCGa < 1:201693/145‑1 (MQ=255) tatCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGAC‑AGAGCGAGAATCGAc < 2:370644/149‑1 (MQ=255) tatCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGAC‑AGAGCGGGAATCGAc > 2:792709/1‑149 (MQ=255) aaGCCAACAAAATCACCTTTTGCATCTTTCGATGAGAACGGTGCGTAGGTTGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGAC‑AGAGCGAGAATCGActtctt < 1:611459/149‑1 (MQ=255) aaGCCAACAAAATCACCTTTGGCATCTTTCGATGAGAACGGTGCCTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGAC‑AGAGCGAGAATCGActtctt < 1:460587/149‑1 (MQ=255) aaGCCAACAAAATCACCTTTAGCATCCTTCGATGACAACGGTGCGGAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGAC‑AGAGCGAGAATCGActtctt < 1:452814/149‑1 (MQ=255) ccgacaaAATCACCTTCAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGAC‑AGAGCGAGAATCGACTTCTTcat < 1:584646/146‑1 (MQ=255) ccAACAAAATCACCTTTAGCATCGTTCAATAAGCGAAGTGCGTAGGGGGTATCGGTTCCGATACGTACCGACGCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGGGACCGACTAACAAAGACGGGACGGAGAA‑CGACTTCTTcat > 2:210866/1‑149 (MQ=255) caacaaAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGAC‑AGAGCGAACATCGCCTTCTTcgta > 1:60286/1‑149 (MQ=255) aacaaAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGTATGCTTCTTTGGAGAGACCGACTAACAAAGAC‑AGAGCGAGAATCGACTTCTTcatac > 2:417070/1‑149 (MQ=255) aacaaAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGACGTGGCTGATAAGAAACCGACTAACAAAGAC‑AGAGCGAGAATCGACTTCTTcatac > 2:199142/1‑149 (MQ=255) aacaaAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGAC‑AGAGCGAGAATCGACTTCTTcatac > 2:819235/1‑149 (MQ=255) caTCACGTTTTGCATCTTTCGATGAGAACGGTGCGTAGGTGGTACCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGAC‑AGAGCGAGAATCGACTTCTTCATACATAAc < 2:169219/148‑1 (MQ=255) aTCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGAC‑AGAGCGAGAATCGACTTCTTCATACATAAcc < 2:765951/149‑1 (MQ=255) tttAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGAC‑AGAGCGAGAATCGACTTCTTCATACATAACCCTCAAg > 2:277058/1‑149 (MQ=255) gggctCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGAC‑AGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGTGa < 1:759183/145‑1 (MQ=255) gCATCTTTCGAGGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATCCGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGAC‑AGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGTGaa < 2:91697/149‑1 (MQ=255) ttCGATGAGAACGGGGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGAC‑AGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGTGAAAATGGc < 1:303655/149‑1 (MQ=255) gATGGGACCGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGAC‑AGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGTGAAAATGGCttt < 1:451022/149‑1 (MQ=255) aaCGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTGTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGAC‑AGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGTGAAAATGGCTTTTTTAtg > 1:187739/1‑149 (MQ=255) aaCGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGAC‑AGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGTGACAATGGATTTTTTAtg > 2:828253/1‑149 (MQ=255) cGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGAC‑AGAGCGAGGATCGACTTCTTCATACATAACCCTCAAGTGAAAATGGCTTTTTTATGTTGTGTa > 2:501970/1‑149 (MQ=255) tAGGTGGTACCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGCAGAGACCGACTAACAAAGAC‑AGAGCGAGAATCGTCTTCTTTATGCTTAACCCTCAAGTGAAAATCGCTTTTTTATGTTGTGTAtt < 1:657993/149‑1 (MQ=255) gtggtATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGAC‑AGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGTGAAAATGGCTTTTTTATGTTGTGTAttgtg < 2:731471/149‑1 (MQ=255) gcggtCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGAC‑AGAGCGAGAATCGACTTCTTCATACATAACCCCCAAGTGAAAATGGCTTTTTTATGTTGTGTAttgtg < 2:401011/147‑1 (MQ=255) ggtCTCGGTCCCGAGACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGAC‑AGAGCGTGAATCGACTTCTTCATACATAACCCTCAAGTGAAAATGGCTTTTTTATGTTGTGTAttgtgtt < 2:581646/149‑1 (MQ=255) gtATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGAC‑AGAGCGAGAATCGACTTCTTCATACATAACCGTCAAGTGAACATGGCTTTTTTATATTGGTGCttgtgttg > 1:861579/1‑149 (MQ=255) gtATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGAC‑AGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGTGAAAATGGCTTTTTTATGTTGTGTAttgtgttg > 1:105167/1‑149 (MQ=255) | CTTTCAGTGAGGGGATCAGCGCGTCAAAGTCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGAC‑AGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGTGAAAATGGCTTTTTTATGTTGTGTATTGTGTTG > CP009273/2421024‑2421318 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |