BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	CP009273	2,400,257	IS5 (+) +4 bp	intergenic (‑137/‑780)	lrhA ← / → alaA	transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2282398 =	NA (NA)	105 (0.650)	80/296	1.4	100%	noncoding (1195/1195 nt)	IS5	repeat region
*	?	CP009273	2400257 =	0 (0.000)	105 (0.650)	80/296	1.4	100%	intergenic (‑137/‑783)	lrhA/alaA	transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2
*	?	CP009273	= 2283592	NA (NA)	209 (1.290)	110/296	0.1	100%	noncoding (1/1195 nt)	IS5	repeat region
*	?	CP009273	= 2400260	0 (0.000)	209 (1.290)	110/296	0.1	100%	intergenic (‑140/‑780)	lrhA/alaA	transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2

Only 100 of 133 total aligned reads displayed.

CAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCA  >  CP009273/2282250‑2282539

cAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATaag                                                                                                                                                 >  1:2201913/1‑149 (MQ=255)

    ttCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATaaggaag                                                                                                                                             >  2:2013466/1‑149 (MQ=255)

       ttttATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGCATATAAGGAAGGTg                                                                                                                                          >  2:1763809/1‑149 (MQ=255)

       ttttATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTg                                                                                                                                          >  2:1118444/1‑149 (MQ=255)

       ttttATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTg                                                                                                                                          >  2:1613259/1‑149 (MQ=255)

       ttttATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTg                                                                                                                                          >  2:1613887/1‑149 (MQ=255)

         ttATATGCTGTTCTCCGCCAGGAATGAGTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTGCAGGACAACACCATAAAATGTCTCACCATACTCAACAGTTGATGCCAATGCAATGGGTGAATATatggaaggatcg                                                                                                                                        >  1:52382/1‑145 (MQ=255)

            tatGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGagt                                                                                                                                     >  2:1920048/1‑147 (MQ=255)

            tatGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTATCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTAAGGGTGAATATAAGGACGGTGCGAAt                                                                                                                                     >  2:1646532/1‑149 (MQ=255)

              tGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCACCAGTTGATGCCAATGCTATGGGTGAATAGaagccagggggggataa                                                                                                                                   >  1:2048075/1‑135 (MQ=255)

               gCTGTTCTCCGCCGGGATTGATTTTCGTATTATTGGCGGTCCCATAAGCCAGAAGGATATCTTTTTCCAGGACAACACCATCCACTGTCTCACCATACTCAACACCTGCTGACAATCCAATGGTTGGATAGaaggacagtggggaaaag                                                                                                                                  >  1:776449/1‑136 (MQ=255)

                cTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGc                                                                                                                                 <  2:132725/149‑1 (MQ=255)

                 tGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACGGTCTCACCATACTCCACAGTTGATGCCAATGCTCTGGGAGAAGATAAGGAAGGTGCGGATAAGCg                                                                                                                                >  1:1053732/1‑149 (MQ=255)

                      tcCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACAACATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGaa                                                                                                                           >  1:2074010/1‑149 (MQ=255)

                       tcGCTAGGATTGATTTTCATCTTATTGGCGGTCCAATCCACCAGCTGCATATCCTTGTCCAAGACAACTGCGGCAGCGGTCGCACCATGCTCAGCAGTTGATGCCAATGCGATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGaaa                                                                                                                          <  1:2222079/148‑1 (MQ=255)

                       ccGCCAGGATTGATTTTTGTATTCTTGGCTGTCTCAGAACCCAGCGGTTTATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCCACAGTTGATGCAAATGCTATGGGTGAATATAAGGAAGGTGAGAATAAGCGGGGaaa                                                                                                                          <  1:1216866/149‑1 (MQ=255)

                         gCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAGGGAAGGTGCGAATAAGCGGGGAAAtt                                                                                                                        >  2:179981/1‑149 (MQ=255)

                          ccAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAAttc                                                                                                                       >  1:70585/1‑149 (MQ=255)

                             ggATTGATTTTCGTATTTTTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAAttcttc                                                                                                                    <  1:343775/149‑1 (MQ=255)

                               agtgattTTCTTATTATGGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACGCCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTtctc                                                                                                                  <  2:1208404/147‑1 (MQ=255)

                                    ttttCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTg                                                                                                             >  1:1939541/1‑149 (MQ=255)

                                          tattatTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAg                                                                                                       >  1:1279665/1‑149 (MQ=255)

                                          tattatTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAg                                                                                                       >  2:2006470/1‑149 (MQ=255)

                                               ttGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatt                                                                                                  >  2:2466843/1‑149 (MQ=255)

                                               ttGGCGGTCCCATAAACCAGCTGGAGATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatt                                                                                                  <  2:1639977/149‑1 (MQ=255)

                                                  gCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttca                                                                                               >  2:1761099/1‑149 (MQ=255)

                                                      tCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCatttca‑tt‑tc                                                                                         <  2:1364066/149‑1 (MQ=255)

                                                      tCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCatttca‑tt‑tc                                                                                         >  2:759767/1‑149 (MQ=255)

                                                        ccATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑Tt‑tctt                                                                                       >  2:926816/1‑149 (MQ=255)

                                                         cATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑Tt‑tcttc                                                                                      >  1:1163995/1‑149 (MQ=255)

                                                           tAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCAt                                                                                    <  2:2546682/149‑1 (MQ=255)

                                                           tAAACCAGCTGGATATCTTGTTCCAGGACAACACCATCAACGGTCTCACCATACTCAACAGTTGATGCCAATGCGATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCAt                                                                                    <  1:1114165/149‑1 (MQ=255)

                                                              aCCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCCCCATACTCAACAGTTGATGCCAATGCTATGGGTGAAACAAACCTAAAATCTAGTAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGtt                                                                                 >  2:621873/1‑149 (MQ=25)

                                                              aCCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGtt                                                                                 <  2:1786367/149‑1 (MQ=255)

                                                              aCCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGtt                                                                                 <  2:234485/149‑1 (MQ=255)

                                                               ccAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGttt                                                                                <  2:2200509/149‑1 (MQ=255)

                                                               ccAGCTGGATATCTTTTTCCAGCACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGttt                                                                                <  1:825545/149‑1 (MQ=255)

                                                                 aGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGa                                                                              >  2:866427/1‑149 (MQ=255)

                                                                 aGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGa                                                                              <  2:1188530/149‑1 (MQ=255)

                                                                     ggATATCTTTTTCCAGGACAACACCCTCAACTATCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑CTTTCATGTTTGAGCCg                                                                          >  2:2644022/1‑149 (MQ=255)

                                                                      gATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGCATAAGCGGGGAAATTCTTCTCGGCTGACTCGGTGCTGACA‑CG‑TTTTCATGTTTGAGTCGa                                                                         >  1:670820/1‑149 (MQ=37)

                                                                       atatCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACCGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTGCTGGTTGAGCCgca                                                                        >  1:454442/1‑147 (MQ=255)

                                                                        tatCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGAtt                                                                       >  2:2282765/1‑149 (MQ=255)

                                                                          tCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCATTGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TTTTCTTGTTTGGGCCGAtttt                                                                     >  2:1321181/1‑149 (MQ=255)

                                                                           cTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGGTGCCAATGCTCTGGTTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTAATTTCA‑TT‑TCTTCATGTCTGAGCCGAttttt                                                                    >  1:1112987/1‑149 (MQ=25)

                                                                           cTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTAGGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGAttttt                                                                    >  1:2431674/1‑149 (MQ=255)

                                                                            tttttCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGa                                                                                                                                       >  1:2383373/1‑83 (MQ=255)

                                                                             tcttCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTtc                                                                  <  1:2508459/147‑1 (MQ=255)

                                                                              ctcccAGGACAACACCATCATCTGTCTCACCATACTCAACAGTTGATGCCACTGCTATGGGTGAATATAAGGAAGGTGCGAATCAGCGGGGACATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTtct                                                                 <  2:1185403/146‑1 (MQ=25)

                                                                               ttCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTtctc                                                                <  2:2236256/149‑1 (MQ=255)

                                                                                  cAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCg                                                             <  2:1154653/149‑1 (MQ=255)

                                                                                   aGGACAACACCATCAACTGTCTCACCATGCTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGt                                                            >  2:1601401/1‑149 (MQ=255)

                                                                                   aGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGt                                                            >  2:2562078/1‑149 (MQ=255)

                                                                                    ggACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTa                                                           <  1:341210/149‑1 (MQ=255)

                                                                                      acaacaCCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTaaa                                                         <  2:2436597/149‑1 (MQ=255)

                                                                                          cacCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGcc                                                     >  1:1779635/1‑149 (MQ=255)

                                                                                            caaTCAACTGTCACACCATACTCAACAGTTGACGCCAATGCGATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTAACTCAGGCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCtt                                                   <  2:1837544/147‑1 (MQ=18)

                                                                                             cATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTg                                                  >  2:1717758/1‑149 (MQ=255)

                                                                                                 aaCTTTCTCACCATACTCAACATTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATc                                              <  1:2303598/149‑1 (MQ=255)

                                                                                                 aaCTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGATGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATc                                              >  1:1732907/1‑149 (MQ=255)

                                                                                                 aaCTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGAGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATc                                              >  1:635237/1‑149 (MQ=255)

                                                                                                  actggcttcccATACTCAACGGTTGATGCCAATGTTATGGGTGAATATAAGGAAGGTGCGAATAAGCTGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCa                                             <  1:952746/140‑1 (MQ=17)

                                                                                                  aCTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCa                                             <  1:2006470/149‑1 (MQ=255)

                                                                                                  aCTGTCGCACCACACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCa                                             <  1:1028613/149‑1 (MQ=255)

                                                                                                        gagtatggtgagaCAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTAt                                       >  2:2585129/13‑149 (MQ=255)

                                                                                                           ccATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCCATTTa                                    >  1:1172926/1‑149 (MQ=255)

                                                                                                            cATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAg                                   <  2:70585/149‑1 (MQ=255)

                                                                                                               aCTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCTTGTTTGAGCCGATTTTTTCTCCGGTAACTGCCTTGCATCAGCCTTTTTAGAcc                                >  2:326548/1‑149 (MQ=17)

                                                                                                                cTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCg                               <  2:2241800/149‑1 (MQ=255)

                                                                                                                 tCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTTTACCGGAAGTGCCTTGACTCAGCCTATTTAGCCCGt                              >  2:495995/1‑149 (MQ=17)

                                                                                                                 tCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGt                              >  2:80314/1‑149 (MQ=255)

                                                                                                                 tCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGt                              >  2:2411979/1‑149 (MQ=255)

                                                                                                                   aaCAGTTGATGCCGATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAGATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTATTTCTGCCGTAAATGCCTTGAATCAGCGTATTTAGACCGttt                            >  2:1883875/1‑149 (MQ=17)

                                                                                                                   aaCAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTAATTAGACCGttt                            >  1:754204/1‑149 (MQ=255)

                                                                                                                     cAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttct                          >  2:2363824/1‑149 (MQ=255)

                                                                                                                      aGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGCAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTGAGACCGTttctt                         <  2:1923245/149‑1 (MQ=255)

                                                                                                                      aGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTATTATTGACTGACTTAGT‑ACTTGA‑TTCTCTGCATGTTTGAGCCGAGTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttctt                         >  2:2628400/1‑149 (MQ=17)

                                                                                                                       gTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttcttc                        <  2:1163995/149‑1 (MQ=255)

                                                                                                                        ttGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTGAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCg                       >  2:199826/1‑149 (MQ=255)

                                                                                                                         tGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGc                      <  2:865343/149‑1 (MQ=255)

                                                                                                                         tGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGc                      <  2:2201913/149‑1 (MQ=255)

                                                                                                                         gtctGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGc                      <  1:1317681/146‑1 (MQ=255)

                                                                                                                          gATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCAATTTAGACCGTTTCTTCGcc                     >  1:2259898/1‑149 (MQ=255)

                                                                                                                          gATGCCAATGCTATGGGTGAATATAAGGAAGGAGCGCAGAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGcc                     >  1:1894641/1‑149 (MQ=255)

                                                                                                                            tGCCAATGCTATGGGTGAATATAAGGCAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCAt                   <  1:1646532/149‑1 (MQ=255)

                                                                                                                             gCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTAA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCAtt                  >  2:1030233/1‑149 (MQ=255)

                                                                                                                              ccAATGCTGTGGGTGAATATAAGGAAGGTGCGAATAAGCGGAGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCAttt                 >  1:22482/1‑149 (MQ=255)

                                                                                                                                aaTGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTaa               >  2:1687707/1‑149 (MQ=255)

                                                                                                                                 atccTATGGGGGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAg              <  1:229431/146‑1 (MQ=255)

                                                                                                                                 aTGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAg              <  2:777682/149‑1 (MQ=255)

                                                                                                                                   gCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAgac            >  1:140597/1‑147 (MQ=255)

                                                                                                                                    cTATGGGTGAATATAAGGATGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCg           <  1:2497399/149‑1 (MQ=255)

                                                                                                                                     ccatgcttcatatAAGGAAGGTGCGAATAAGCGGGTGGGTTCTTCGCTGCTGACTTAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGt          >  1:244437/10‑149 (MQ=11)

                                                                                                                                       tttgtctcaataAGGAAGGTGCGAATAAGCGGGGTAGTTCTTCTCCGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGGTTTTTTCTCCCGTAAATGCATTGAATCTGCCTATTTAGACCGTCTCGTCGCCATTTAAGGCTTTa        <  1:436442/140‑1 (MQ=1)

                                                                                                                                         ggTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATc      <  1:2466843/149‑1 (MQ=35)

                                                                                                                                           tcaaTATGAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGCTTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATccc    <  1:2365103/147‑1 (MQ=12)

                                                                                                                                           tGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGATGCATTAGT‑ATAAGACTA‑CCCGCATGTTTGAGACGATTTTTTCTCCCGTAACTGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCTTTTAAGGCGTTATccc    <  1:1883875/149‑1 (MQ=11)

                                                                                                                                            gAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATcccc   >  2:2099159/1‑149 (MQ=33)

                                                                                                                                             aaTATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCa  <  1:759767/149‑1 (MQ=32)

                                                                                                                                             aaTATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCa  <  2:2314025/149‑1 (MQ=32)

CAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA‑TT‑TCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCA  >  CP009273/2282250‑2282539

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.